Blg01023.1 (mRNA) - B. lanceolatum

Overview
NameBlg01023.1
Unique NameBlg01023.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:4941153..4948368-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01023.1 ID=Blg01023.1|Name=Blg01023.1|organism=Branchiostoma lanceolatum|type=mRNA|length=7216bp|location=Sequence derived from alignment at Sc0000003:4941153..4948368- (Branchiostoma lanceolatum)
GGACAATGGGTGTTTGAAAACTTATAAATAGTCATCATTGATGGTAACTA
GATAAATTCTAATGATTAAAACATTACTTTGTAGGTAATTGATTATTATA
TTATTGATCTTATTCATCGCTGTGTCTTTTGAGTGGTGATATTTCAACGT
ATTTTACCCCTACTGTTGAAATGGGTTTTCCAGGAAGTTACTTGGGTGAG
AGACCATGTGCTGATCAGTGATCACAGACGATATTGCGACATTTGTGGAT
CGATCAGCCGGCTATACTTTGACCAGCTGTTTATCGATTAACCGGATGTA
AGTGTCGATTGCATCGTTCAGTTTTATTTCAATATTTTGTGCTGAACGTA
GCTGACGGTGCTGTGATATTACTCAGTGCATGATTCAATACTGTAGCTAT
AGGTAAGTTAAAGTTCACAGATTTTTAAATGCCCTGAAATCTTTTGTCTT
TTGTCACTTACAATACGTATGTTGAAATAATTTTGTTTCAGAGATTGATC
AAGATATAATTACCATATGATAGCTAACTATTACAGCCTTACACAATGCT
CAAAAGCAACAATCTAGACAGTGTGCCATATTCTCTACTCATATTCAACA
GTTTTGTATACTGTAAAACGTTAGCGTAATGGAGAGTTATAAAACGTATT
TTCAATAAAGAAATAAACTTAGAAAAGTTGGAAAATATAAGGAATACTAA
AGGCACAGTTTAGAGAGGGCGAATCAGTTATGTCAATTGAGTCGCGATTG
GCTACTTAACTTGATAACTTGATAGAAATGCAATAACTGATATATTCATG
TATATTCCTTTCAGTATCATATAACATGGCAGACACTGGTGACTCTAAGG
GGGCGACGTCTGAATCTGCTGCTGCGGAATCGGATGCTATGGACTGTCCC
AGCCTGGAGGGTTCCGATGACTCGGACTGGGAGGAATGCGACGACGACGA
ATCAGGAGGCAGCGTTCTCGATCTGTTCAGCAAGGAGGAACTCTCATCAG
CTGAAGACGTGTTTCAGCACTGCAAAACAGTACATCAGTTTGATGTGCAA
AAATTTGTTGTCAAAAATAGTGAGTATTATACCTGATTTTCATATCCTGG
ATAATCATTAAGAGCAACAATGTAAATATTCTGGGAATTTCAATCATAAA
GTTGTTAGTTGGAATGACCATTATGTACTTGTAAGCTGTTATTCTGAATC
AAACTTGCTGTTTGAACATCAAACAGCTGATCTTGTTCTTAGGTTACTTC
CTTTTGTTTAATTGCTATAAATAGTATAATTTGATGACAAGCATTTAACG
AGTGCAAAATTCCTTCGTTTTTCTTGTCTCTTTGATACTGGTATTAACTT
TAATGTTGTCTGTTCCATTTTTGTACTTCATTTCATTGCATTTTTCTTGT
TGCAGAGTTGGACATGTACGGGTACATCAAGTTCATCAACTACGTACGCA
GCAAGGTAAAACAACTTTATGCGTATCGATCACTTCTGTCATTTTTCAGA
GTAAATAGAACACTTATCTACGCTAAAAATAGTTACTCAAGCCACTGGAT
GAAATTTTGAAACAGTCAGACGTTTCAGACAGCATCCGCTGTCTTTCGTC
AGTGAATAACGATAGGACTGGAAAACCAGATTTTGTACCAAAACTCTGAA
TAGATATGTTATTGAGTTTTGGTATGAAATCTGGTTTTCCAGTCCTATCG
TTAGTCACTGACGAAAGACAGTGGATGCTGTCTGAAACGTCTAATAATAA
CTGTTTCAAAATTTTATCCAGTTGCTTGAGTAACTATTTTTGGCGTACCT
TACTACCTGAATGTCTAACCTTCATCAACGCAGTAGAACACTTGTCTGAT
TCCTCCACATAGAATTGAAAACAGAATATGTGTTCATTTGATAGGAATAC
CGATGATTGTCCTTTTCAGAACCCCTCTCCCACAGATATTAGTGATTCTT
GCCAAGCTAAAGAGGCACCCTGGGATAGTGACCAGTACTTACAACCAGTC
CTACAAGATGACCCCCTTCTCTTCTATGGTGAGATCATGTACTTCTAGTA
ATCACTAACTCTGTTTACATTAGTGACATCGATACCCAAGTGGTTAGGCT
AGTGGACACCCGACAGGTCATAATCCTGGCATTCCTGGCTAAACATTGTA
CCCTTTGGAAAGACACTTTAAATGAATTTCCTCACCTCACCTAAGTTTAA
AAATGGGTACCTGACATCAGTTGGGGTGGTAGATTGGTGCACATGATGGA
AGGAGAGGTATGACCGTATGGGCTTTGTCTTGCCCTTAGGGCTAGGGCTC
TGGATAACAACCTACTGATCCTACAGCTTCTCAAAGGCTATGGTACTTTT
TGTTGCTGTATTTACCTTAATTTTTTCAAAACTGTATGTTTAAGGTACAT
GTATGTTTTGTGAAAGAATAAATCAAATGTAGTACCAACACACAAGGCAA
GTTATTGAAGGAAAGAAGAAAAAAGCAACTACCACAGTCATGAGTTAACA
GTCTGGACTGGTGACATTACCCACAGATGTGGAGGAGTGGACGACTCAGT
CTCCTGTTGCCATGGAGACAGAAGACAGTGACATCACATTGCCAGGACAA
CAGTACAGAGCTCTGCTGGAGAGACTGCACCAAGCTGAGGCTAGGTCAGA
GGTCACTGAGGGGCAGCTGCATGATGCGCTGAAGGACATTGATCGGCTCA
GGTATGTTAACCCTCAACCTGCCGAGGTAGCTATAGCATTTTGGCACCAA
ATTTGTATCTCTTATGGGGTTAGATAGCCGATAGAAGGTTAACACTGGAG
GACTTGAATTCATTAGAAATTGAACTACTTACTGTAGGCTAGGTCTCAGA
TGTATGTGTGTGTTTGTAGTGTGTGTGTATTCAAAACATTCCATCCCTTC
AGCCAATGCTAATATTGTGCATGTCTGCATACATGCGTACCTGCAAGTGA
AGTCCTTATTTGCATACTTGATAAGAAAATAAGTATTCCTAGTGGTGAAT
GATTGGAATTTCATTCTTGCAGCATTTATGTATTACAGTTCATGTAATTT
TGTATCAACATATAAATCTTCAATTCTATATCAACAGGCAAACAGCAAAG
AGCTTCATCTTGTCAGACCAGAATGCCTTGCGTCCTTCCCATGGTGCAGT
AGCACAGTTGAGGGAAGATGAAGATGCGGCTTACTTCAGTTCCTACTCCC
ACTTCAGTATACACATGGACATGCTGCAGGTGTGCCCTTGCAGAAACTGT
AAAATTTTCTTACGGTTCTGTTTTGCTGTTTTAGTATCAAATAAAATATA
TAGTGCTTATTTGATGTTTAAGATTACATCATTTCACAGAACATGAATGT
TCTGGGCTTGCAAGTAAATCTATGGTGTACATTGTAGACATAAGAAGAAA
TATTGTGCCTTACAAATTGTCTTTATCTTGGCCAGGACAAGGTCCGGACA
GAGAGTTACAGGGATTTCATCCTGACCAACCAGCATCTTTTCAAGGACAA
GGTATTACTAGTCTCTTCAGAACCTGATTATTATGGTAAAAGAAGGCTGA
TGCTGTATTGTAGAGCAGAACAAATACATGTACTAGTAGTTTTCTGCTAC
CTTATCTTTGCTGTTTCAGAACAATTCTTCAGACAATGTGAAAACAAAGG
TACATTGTTGTCAGCCAAACTTCATGACAAAGCCTGATTGTGCTGGAATT
TGTGGTTGCCAACAATCCAAACTAAAGTGTGGTGCAACATTGCTAGTATA
TGGTAGGACTTAGGAGGGGAGTTGCTTGTTTACATATAAGTTATCAAGTC
AGACAATTGACGCAAAAAAATATGTTGTTTTCTTTGGTGAAAAATTGATG
TTTACAGTGAAACCTGAATGTGTCCCCAGGTTGTTCTGGATGTTGGGTGT
GGTACAGGGATTCTCTCCATGTTTGCTGCCAGAGCTGGAGCTAGTCAGGT
GATCGCTGTGGACCAATCAGAGATCATCTACAAAGCCATGGATATTGTCA
GGTATTACATGTAGCTGTCATTGTGTGTGTCAAACATTTTTTGTTTTTTT
CCGTCCAAAATTTGTGTTTATTCTTTTTGTTCTGAAATCCATAGATTATT
ATTGCTTTGTCACGTTGACAACAAGAGTTTTTTCTCTGTCCCTCCAGGGA
AAACCATCTAGATCACATCATCAAGTTGGTGAAAGGTCGGGTGGAGGACA
TTCAACTACCAGTTGAGAAGGTTGACGTTATCATCTCTGAGTGGATGGTG
AGTTGATGTATTACTGTTGGTTAAATATGGTTTTAAATATCTCGGTCTAC
GTAATGTTACCCCAATCTGTGTAACACCCCCTTTTCGCTAGAGACTGTGA
CTGCTGAGCGACCCAAGATTTGACAGGTCGCTAAACAAATTTCATAGACA
AAGAACAAATCTTTTTACATTTTGTGGATTTTGTGGTCTTTCAAACCATA
CTTTGCATATGAAATACGGTCACACAAATCAAATTTTATCCAGCATTTGC
CGTTTAGTGGAAAAGGGGTCCAAGCAAACTCTATTGGTTATGATAACTTA
TTACTACACTAGCATATGTAAGTATAGGGTGGATTGGTAGCTAGTACTTA
CACATGTGTTTGTATTTTACCAGGGTTATTTCCTGCTGTTTGAGTCCATG
TTGGACACAGTCCTGTACGCTCGGGATCGCTGGCTGGCACCCGATGGCTC
AGGTGAGCAATTTTTTTTTCTAATTCTAATCAGTACATAGATCTGTATGG
ATGCTATGAAAGCTCTACCCAACAGTATTATACCGGTAGTAAAGACTTTA
GGATTGCTCTGTGGAAATGATATTTCATGAAGACAGTATGCTTTTAGTAG
AATTCTAAAACAATTAGTATTAGAGTAAAACTCTCAAACTACTGTTCTTT
TATTTTCATCCCTATTGTACAGGGAGATGGTCAAAAATATGCAAAGTGAC
AAGAATAGAATAATGGGACTAGGACCAACTGTGAACCATCAATGTAGAAA
CACCTCTAGATAATGTTTCACATACATATTTATTTGTAATTTTCTGTCTT
TCCGTGTGCTTCTTGTAACATCTAAGGTGGATATACCTTTATTCCATACA
CTTTTGCAGTTTACCCTGACAGATGTACACTCAGTCTGGTTGCCATTGGT
AACGCAAAGATGCACAGCAACCGAGTTGCATTCTGGGACGACGTCTACGG
CTTCAAGATGACCTGCATGAGGTCAGAGGTCACCAGGGAGGGGTCGGTTG
AGGAGATTGACCCAGAAACTGTGATGTCAGAGCCTTCTCTAATCAAGGTG
AACAACAAACTGCAATTTAACCTTGGAGAAACTCCTGTACATGCATCCTT
TTGTTGCTATATTTTACATTGACACTATGATTGAATACTCTAGCCTCCAT
CGTACAGTATAGACTCTACAGTACAGGTCAGGCTTTTTTTGCTATAATGT
GCTTTTTTTTTGTTATGTACTAGTTTCGATTGTACTCGGTAGGAGATGGC
TTACAAGAAACCTCAGGTACAATCATCAGAGCTAATATACATAGTAGAAG
TAGGGTAGGAGTGACCAACACTGTTGTAGGGATCCCTTCCAAGCAGCTCT
GTCCAGTGGGTCCACGCTGGTTATAAGGCCGCACACCATTGAAATGTCCC
TCCTGACACACTCCAACCAAGATACAACATAAAGAAACACATTATAAGCA
CGAAAACAGCCTTACCATACAGCCTGGTAAGGAGGCTAGAGCACTCCTTC
TTTTGAATAGTTCTTTATGTCTGACATCACAATCATGGTTTTCTCACAGA
TGGTGGACTGCTGCTCGGTGTCAGTAGCTGAGTTGGATTTTACAGCTGAC
TTCAGTTTAACAGCCACCAGAGATGGGACATGCACGGTTAGTGGGTTATT
AGCATCTGCACAGAGATACATGATGAGAAGCAGTTTTGTATCTGATAGCT
AATCAAATTAAAACAGTCATGATTGCATTTGCATTTGCATTTTGCAAAAT
GAGGGAGGATGGGAAATATGAGGATCGTGTCATGTATTTCACTGTTATTT
TTTTTCTTTTAAGAAATATGATTTATTGAGTAAAGAATAGGACCTAGTAT
GAAAATGGCTTTCAGTGAAATCTACTTTTAAAGATTACATTTGCATCAAA
ACTTTTTCACTGCTTCCTTTGCAAAGGGTATTGGTGGCTACTTTGACATC
ATGTTTGAGAAAAACTGCAACAACAAGGTGAGTTTGCTATTGAACCTCAG
AGCGACAGGAAATCTTTGTTCTTAGGATGAATGGATTTGTTGAATACGGT
TTAATGAATAACTGCACTTTCTAGCCTCGTTTGAAATTTCATTGCCTCTT
CTGCATGTTTTGACAAAGTTTTATATCAAAATTTAGTGGAGTTACTGACT
TATTTTTCCTTCTCAGGTGTACTTCTCCACTGCCCCCAACTGTATGAAAA
CACACTGGAAACAAACTCTGTTTCTACTGGAGAAACCAGTGGAGCTGAAA
CAAGGTATTTGTTTCTTTTAGATAGATTTCATGACATAGTGGTTTATCTT
ACGTTGTCTCTACCTTTATAACATTGGCCATAAAGATTACAGAATTTTTA
TGAGCTAGATCCAAGACTGGTTGTGGAAAGAGTAGCACAATTGTTTGTTT
TCTGGCAGATACAATAATATGGCTCATTTCCAAAGATGTCAGATAACGAA
ATAATGTTGCTTTTACATATGGATGTCATAATAGCAATGTGGTATCAAAT
ATGTTATCACAGTTTTCTTAAAAACAATGTACAGTGTATCTATGTTTTTT
ACTCTCATGTTTTTGTTAGCCATGTTTTTCACAGAGTTGAGCTGACAGAT
GCATGATTGTCGAAAAAAAAATCTTAACTTTTAGTATCTTTTTTTTCTTT
CTTACAGGGGACCTTCTCAGTGGAAAGATCTCTGTGAAGAAGAATAAGAA
AGATCCAAGAGCTCTCGTAGTTAGAATAGAAATCACAAACTCTGGGCAAA
TGTTAGATTTCCAGTTGCAATAACCCTTCAGTCTTTTTAATTTCGAAATA
GTAGTAAACTCACCCTCAGCTATCAATAAAAGCATTTTCTCCTATTTGAA
ATATTTTCCCCATTGTTGTTGTGAGTTGACATATGACAATGATGTGTTAG
AAAAAAGTGCCAACAAAGAACATAATTATATGTTATACTTTAGATCCCAA
TTTCAAGAAAGGTAAC

Coding sequence (CDS) from alignment at Sc0000003:4941153..4948368-

>Blg01023.1 ID=Blg01023.1|Name=Blg01023.1|organism=Branchiostoma lanceolatum|type=CDS|length=1617bp|location=Sequence derived from alignment at Sc0000003:4941153..4948368- (Branchiostoma lanceolatum)
ATGGCAGACACTGGTGACTCTAAGGGGGCGACGTCTGAATCTGCTGCTGC
GGAATCGGATGCTATGGACTGTCCCAGCCTGGAGGGTTCCGATGACTCGG
ACTGGGAGGAATGCGACGACGACGAATCAGGAGGCAGCGTTCTCGATCTG
TTCAGCAAGGAGGAACTCTCATCAGCTGAAGACGTGTTTCAGCACTGCAA
AACAGTACATCAGTTTGATGTGCAAAAATTTGTTGTCAAAAATAAGTTGG
ACATGTACGGGTACATCAAGTTCATCAACTACGTACGCAGCAAGAACCCC
TCTCCCACAGATATTAGTGATTCTTGCCAAGCTAAAGAGGCACCCTGGGA
TAGTGACCAGTACTTACAACCAGTCCTACAAGATGACCCCCTTCTCTTCT
ATGATGTGGAGGAGTGGACGACTCAGTCTCCTGTTGCCATGGAGACAGAA
GACAGTGACATCACATTGCCAGGACAACAGTACAGAGCTCTGCTGGAGAG
ACTGCACCAAGCTGAGGCTAGGTCAGAGGTCACTGAGGGGCAGCTGCATG
ATGCGCTGAAGGACATTGATCGGCTCAGGCAAACAGCAAAGAGCTTCATC
TTGTCAGACCAGAATGCCTTGCGTCCTTCCCATGGTGCAGTAGCACAGTT
GAGGGAAGATGAAGATGCGGCTTACTTCAGTTCCTACTCCCACTTCAGTA
TACACATGGACATGCTGCAGGACAAGGTCCGGACAGAGAGTTACAGGGAT
TTCATCCTGACCAACCAGCATCTTTTCAAGGACAAGGTTGTTCTGGATGT
TGGGTGTGGTACAGGGATTCTCTCCATGTTTGCTGCCAGAGCTGGAGCTA
GTCAGGTGATCGCTGTGGACCAATCAGAGATCATCTACAAAGCCATGGAT
ATTGTCAGGGAAAACCATCTAGATCACATCATCAAGTTGGTGAAAGGTCG
GGTGGAGGACATTCAACTACCAGTTGAGAAGGTTGACGTTATCATCTCTG
AGTGGATGGGTTATTTCCTGCTGTTTGAGTCCATGTTGGACACAGTCCTG
TACGCTCGGGATCGCTGGCTGGCACCCGATGGCTCAGTTTACCCTGACAG
ATGTACACTCAGTCTGGTTGCCATTGGTAACGCAAAGATGCACAGCAACC
GAGTTGCATTCTGGGACGACGTCTACGGCTTCAAGATGACCTGCATGAGG
TCAGAGGTCACCAGGGAGGGGTCGGTTGAGGAGATTGACCCAGAAACTGT
GATGTCAGAGCCTTCTCTAATCAAGATGGTGGACTGCTGCTCGGTGTCAG
TAGCTGAGTTGGATTTTACAGCTGACTTCAGTTTAACAGCCACCAGAGAT
GGGACATGCACGGGTATTGGTGGCTACTTTGACATCATGTTTGAGAAAAA
CTGCAACAACAAGGTGTACTTCTCCACTGCCCCCAACTGTATGAAAACAC
ACTGGAAACAAACTCTGTTTCTACTGGAGAAACCAGTGGAGCTGAAACAA
GGGGACCTTCTCAGTGGAAAGATCTCTGTGAAGAAGAATAAGAAAGATCC
AAGAGCTCTCGTAGTTAGAATAGAAATCACAAACTCTGGGCAAATGTTAG
ATTTCCAGTTGCAATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01023.1-exon-Sc0000003-1570713199:4948326..4948368Blg01023.1-exon-Sc0000003-1570713199:4948326..4948368Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4948072..4948185Blg01023.1-exon-Sc0000003-1570713199:4948072..4948185Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4947300..4947554Blg01023.1-exon-Sc0000003-1570713199:4947300..4947554Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4946914..4946963Blg01023.1-exon-Sc0000003-1570713199:4946914..4946963Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4946341..4946449Blg01023.1-exon-Sc0000003-1570713199:4946341..4946449Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4945668..4945842Blg01023.1-exon-Sc0000003-1570713199:4945668..4945842Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4945140..4945281Blg01023.1-exon-Sc0000003-1570713199:4945140..4945281Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4944868..4944933Blg01023.1-exon-Sc0000003-1570713199:4944868..4944933Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4944368..4944489Blg01023.1-exon-Sc0000003-1570713199:4944368..4944489Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4944122..4944221Blg01023.1-exon-Sc0000003-1570713199:4944122..4944221Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4943667..4943745Blg01023.1-exon-Sc0000003-1570713199:4943667..4943745Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4943072..4943259Blg01023.1-exon-Sc0000003-1570713199:4943072..4943259Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4942483..4942569Blg01023.1-exon-Sc0000003-1570713199:4942483..4942569Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4942142..4942192Blg01023.1-exon-Sc0000003-1570713199:4942142..4942192Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4941865..4941952Blg01023.1-exon-Sc0000003-1570713199:4941865..4941952Branchiostoma lanceolatumexon
Blg01023.1-exon-Sc0000003-1570713199:4941153..4941461Blg01023.1-exon-Sc0000003-1570713199:4941153..4941461Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01023.1Blg01023.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:4941153..4948368 -
Properties
Property NameValue
GeneIDBlg01023