Blg01023.4 (mRNA) - B. lanceolatum

Overview
NameBlg01023.4
Unique NameBlg01023.4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:4941153..4948658-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01023.4 ID=Blg01023.4|Name=Blg01023.4|organism=Branchiostoma lanceolatum|type=mRNA|length=7506bp|location=Sequence derived from alignment at Sc0000003:4941153..4948658- (Branchiostoma lanceolatum)
TGATCGGAAAAGGGCTGTGTCTCGCAAATTTCACCGGCGCTTTTCTCTCA
AATAACACAGGTTCAGACGGAAATATTTCGCGTATATGATCCTTGGAGTA
TGCTCTAAGTAAAAAACTAAGTGTATATGACGTTTTTGGGTGTTTTTTGT
CAGAATTTGAAGAAAATTTCTCGATTCTTACCCCAACACCGCACAGCACA
GCAGCGCCGCCACCGCCGCACAGCACCTTGGGATAGAATGGCTTCTCTCG
CGAGACTTTGTTTAGATTATACCAAATCTCTATTGTTAGGGGACAATGGG
TGTTTGAAAACTTATAAATAGTCATCATTGATGGTAACTAGATAAATTCT
AATGATTAAAACATTACTTTGTAGGTAATTGATTATTATATTATTGATCT
TATTCATCGCTGTGTCTTTTGAGTGGTGATATTTCAACGTATTTTACCCC
TACTGTTGAAATGGGTTTTCCAGGAAGTTACTTGGGTGAGAGACCATGTG
CTGATCAGTGATCACAGACGATATTGCGACATTTGTGGATCGATCAGCCG
GCTATACTTTGACCAGCTGTTTATCGATTAACCGGATGTAAGTGTCGATT
GCATCGTTCAGTTTTATTTCAATATTTTGTGCTGAACGTAGCTGACGGTG
CTGTGATATTACTCAGTGCATGATTCAATACTGTAGCTATAGGTAAGTTA
AAGTTCACAGATTTTTAAATGCCCTGAAATCTTTTGTCTTTTGTCACTTA
CAATACGTATGTTGAAATAATTTTGTTTCAGAGATTGATCAAGATATAAT
TACCATATGATAGCTAACTATTACAGCCTTACACAATGCTCAAAAGCAAC
AATCTAGACAGTGTGCCATATTCTCTACTCATATTCAACAGTTTTGTATA
CTGTAAAACGTTAGCGTAATGGAGAGTTATAAAACGTATTTTCAATAAAG
AAATAAACTTAGAAAAGTTGGAAAATATAAGGAATACTAAAGGCACAGTT
TAGAGAGGGCGAATCAGTTATGTCAATTGAGTCGCGATTGGCTACTTAAC
TTGATAACTTGATAGAAATGCAATAACTGATATATTCATGTATATTCCTT
TCAGTATCATATAACATGGCAGACACTGGTGACTCTAAGGGGGCGACGTC
TGAATCTGCTGCTGCGGAATCGGATGCTATGGACTGTCCCAGCCTGGAGG
GTTCCGATGACTCGGACTGGGAGGAATGCGACGACGACGAATCAGGAGGC
AGCGTTCTCGATCTGTTCAGCAAGGAGGAACTCTCATCAGCTGAAGACGT
GTTTCAGCACTGCAAAACAGTACATCAGTTTGATGTGCAAAAATTTGTTG
TCAAAAATAGTGAGTATTATACCTGATTTTCATATCCTGGATAATCATTA
AGAGCAACAATGTAAATATTCTGGGAATTTCAATCATAAAGTTGTTAGTT
GGAATGACCATTATGTACTTGTAAGCTGTTATTCTGAATCAAACTTGCTG
TTTGAACATCAAACAGCTGATCTTGTTCTTAGGTTACTTCCTTTTGTTTA
ATTGCTATAAATAGTATAATTTGATGACAAGCATTTAACGAGTGCAAAAT
TCCTTCGTTTTTCTTGTCTCTTTGATACTGGTATTAACTTTAATGTTGTC
TGTTCCATTTTTGTACTTCATTTCATTGCATTTTTCTTGTTGCAGAGTTG
GACATGTACGGGTACATCAAGTTCATCAACTACGTACGCAGCAAGGTAAA
ACAACTTTATGCGTATCGATCACTTCTGTCATTTTTCAGAGTAAATAGAA
CACTTATCTACGCTAAAAATAGTTACTCAAGCCACTGGATGAAATTTTGA
AACAGTCAGACGTTTCAGACAGCATCCGCTGTCTTTCGTCAGTGAATAAC
GATAGGACTGGAAAACCAGATTTTGTACCAAAACTCTGAATAGATATGTT
ATTGAGTTTTGGTATGAAATCTGGTTTTCCAGTCCTATCGTTAGTCACTG
ACGAAAGACAGTGGATGCTGTCTGAAACGTCTAATAATAACTGTTTCAAA
ATTTTATCCAGTTGCTTGAGTAACTATTTTTGGCGTACCTTACTACCTGA
ATGTCTAACCTTCATCAACGCAGTAGAACACTTGTCTGATTCCTCCACAT
AGAATTGAAAACAGAATATGTGTTCATTTGATAGGAATACCGATGATTGT
CCTTTTCAGAACCCCTCTCCCACAGATATTAGTGATTCTTGCCAAGCTAA
AGAGGCACCCTGGGATAGTGACCAGTACTTACAACCAGTCCTACAAGATG
ACCCCCTTCTCTTCTATGGTGAGATCATGTACTTCTAGTAATCACTAACT
CTGTTTACATTAGTGACATCGATACCCAAGTGGTTAGGCTAGTGGACACC
CGACAGGTCATAATCCTGGCATTCCTGGCTAAACATTGTACCCTTTGGAA
AGACACTTTAAATGAATTTCCTCACCTCACCTAAGTTTAAAAATGGGTAC
CTGACATCAGTTGGGGTGGTAGATTGGTGCACATGATGGAAGGAGAGGTA
TGACCGTATGGGCTTTGTCTTGCCCTTAGGGCTAGGGCTCTGGATAACAA
CCTACTGATCCTACAGCTTCTCAAAGGCTATGGTACTTTTTGTTGCTGTA
TTTACCTTAATTTTTTCAAAACTGTATGTTTAAGGTACATGTATGTTTTG
TGAAAGAATAAATCAAATGTAGTACCAACACACAAGGCAAGTTATTGAAG
GAAAGAAGAAAAAAGCAACTACCACAGTCATGAGTTAACAGTCTGGACTG
GTGACATTACCCACAGATGTGGAGGAGTGGACGACTCAGTCTCCTGTTGC
CATGGAGACAGAAGACAGTGACATCACATTGCCAGGACAACAGTACAGAG
CTCTGCTGGAGAGACTGCACCAAGCTGAGGCTAGGTCAGAGGTCACTGAG
GGGCAGCTGCATGATGCGCTGAAGGACATTGATCGGCTCAGGTATGTTAA
CCCTCAACCTGCCGAGGTAGCTATAGCATTTTGGCACCAAATTTGTATCT
CTTATGGGGTTAGATAGCCGATAGAAGGTTAACACTGGAGGACTTGAATT
CATTAGAAATTGAACTACTTACTGTAGGCTAGGTCTCAGATGTATGTGTG
TGTTTGTAGTGTGTGTGTATTCAAAACATTCCATCCCTTCAGCCAATGCT
AATATTGTGCATGTCTGCATACATGCGTACCTGCAAGTGAAGTCCTTATT
TGCATACTTGATAAGAAAATAAGTATTCCTAGTGGTGAATGATTGGAATT
TCATTCTTGCAGCATTTATGTATTACAGTTCATGTAATTTTGTATCAACA
TATAAATCTTCAATTCTATATCAACAGGCAAACAGCAAAGAGCTTCATCT
TGTCAGACCAGAATGCCTTGCGTCCTTCCCATGGTGCAGTAGCACAGTTG
AGGGAAGATGAAGATGCGGCTTACTTCAGTTCCTACTCCCACTTCAGTAT
ACACATGGACATGCTGCAGGTGTGCCCTTGCAGAAACTGTAAAATTTTCT
TACGGTTCTGTTTTGCTGTTTTAGTATCAAATAAAATATATAGTGCTTAT
TTGATGTTTAAGATTACATCATTTCACAGAACATGAATGTTCTGGGCTTG
CAAGTAAATCTATGGTGTACATTGTAGACATAAGAAGAAATATTGTGCCT
TACAAATTGTCTTTATCTTGGCCAGGACAAGGTCCGGACAGAGAGTTACA
GGGATTTCATCCTGACCAACCAGCATCTTTTCAAGGACAAGGTATTACTA
GTCTCTTCAGAACCTGATTATTATGGTAAAAGAAGGCTGATGCTGTATTG
TAGAGCAGAACAAATACATGTACTAGTAGTTTTCTGCTACCTTATCTTTG
CTGTTTCAGAACAATTCTTCAGACAATGTGAAAACAAAGGTACATTGTTG
TCAGCCAAACTTCATGACAAAGCCTGATTGTGCTGGAATTTGTGGTTGCC
AACAATCCAAACTAAAGTGTGGTGCAACATTGCTAGTATATGGTAGGACT
TAGGAGGGGAGTTGCTTGTTTACATATAAGTTATCAAGTCAGACAATTGA
CGCAAAAAAATATGTTGTTTTCTTTGGTGAAAAATTGATGTTTACAGTGA
AACCTGAATGTGTCCCCAGGTTGTTCTGGATGTTGGGTGTGGTACAGGGA
TTCTCTCCATGTTTGCTGCCAGAGCTGGAGCTAGTCAGGTGATCGCTGTG
GACCAATCAGAGATCATCTACAAAGCCATGGATATTGTCAGGTATTACAT
GTAGCTGTCATTGTGTGTGTCAAACATTTTTTGTTTTTTTCCGTCCAAAA
TTTGTGTTTATTCTTTTTGTTCTGAAATCCATAGATTATTATTGCTTTGT
CACGTTGACAACAAGAGTTTTTTCTCTGTCCCTCCAGGGAAAACCATCTA
GATCACATCATCAAGTTGGTGAAAGGTCGGGTGGAGGACATTCAACTACC
AGTTGAGAAGGTTGACGTTATCATCTCTGAGTGGATGGTGAGTTGATGTA
TTACTGTTGGTTAAATATGGTTTTAAATATCTCGGTCTACGTAATGTTAC
CCCAATCTGTGTAACACCCCCTTTTCGCTAGAGACTGTGACTGCTGAGCG
ACCCAAGATTTGACAGGTCGCTAAACAAATTTCATAGACAAAGAACAAAT
CTTTTTACATTTTGTGGATTTTGTGGTCTTTCAAACCATACTTTGCATAT
GAAATACGGTCACACAAATCAAATTTTATCCAGCATTTGCCGTTTAGTGG
AAAAGGGGTCCAAGCAAACTCTATTGGTTATGATAACTTATTACTACACT
AGCATATGTAAGTATAGGGTGGATTGGTAGCTAGTACTTACACATGTGTT
TGTATTTTACCAGGGTTATTTCCTGCTGTTTGAGTCCATGTTGGACACAG
TCCTGTACGCTCGGGATCGCTGGCTGGCACCCGATGGCTCAGGTGAGCAA
TTTTTTTTTCTAATTCTAATCAGTACATAGATCTGTATGGATGCTATGAA
AGCTCTACCCAACAGTATTATACCGGTAGTAAAGACTTTAGGATTGCTCT
GTGGAAATGATATTTCATGAAGACAGTATGCTTTTAGTAGAATTCTAAAA
CAATTAGTATTAGAGTAAAACTCTCAAACTACTGTTCTTTTATTTTCATC
CCTATTGTACAGGGAGATGGTCAAAAATATGCAAAGTGACAAGAATAGAA
TAATGGGACTAGGACCAACTGTGAACCATCAATGTAGAAACACCTCTAGA
TAATGTTTCACATACATATTTATTTGTAATTTTCTGTCTTTCCGTGTGCT
TCTTGTAACATCTAAGGTGGATATACCTTTATTCCATACACTTTTGCAGT
TTACCCTGACAGATGTACACTCAGTCTGGTTGCCATTGGTAACGCAAAGA
TGCACAGCAACCGAGTTGCATTCTGGGACGACGTCTACGGCTTCAAGATG
ACCTGCATGAGGTCAGAGGTCACCAGGGAGGGGTCGGTTGAGGAGATTGA
CCCAGAAACTGTGATGTCAGAGCCTTCTCTAATCAAGGTGAACAACAAAC
TGCAATTTAACCTTGGAGAAACTCCTGTACATGCATCCTTTTGTTGCTAT
ATTTTACATTGACACTATGATTGAATACTCTAGCCTCCATCGTACAGTAT
AGACTCTACAGTACAGGTCAGGCTTTTTTTGCTATAATGTGCTTTTTTTT
TGTTATGTACTAGTTTCGATTGTACTCGGTAGGAGATGGCTTACAAGAAA
CCTCAGGTACAATCATCAGAGCTAATATACATAGTAGAAGTAGGGTAGGA
GTGACCAACACTGTTGTAGGGATCCCTTCCAAGCAGCTCTGTCCAGTGGG
TCCACGCTGGTTATAAGGCCGCACACCATTGAAATGTCCCTCCTGACACA
CTCCAACCAAGATACAACATAAAGAAACACATTATAAGCACGAAAACAGC
CTTACCATACAGCCTGGTAAGGAGGCTAGAGCACTCCTTCTTTTGAATAG
TTCTTTATGTCTGACATCACAATCATGGTTTTCTCACAGATGGTGGACTG
CTGCTCGGTGTCAGTAGCTGAGTTGGATTTTACAGCTGACTTCAGTTTAA
CAGCCACCAGAGATGGGACATGCACGGTTAGTGGGTTATTAGCATCTGCA
CAGAGATACATGATGAGAAGCAGTTTTGTATCTGATAGCTAATCAAATTA
AAACAGTCATGATTGCATTTGCATTTGCATTTTGCAAAATGAGGGAGGAT
GGGAAATATGAGGATCGTGTCATGTATTTCACTGTTATTTTTTTTCTTTT
AAGAAATATGATTTATTGAGTAAAGAATAGGACCTAGTATGAAAATGGCT
TTCAGTGAAATCTACTTTTAAAGATTACATTTGCATCAAAACTTTTTCAC
TGCTTCCTTTGCAAAGGGTATTGGTGGCTACTTTGACATCATGTTTGAGA
AAAACTGCAACAACAAGGTGAGTTTGCTATTGAACCTCAGAGCGACAGGA
AATCTTTGTTCTTAGGATGAATGGATTTGTTGAATACGGTTTAATGAATA
ACTGCACTTTCTAGCCTCGTTTGAAATTTCATTGCCTCTTCTGCATGTTT
TGACAAAGTTTTATATCAAAATTTAGTGGAGTTACTGACTTATTTTTCCT
TCTCAGGTGTACTTCTCCACTGCCCCCAACTGTATGAAAACACACTGGAA
ACAAACTCTGTTTCTACTGGAGAAACCAGTGGAGCTGAAACAAGGTATTT
GTTTCTTTTAGATAGATTTCATGACATAGTGGTTTATCTTACGTTGTCTC
TACCTTTATAACATTGGCCATAAAGATTACAGAATTTTTATGAGCTAGAT
CCAAGACTGGTTGTGGAAAGAGTAGCACAATTGTTTGTTTTCTGGCAGAT
ACAATAATATGGCTCATTTCCAAAGATGTCAGATAACGAAATAATGTTGC
TTTTACATATGGATGTCATAATAGCAATGTGGTATCAAATATGTTATCAC
AGTTTTCTTAAAAACAATGTACAGTGTATCTATGTTTTTTACTCTCATGT
TTTTGTTAGCCATGTTTTTCACAGAGTTGAGCTGACAGATGCATGATTGT
CGAAAAAAAAATCTTAACTTTTAGTATCTTTTTTTTCTTTCTTACAGGGG
ACCTTCTCAGTGGAAAGATCTCTGTGAAGAAGAATAAGAAAGATCCAAGA
GCTCTCGTAGTTAGAATAGAAATCACAAACTCTGGGCAAATGTTAGATTT
CCAGTTGCAATAACCCTTCAGTCTTTTTAATTTCGAAATAGTAGTAAACT
CACCCTCAGCTATCAATAAAAGCATTTTCTCCTATTTGAAATATTTTCCC
CATTGTTGTTGTGAGTTGACATATGACAATGATGTGTTAGAAAAAAGTGC
CAACAAAGAACATAATTATATGTTATACTTTAGATCCCAATTTCAAGAAA
GGTAAC

Coding sequence (CDS) from alignment at Sc0000003:4941153..4948658-

>Blg01023.4 ID=Blg01023.4|Name=Blg01023.4|organism=Branchiostoma lanceolatum|type=CDS|length=1617bp|location=Sequence derived from alignment at Sc0000003:4941153..4948658- (Branchiostoma lanceolatum)
ATGGCAGACACTGGTGACTCTAAGGGGGCGACGTCTGAATCTGCTGCTGC
GGAATCGGATGCTATGGACTGTCCCAGCCTGGAGGGTTCCGATGACTCGG
ACTGGGAGGAATGCGACGACGACGAATCAGGAGGCAGCGTTCTCGATCTG
TTCAGCAAGGAGGAACTCTCATCAGCTGAAGACGTGTTTCAGCACTGCAA
AACAGTACATCAGTTTGATGTGCAAAAATTTGTTGTCAAAAATAAGTTGG
ACATGTACGGGTACATCAAGTTCATCAACTACGTACGCAGCAAGAACCCC
TCTCCCACAGATATTAGTGATTCTTGCCAAGCTAAAGAGGCACCCTGGGA
TAGTGACCAGTACTTACAACCAGTCCTACAAGATGACCCCCTTCTCTTCT
ATGATGTGGAGGAGTGGACGACTCAGTCTCCTGTTGCCATGGAGACAGAA
GACAGTGACATCACATTGCCAGGACAACAGTACAGAGCTCTGCTGGAGAG
ACTGCACCAAGCTGAGGCTAGGTCAGAGGTCACTGAGGGGCAGCTGCATG
ATGCGCTGAAGGACATTGATCGGCTCAGGCAAACAGCAAAGAGCTTCATC
TTGTCAGACCAGAATGCCTTGCGTCCTTCCCATGGTGCAGTAGCACAGTT
GAGGGAAGATGAAGATGCGGCTTACTTCAGTTCCTACTCCCACTTCAGTA
TACACATGGACATGCTGCAGGACAAGGTCCGGACAGAGAGTTACAGGGAT
TTCATCCTGACCAACCAGCATCTTTTCAAGGACAAGGTTGTTCTGGATGT
TGGGTGTGGTACAGGGATTCTCTCCATGTTTGCTGCCAGAGCTGGAGCTA
GTCAGGTGATCGCTGTGGACCAATCAGAGATCATCTACAAAGCCATGGAT
ATTGTCAGGGAAAACCATCTAGATCACATCATCAAGTTGGTGAAAGGTCG
GGTGGAGGACATTCAACTACCAGTTGAGAAGGTTGACGTTATCATCTCTG
AGTGGATGGGTTATTTCCTGCTGTTTGAGTCCATGTTGGACACAGTCCTG
TACGCTCGGGATCGCTGGCTGGCACCCGATGGCTCAGTTTACCCTGACAG
ATGTACACTCAGTCTGGTTGCCATTGGTAACGCAAAGATGCACAGCAACC
GAGTTGCATTCTGGGACGACGTCTACGGCTTCAAGATGACCTGCATGAGG
TCAGAGGTCACCAGGGAGGGGTCGGTTGAGGAGATTGACCCAGAAACTGT
GATGTCAGAGCCTTCTCTAATCAAGATGGTGGACTGCTGCTCGGTGTCAG
TAGCTGAGTTGGATTTTACAGCTGACTTCAGTTTAACAGCCACCAGAGAT
GGGACATGCACGGGTATTGGTGGCTACTTTGACATCATGTTTGAGAAAAA
CTGCAACAACAAGGTGTACTTCTCCACTGCCCCCAACTGTATGAAAACAC
ACTGGAAACAAACTCTGTTTCTACTGGAGAAACCAGTGGAGCTGAAACAA
GGGGACCTTCTCAGTGGAAAGATCTCTGTGAAGAAGAATAAGAAAGATCC
AAGAGCTCTCGTAGTTAGAATAGAAATCACAAACTCTGGGCAAATGTTAG
ATTTCCAGTTGCAATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01023.4-exon-Sc0000003-1570713199:4948537..4948658Blg01023.4-exon-Sc0000003-1570713199:4948537..4948658Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4947963..4948185Blg01023.4-exon-Sc0000003-1570713199:4947963..4948185Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4947300..4947554Blg01023.4-exon-Sc0000003-1570713199:4947300..4947554Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4946914..4946963Blg01023.4-exon-Sc0000003-1570713199:4946914..4946963Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4946341..4946449Blg01023.4-exon-Sc0000003-1570713199:4946341..4946449Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4945668..4945842Blg01023.4-exon-Sc0000003-1570713199:4945668..4945842Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4945140..4945281Blg01023.4-exon-Sc0000003-1570713199:4945140..4945281Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4944868..4944933Blg01023.4-exon-Sc0000003-1570713199:4944868..4944933Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4944368..4944489Blg01023.4-exon-Sc0000003-1570713199:4944368..4944489Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4944122..4944221Blg01023.4-exon-Sc0000003-1570713199:4944122..4944221Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4943667..4943745Blg01023.4-exon-Sc0000003-1570713199:4943667..4943745Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4943072..4943259Blg01023.4-exon-Sc0000003-1570713199:4943072..4943259Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4942483..4942569Blg01023.4-exon-Sc0000003-1570713199:4942483..4942569Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4942142..4942192Blg01023.4-exon-Sc0000003-1570713199:4942142..4942192Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4941865..4941952Blg01023.4-exon-Sc0000003-1570713199:4941865..4941952Branchiostoma lanceolatumexon
Blg01023.4-exon-Sc0000003-1570713199:4941153..4941461Blg01023.4-exon-Sc0000003-1570713199:4941153..4941461Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01023.4Blg01023.4-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:4941153..4948658 -
Properties
Property NameValue
GeneIDBlg01023