Blg01027.4 (mRNA) - B. lanceolatum

Overview
NameBlg01027.4
Unique NameBlg01027.4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:4807254..4813144+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01027.4 ID=Blg01027.4|Name=Blg01027.4|organism=Branchiostoma lanceolatum|type=mRNA|length=5891bp|location=Sequence derived from alignment at Sc0000003:4807254..4813144+ (Branchiostoma lanceolatum)
CTTAATTCCTTTTAAATCAGCAATTGTTGACGAAGGTGCAATATCATACT GCGACAATCAAATTCCAGCACCCACTCAAAGGCCGCAGCGGATCCTAAAA TGCCCGTACTGCCAGTATCTCGCCATGAAGTCATCCCACCTGAAGAGACA CGTACGAAAGCACACGGGCGAGCGGCCGTTCAAGTGTCCTCACTGCCACT ACTCCGCCATGCGTAAGGAACACCTCCTTCGACACTTTAGCTTCAAACAC AAGGAACTGTTACGAGTGTCGTGCCAGGTACCGTAAATCCATTTAATGTT GCGGTTGGTAATTTTAGCGGTTTGGGGAAAATGAGTAGTTCACTGCATTT GATTTTGACAGTAGGAACAAATATCGCTGTCTCAAATGTCAGTGTTCATA TAGTTGCGATGATGACATTTTAGCGGTTGACGAGTGACCGTTAAACTTAA AAGTAGCTTGAATTATGTTACGGTTAACAAATCAAGAATTACAGTACTTA TTTAGCTTTAGTAATTGTATGACTGTTTCTGTGATTTCAAAGTTATTTCT CTTGAAAGTCATGCAAGTTTTTGAATGAAAAGTAGTCACTGTGTTCTGCT GCTTCAGTGCTCTGAACACACTGCAGCTGCAATCTGTCTTTCTTCAAAAC TTTCACTTTGTACAGTTCATCACAAGCTTCCTTAGCTCCCGTAGTTTTCT TTACATTTCAATAAATGTACCCTAGATTAGCTATAATTCAGACTTTTGAT TGCCTGCTTGTAATAAAGTTCTTTTGAAATTGAAATTTGACAGGAGTGCA GGTACCGAACCACGGACGAACAGAGTCTCAACCTCCACCTGAAGCTCTCC CACCCAGAAGTCTTCAACCAGGTCTACAAGTGTCGGGAGTGCGAGTTTGA GTCGCCGCGGAAGTCGCAGTACGTAGAACACACCAAGGTCCACCGTGTGT GGGAGTGTCCCATCTGCAGCTACAGCACACAGGTAACTGTGTTCCCTGTA ACAGTGTATACGTATATATATATATGTACATTGTAATTACTTTGCGAACG GGAATGCACCTATAGGCAGCAATACCTGTGCTGCATTGCTATGTGAACCT GTCAGAATTGCCTTGAGGAAGGTGACAGATGGTCACCAAGACGTTGGTTG AATAAATCACTTGGTTGTGTAAAAAGAGTCTTTTTATTCAGTGACTTAAA TTGGAATCACACAGGTAAGTATACAGTCCAGTGCTGTCACATACATACAC CCTTTTCCTTGTCCCATCCTCATCTTGAGGGTTGGGGACTATGGTCACTT TCAGCACCATCTATATCTGTATAGCTGGTATAACTGCCCTTTGGCGTAAC ACACGCGCACCATGCAGCTTTGCAGGCATGTGACATGGCAGCATCTGATA TTACTGCTAAATCACAATGTAATCACAAGTAAATGACCTGTCACACCTAA CTTTTCTTCATCTAGCTGCAGGCATTCTTCAAAGCTGTAAATATTAATGA ACCTGTAAATACTGTACATATCGTCTGTTTTCTCTGTCACAACCAGTGGA AGAGTACAACTCAACTGTTCATTGAGTTCAGTTGAAATAAAGTGGTTCAT GATCATTTTCACTTTCTTTCACTTTCACCCAGGATTGGATGACCTACAGA AGACACAAGCGGTCCCACACGGAGGAGAGGCCGTACACATGTCCAATGTG TACATACACCGCAAAACTCAAGGTAAAAGATATGGCTTTGCGTGATTCTA TCCTTGTTTGAAACTTTACCTGTGAAATGTTGGAGTGGGCAAAAAATTAC TGTTTTGAGGAAGAAAGATAAAGGTGCAAATTTCATGGAACTTATACCGT CATTCTCCTTTTTCCCGCCCAGTATTTGTTCAGCCATTTTTCCATCCATC CATCCCCATCTATTCCTTCATTTATTCATCCATCCATCCATCCATCCATC CTTCCTTCCATCTATCCATCTGCTATGAAGAATCAAATGACTTCAAATGG CCATATACTTAACTGTCAGTTATTGGTTTGTAGGTTGACCTTGAGCGACA TATCCGTGCCCACACCGGCGAGCGACCCTTCACCTGTTCGCAGTGCAGCT ACCGCGGAGCACGGAAGGACAGTCTAGTCCGGCACATGCGCACGCACACG GGCGACAAACCCTACAAGTGTCCGCTGTGTGACTTTGCCTCTGCCCAGCA GGTAAGGAGTTGTTTTAATGCAGATACAATGCAATAATAGTTATGTACAA ATGTATTATTTAGCTACCGAGGAGCGCAGAAATGACAGTCTGGTCTGACA CATGCGCACGCACACGGACGACAAACCCTACAAGTGTCTGCTGTGTGACT TTGCTGGCACAAATGTATAAGTTATTAGACAAGTTTGTCATTTGTAAGTC ATTGGAGGTTTTCTAGTTGTCTTGGTCGAGGTAAAGTAAATTGTAAAGGC TGTCACTGTGTCAGTAGTGTGTGTATGACACTTTTGTGTTCAATCAATAG CGACCCTGCCTTTGGATCAAAAGGTCAGGAGTTCGAATCTCATTGCTGAC ATGCGCATTACTGGAAAGGGTCATAATCCTTAAAACGTCACGTTACGTTA CGCCGTGGTTCATTGTGCTTGTCGAAAAGAGCTAGGGGAATTTCCCCTGT AAATACTTTATACAGTGTCTGTCACTCTCTGCCATGACCAGTGGAAGATT GAGATCACTTTCATTGTTTTACCCCCAGGGCCATCTGGTGACCCATATCC GGACCCACACGGGTGAGCGCCCCTTCACGTGTCCGTGCTGCGAATACGCC TGCTGCGACCGGTCCAGTCTGGTGAAGCACGTCCGAATCCACACCGGCGA ACGACCCTACAAGTGCCCCCACTGCCCCTTTGCAGCAATCCGAAACCAGG ACCTGAAAGGTACGATGTTAGAGACAAGATGTCAATTAAGGGTTAATGAC CCGCCCCAAGGTGTATATGGTGTCATAACGCCTGGCCATGTGCTATAACC ACCGAATAAAACCACCGAGTGAGCGAAGCGAACGAGGTGGTTTTATGAGG TGGTTATAGCACCTGGCCAGGCGTTATGACACCATATACACCGAGGAAGA GGCGGGTCATTAACGTTATCATCATATAGCTTATCCAAACTGACGCATAT AAGAGTAGACAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCG CTGGCTGTACTGCAAGTCGGGCACGTTGATCGGGTCATAGGAGAACACCA AAGAAGAAGCAGCCACGGGTGGCAGGCCATTGCACTTGAAACATTCGAAA ACTTTCAATGACAATTGCACAAACGTTTCAGAATTAGGAAAATATGCTTC TATTGCTAGCGCAGGCTTATTAGCATATCATTATCATGACCCCGAAAGCG GTCTCGGAGCCAGTTTCCTCTTTACACACAGATCGGAACCGCATCGACCC CCCGCTGATGTGGACTAGACCAGGGTTGGGATGTGGTCTGGTGCGGTTCC TGGAGAAACCGGATTCTCCTCTTTAGACTGGGACCGGGAGGCGAACTAGT CCGGGTAAAGTGGACTAGTGCGGGTAAAGTAGACTGTGTGTAAAGCGGCC CTTAGATAGAACGTGGTTTCTTTGGCCAACAGCAAATGGAACACGCGGAT ATTTTGGGAATTTAAAATTTGTTTTCCCTTTTTCATGTATTCTAAGGAAA TTTTTAGGAATTCTAAGACAATAAAGATTTTTTAAACAAGGTTAAGAAAA AGATTCATCAAATAGATAGTTATTACCCCCTCTACAAAATGCAATGGTTA TAAAGATTTTTTAAACAAGGTTAAGAATAAGATTCATCAAAAAGATACCC CCTCTACAAAATGGAACAGTTGTGTTCTGACATGATGTCATAAGTGGTGT GTTATGGCGTGATAATAGACCACTTATTGCGGGCAATGGAGGCTTCTGAT TGGTCGACGCCATCTACCTATGTGATAATATCATGTAATCCCTACTTTTG ATTCTATAGTACAAATGTACTTATCTATCTGTTTATGAATCTTTAGGGTA GTCCTTTCAGTTGCAATTCAGTCATATTTTTTTCCTTCAGACCACATCAA CATCCACACAGGACAGCGCCCGTACAAGTGTACCCAGTGTTCCTACGCAG CGGCGGACCGTTCCACGCTACGGACTCACACGAAGAAGCACGACCGAAAA GCCCGCTTTGCCTGTAAACAGTGTGAGTTTTCCTGCGCCTCCAAAGCAAC GTTGGTTAAGCATCTCAAGAAGCATAAAGGGACAAGACCTTTCAAAGTAA GTAGTATGCTCTAATAGCAACAAGTACTATTCTTCTGCAGTGGAAGAGCT AAATGTAAGTTATAATTAGGTTTAGATGTCCATTATGTAAAAACTTACAT GAGATTCTTTGGTTTTTTGAACTAGAGTGAAAGCTTCAATCTGGTAACGC TGAAGAAGAGTGACGGATGTCACTCAAAACGTCTGGAAGTAATCTCTGTA ATCTTTCCAGTCATAGAAATTGAATTGTTAACCTGGATGTCTAACCTTCA GATCAACAAGTGAAAGAAGTGAGTGAACATTTATTGCTATGACCTTAACA TTTGTTTTTACTTTCCAGTGCTCAGAGTGTGATTACGCAACTAGCAACAA AGCCTGTCTTAAGAAACATCTTAAACAACACGACGTAGACACCTTATCTT GCAAGATCTGCAACCGTGAATGCGACAACTAACAGGAGCTGATCACCCAC GTTGCAACCCACATCAAGAAAGACCCTGAGTGCCCCCCTCCCCAACATGA CGGCATCACGACAGAAACCCAGGATAACCTTGAAAACCATTTGTCTTTCC AAGATGTCACTAAACTGGAGGATGAAGGGTTGTCAGAAATTAAGGAAGAG GAAGATGTACACCCACAGAGTACCTGGACAGGTTAATAAAGAGGAGATGT CACCTTTTAAAATACCTGTAAAGGTCAAGGTCAAGTAAAACTTTGCAATG TAATTCACCAGGGCTAGTACAATGGTACAATAGCTTTGCTTAATGTGAAA AACCATGACCAAACTTACCAGACTTCTTATGATTTTAGATGATTAAAGTG GACCCTATATGTACATTGCTCCGTTCATGGTAGTACAAGGAGAAAAGTCC CATCAAGTTGGTAAGTCACTGGATAACAAAGTAAACAGCAATGTCTACGT AATGGCAATGTAAAATATACACAGTTTATTATTTTTTCCATGGACCGATT TTCTGCAATTTCCTGTAATATTCACAGTGCAAATCATTGAAATTATTTTA TACATAATCCATGTATGGCAAAACCTTTATTATGCTCCCTTTGTAATAGC CATACTAGTAGGGCAGCCCTGGCTACGGTCCTGAACAGCCAAGGAAACCA AATAAATAAAAGTCTACAAAGAACTTCTAAAAGAGGAGCATTGTTGTTAC ATTATGATATAGTTTTACATCATAGCGTTTATGCAATACACAGTGTGTAT ATACTTTTTACTTACTTTGGTACATGTGTATTTTTGTCATCTTTTGACAG AAAGAGGGATCCGGAGCACAGTATGAACTGCTAGATGAATGTTATTTTTG AGGTGTGTTACAATATGATTGAATATGAAAATCATGTGCAAAGTGTTACC ATATATGTTATTTCAACAATATTGGATAATATTAATACAAT

Coding sequence (CDS) from alignment at Sc0000003:4807254..4813144+

>Blg01027.4 ID=Blg01027.4|Name=Blg01027.4|organism=Branchiostoma lanceolatum|type=CDS|length=1101bp|location=Sequence derived from alignment at Sc0000003:4807254..4813144+ (Branchiostoma lanceolatum)
ATGAAGTCATCCCACCTGAAGAGACACGTACGAAAGCACACGGGCGAGCG
GCCGTTCAAGTGTCCTCACTGCCACTACTCCGCCATGCGTAAGGAACACC
TCCTTCGACACTTTAGCTTCAAACACAAGGAACTGTTACGAGTGTCGTGC
CAGGAGTGCAGGTACCGAACCACGGACGAACAGAGTCTCAACCTCCACCT
GAAGCTCTCCCACCCAGAAGTCTTCAACCAGGTCTACAAGTGTCGGGAGT
GCGAGTTTGAGTCGCCGCGGAAGTCGCAGTACGTAGAACACACCAAGGTC
CACCGTGTGTGGGAGTGTCCCATCTGCAGCTACAGCACACAGGATTGGAT
GACCTACAGAAGACACAAGCGGTCCCACACGGAGGAGAGGCCGTACACAT
GTCCAATGTGTACATACACCGCAAAACTCAAGGTTGACCTTGAGCGACAT
ATCCGTGCCCACACCGGCGAGCGACCCTTCACCTGTTCGCAGTGCAGCTA
CCGCGGAGCACGGAAGGACAGTCTAGTCCGGCACATGCGCACGCACACGG
GCGACAAACCCTACAAGTGTCCGCTGTGTGACTTTGCCTCTGCCCAGCAG
GGCCATCTGGTGACCCATATCCGGACCCACACGGGTGAGCGCCCCTTCAC
GTGTCCGTGCTGCGAATACGCCTGCTGCGACCGGTCCAGTCTGGTGAAGC
ACGTCCGAATCCACACCGGCGAACGACCCTACAAGTGCCCCCACTGCCCC
TTTGCAGCAATCCGAAACCAGGACCTGAAAGACCACATCAACATCCACAC
AGGACAGCGCCCGTACAAGTGTACCCAGTGTTCCTACGCAGCGGCGGACC
GTTCCACGCTACGGACTCACACGAAGAAGCACGACCGAAAAGCCCGCTTT
GCCTGTAAACAGTGTGAGTTTTCCTGCGCCTCCAAAGCAACGTTGGTTAA
GCATCTCAAGAAGCATAAAGGGACAAGACCTTTCAAATGCTCAGAGTGTG
ATTACGCAACTAGCAACAAAGCCTGTCTTAAGAAACATCTTAAACAACAC
GACGTAGACACCTTATCTTGCAAGATCTGCAACCGTGAATGCGACAACTA
A
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01027.4-exon-Sc0000003-1570713199:4807254..4807530Blg01027.4-exon-Sc0000003-1570713199:4807254..4807530Branchiostoma lanceolatumexon
Blg01027.4-exon-Sc0000003-1570713199:4808047..4808235Blg01027.4-exon-Sc0000003-1570713199:4808047..4808235Branchiostoma lanceolatumexon
Blg01027.4-exon-Sc0000003-1570713199:4808886..4808975Blg01027.4-exon-Sc0000003-1570713199:4808886..4808975Branchiostoma lanceolatumexon
Blg01027.4-exon-Sc0000003-1570713199:4809287..4809454Blg01027.4-exon-Sc0000003-1570713199:4809287..4809454Branchiostoma lanceolatumexon
Blg01027.4-exon-Sc0000003-1570713199:4809982..4810162Blg01027.4-exon-Sc0000003-1570713199:4809982..4810162Branchiostoma lanceolatumexon
Blg01027.4-exon-Sc0000003-1570713199:4811544..4811749Blg01027.4-exon-Sc0000003-1570713199:4811544..4811749Branchiostoma lanceolatumexon
Blg01027.4-exon-Sc0000003-1570713199:4812072..4813144Blg01027.4-exon-Sc0000003-1570713199:4812072..4813144Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01027.4Blg01027.4-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:4807254..4813144 +
Properties
Property NameValue
GeneIDBlg01027