Blg01521.1 (mRNA) - B. lanceolatum

Overview
NameBlg01521.1
Unique NameBlg01521.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at xfSc0001480:42..2173-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01521.1 ID=Blg01521.1|Name=Blg01521.1|organism=Branchiostoma lanceolatum|type=mRNA|length=2132bp|location=Sequence derived from alignment at xfSc0001480:42..2173- (Branchiostoma lanceolatum)
GTGAACGAGGGCGTCCTGTTTGGGAAAATATCTGCTCGATGTGTTTTGAT
TGACGTGTCTAGGTCAAGCACAAAGTTCAAGTCTCTGTGGAGCAAAGTTC
TTTTAAGCCATACTGTGTGAGACAAGAATTTGAACAAATCCGGGGCGGAA
ACGTTGGGAAAACAGCTAAAAACCGGACCGGAACTGTTCGGCATTATAAA
AAAATTATGGACCAGAGGTGAGAATCATATTAATTTCGGATGATCAGAAA
TTTGACAACATAACTTTCTGGTACAGTGTGAGGGATAGTATGTGTGATTT
TAAGTTGAATTTTATAAGTTGCTCACAATTCAATTTCGCATACTAGTATT
GAAATTAAATTTAAAAAATGAAAGCATGATTACTAAAAAGAATTTAACCA
AGAAATGTTCCCAATTCCTGTATTCTGTAAACAAAATGCTATAAATATAG
CAATGAGTTGATAAAGAATCAGTCCACAGTATATCAGTATAGTCATCCTT
TTATTGTATAATGAATGCTGATCATGAACCATGGCATTATGTCCTTTTTA
GACAATTATTCACTAGAACTCATCAATTTAGTGGTCTTTACAGGTCAATT
ACTTGAATTACAGTTCATCAACACATTTTGCATGAGTAAGGTTACTCCTT
TTAACATAACTGGGTCTTTTTTATTGTTTAGCAAGGAAGAAGAGACTAAG
AAGAAACTGAAAATCTATACAAGGACTGGTGACAAAGGTAAATTATCATT
GTTCAATTTTGTATCAATATGAATGATATGTTGATTATGGATTGATCATA
CTGTATCATGTCATGAAGATTTAGTGCTATCATCAGCTTTCATGAAGCAT
CCTCCACTTTGTGTGGATTTTTTTAGGTAAAATTCTTTAGAATTGTGATA
GGAATATGCTAAATGTATTGATGAGAAGAACCATGTAGTTGACTTTTGTT
TTCATGTAGGAAGATCAAGTTTATTTACTGGAGAGAGACGGAGTAAAGAT
GACACCATCTTTGAAGCACTAGGAACAACAGATGAGCTGTCCTGTGCAAT
AGGGTGAAGAATTTCATGTTTTATTCTCTTGTCTGTGAGTGTTTCTTACT
TTGCATGAAGGGAGTAAAGTCTGCCATAACGGATTGCCTTGATTTGCCTG
TAAAGTTAATGCTTTTTTAAGACTTGGCAAGTTGGATGGATGGGATGCAA
GACATGTACAGATATTACTATTTTAGCCTATGATCCATCCGACAGGTCCC
TATTAAAGTACCAAATATTCCAATGGGTGATGTCGACTTGATAGGGAAAC
CTAAGAGAGTAAATAGAATATCTGGCTATGCCAATATGACCTCTGTGCCA
ATTTTCATAGCATTACTTTTACACATGGAAAGATTGCAGCTTACAACTTA
TGCCCCCCTCCCTTGGAACAGGTTAGCTGGAGAGTTTGGCCATGATGCTG
GTCACCAGTTTATGGACAGGCTAGAAAAGGTAATCATCAGTTGTGCCAAA
TCATAATATAACATCGAGAGAAATTCTCTTGTTGAATTTCTTTTGCATAT
TTTTGCCCTAGGCAATGACAATTAACGGTACTGTAATCTGATGTTTACAG
ATCCAATCTTTACTTCAAGATGTGGGGTCCAACATTGCCACACCACGGAC
TAAGGCACAGGACAGAAAACTAGGTGAGAGAACATGTTCTTGACAACTTG
TACAGCCAAAATTAGCAGCAACTTTTCTGTCAGATTATACAAAAGTGCTC
TCTATCAGTTCCTAATAAAACTGCAGCAGACCACCTTGCATGTGTAGTTA
TACCTTGTAACTGAACTGTGCTATTGTTGACTTGTCATTTTCATAACTAC
AACAGACTATCTGTAAAAGGTTATACTTTTTTTGTAACACAGAAGAAAGT
TTACATCTGTCATCTTGCAATGTACAGTTGATACTGATTCCTTTTTTTTT
CTGTGGATTTTTCCAGCCCGTACAGCTTTCCCCTCTGGGTCAGTAGAGGA
GCTGGAGCGATGGATTGATGAGTACACAGAACAGCTGCCTCCCCTCACCA
ACTTTATACTGCCTGTAAGATGGTCCTGGGTTTATACCATGCATGCATAA
TGTGCACTCCTGTTGGTAGACACTTCGATAAT

Coding sequence (CDS) from alignment at xfSc0001480:42..2173-

>Blg01521.1 ID=Blg01521.1|Name=Blg01521.1|organism=Branchiostoma lanceolatum|type=CDS|length=426bp|location=Sequence derived from alignment at xfSc0001480:42..2173- (Branchiostoma lanceolatum)
ATGGACCAGAGCAAGGAAGAAGAGACTAAGAAGAAACTGAAAATCTATAC
AAGGACTGGTGACAAAGGAAGATCAAGTTTATTTACTGGAGAGAGACGGA
GTAAAGATGACACCATCTTTGAAGCACTAGGAACAACAGATGAGCTGTCC
TGTGCAATAGGGTTAGCTGGAGAGTTTGGCCATGATGCTGGTCACCAGTT
TATGGACAGGCTAGAAAAGATCCAATCTTTACTTCAAGATGTGGGGTCCA
ACATTGCCACACCACGGACTAAGGCACAGGACAGAAAACTAGCCCGTACA
GCTTTCCCCTCTGGGTCAGTAGAGGAGCTGGAGCGATGGATTGATGAGTA
CACAGAACAGCTGCCTCCCCTCACCAACTTTATACTGCCTGTAAGATGGT
CCTGGGTTTATACCATGCATGCATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01521.1Blg01521.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01521.1-exon-xfSc0001480-1570713199:1957..2173Blg01521.1-exon-xfSc0001480-1570713199:1957..2173Branchiostoma lanceolatumexon
Blg01521.1-exon-xfSc0001480-1570713199:1437..1492Blg01521.1-exon-xfSc0001480-1570713199:1437..1492Branchiostoma lanceolatumexon
Blg01521.1-exon-xfSc0001480-1570713199:1121..1214Blg01521.1-exon-xfSc0001480-1570713199:1121..1214Branchiostoma lanceolatumexon
Blg01521.1-exon-xfSc0001480-1570713199:695..752Blg01521.1-exon-xfSc0001480-1570713199:695..752Branchiostoma lanceolatumexon
Blg01521.1-exon-xfSc0001480-1570713199:501..573Blg01521.1-exon-xfSc0001480-1570713199:501..573Branchiostoma lanceolatumexon
Blg01521.1-exon-xfSc0001480-1570713199:42..207Blg01521.1-exon-xfSc0001480-1570713199:42..207Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0001480genomexfSc0001480:42..2173 -
Properties
Property NameValue
GeneIDBlg01521