Blg01796.0 (mRNA) - B. lanceolatum

Overview
NameBlg01796.0
Unique NameBlg01796.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000098:976247..980604-

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01796.0 ID=Blg01796.0|Name=Blg01796.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4358bp|location=Sequence derived from alignment at Sc0000098:976247..980604- (Branchiostoma lanceolatum)
ATGCTGAAGTCCAAAAGATTTATCTTTGCGCGCCACTTTGACGGGCTGCC
GAAGGAGTCGGACTTTCAGCTGGTGGAAGAAGAGACCCCAGAGCTGAAGG
ATGGCGGTAAGGCGGCTGCATGGCCGGGGTGGGGAGGGGGGGGGGTGAAC
TGAGAAGCACTGTATGTAATTCATAGTCTGCGTTTCTACAGGGTGTAATA
TGGTAGCTATTAATTATTGAAATACAGACTCTATGGTGGAATCACCTATA
AAAATCATAAAACGAGGCATTGTAGCCAAGTAAACACACAAAGTTCATCG
ATCACAGAAATGGGTTTCTGATGACCACACCAGTTTTAATCAAATCCGCT
CACATTACAATAGGTTCTGAGACTCCTGACAATAGGTGATCGGGGGTTGC
AGATGATATTTGCCAAAGTATGGGTAGGGAGGCAACTAAGGGGGCTGCAG
TATAGTACTACGTACCTGGGGGTAACTGATGATTCTAAACCGGTACATTA
AATCAAGCGGACGGGGACTGTATTGTCGATCCCTTCACTCTCCCAAATTC
CTACAGAAACGCACACCATAGGGACCTCCGGGGCGCATTCCATACGTTGT
GAATTATCTCCAGGTAGGGAAATGAAACGTACGCATACATCACGAGATAT
ACAGTCACCGTTACTAGACAACATGTCCTGGTGAGCTCAGTGAAGTGAAA
TTAAGACTGGGTGTTATGTCTTATGATGGGTTATGACAGACCAGACGAAA
AGCCTATGATACAGAAAGTTCAATGCACTCCTGAATGAGTCCCCTAACCC
TACCCCGCCCCTAACCAGCCGGCCAAACGCCCTCTCATCCACACTTCGAT
GATTAATGATCGGGTCAATCATTGCTGAATATGCTAACAAAATATTTCTG
TGGTGCAGTAATCGGTGCTGTCACATTCCAATCACTCTCCCGCTGATATG
TCCTCCTACAATGTATAAACAATTTTCCATTACTTTTTCGCCAGAGATTC
TTGTTGAGTCACTCTTCAACAGCGTCGACCCTTACATGCGGTATGTATTT
GTACTGTTGACATCAAAACAAGAGAGAAGAAATCACTAGTTTAACACATA
ATCGGCGTAATAAAACAATATCAAACAACTGGACTACGCAGTCATGTTTG
AAAAAAGATTAAATCCCCAAGCTGATGTAAGGGTCAGATTGTTTTTTTAC
AGCCGTTTTTTTCGATAGTAGATTTCTAAAAATAGTAGACCGGAACCATA
CATCTGCTAAGACGTCAAAACTTTCGGAGTCAAGGGCAGACAAGCCAAAT
GAACCTTAGGAATAGCGTGTCTGTTGTATTCTATCGCAAAATAGCTTATA
GAATCGCACGTGACTAGTTTGATTCTATAAATATGACAGATATATGCCGT
AGCTTTATATCTATGTTTATCATTTGAGTCTTCAGACCATATACGAGACA
GTTGCCAACGGGTATAACCATGATCGGGGAAGGATGCGGAAGGTCAGTGG
AGCAGAGATTTTGTACCGTGTATGTGACATCAAAAGCTCAGTGTAATTCA
TCTGAACTAAACAAAACAGCATTTCATTCAGTTCCAATATATATTTTACA
CGGTCAGCTTGATACAGACTGTATAGTTTTCATCATCAGTAGAATATGAT
AATCGGATGCGACTTACCCGAGCAGAAATCTAGATTACTGTACAACACAT
CTAGAAATTTAAAGCCTTCGGGAGAAAACAATGAAGTAGAAAAAGCAATT
TGTCGAAATAATGTGGAATAAAAGAAAACTCCGCAAGCATATGTGCTTCA
CTTTGTTAGCAAAAATATAATACAAATCAGAACAAAATATATTTTGGCGT
GTGCTATGCCTTCACATCTAAAATTGTATAATGATATTTACACTATCGGG
CGCTCTACACACATCTCTCCCATCATTAGAGTGATCGAGTCCAAAAGTAC
AGACTTCCCAGTGGGTACTGTCATCATGAACCAGTATGGCTGGTGCAGCC
ACGCCGTGATAGACGTCAACAAGCGGGACCCCCAGAACCCCCTCCGGAAG
GCCCCGGCAGACTACCCGAAGGACCTGCCGCTGTCTCTCCTGCTGGGAGC
CGTCGGGATGACTGGGTGAGAGTAGCAATGTTTTTTTATTTGTAGGTTCC
AAGATACATTGATCAGTGCCATTTAAGTCAGATAACGATAGCCAAAGGGC
TTGCGAAGAATATTGTATATTCATACATCACCTTCCCATGACTTTGCTGC
ATGGGTTGTGAGTAGCATAGAATCAATGCTATTCTAGATCCAAAAATCCT
GTGCGTTTTGTATACACATATGTGTGTATATCAATAAGTAAAAATAACTT
TTTGTTCCTTTTTTCAGTATGACTGCCTTCTTTGGTTTGACGAAGTTGTG
TGAACCCAAGGAGGGGGAGACGGTCTTTGTCAACGGGGCCGCGGGTGCTG
TCGGGAGTATTGTAGGCCAAATAGCTAAGATCAAGGTAACTTGTCTACAA
AGTCAAATACATTTGTATATATAGTAGGCGTGCTGTGTTTTTTTTTTTCA
TCAAAAGACTCCCGGATATAAGACGGTTATAAATTGTCAAATGGAAAGAA
ATATGAAGAAAAAATCAACAAGATTGACATTTTGACTAGGGCTGCAGGGC
GGTTGGCTCTGCCGGAAGTGACGCCAAGGTGGCCTGGCTGAAGGAACTCG
GCTTTGATGCCGCCTTCAACTACAAAACTGTGTCTTCATTGGACGCGGCT
CTGAAGGAGGCGGCACCCAATGGGATTGACTGTTACTTTGACAATGTAAG
TCACAACGACGTAGACGTTTTTAAAATGACGTCACCTACGACGTCACAAC
GAACCTAGGCCTTCCGCAACCAAATATTTATCATGTCAGAGCTAGCTTTC
AAATTTGACAAAAGAAGCTTAAGCTTGTGGCGCAGTTTTCAGACCGTTGG
TCGACGAAGCTGAGCCCCAAGTAGCTCTCTTTGTATAATTATGTTTCTAA
TGGTTTGATTTGAACAGCAACATGTCTGTTTTGTAACGAGAAATATTAAT
GATACAGTATTGAGTGCGAACAATCTTCACCTGCGTTTGTCATAATGTCC
GCAGGTTGGAGCAGACTTCAGCAGCACCGTGCTGAACCACATGAACCTGT
TCGGACGCATGGCCGTCTGTGGCAGCATCTCAACCTACCACGACAACGAA
CCGGCCAAGGGTAAGCCAAGCGTGGACTTGTGATAGACAGTTCTACATCA
TTTCATTTGCTTTAAGCATGGATTCCGGTTTTCTAGGTATCCAAAGTGTT
CGAAAGTCGCCGCAAAAACCGCGAACATAAAACCACCGCGAACATTTCTG
CATTTTATTTGTTTGTTTATTTCGTTTGTTTATTGTTTCGCACATGTACA
AGTATTTTGAAACAAAGAAATACAGGGCAAAAAATATGCGGGGGGGGGGC
AGAAGCCTAGTTGACTTTTCGTGGGCTAACAATAGGAATCATACCATGAA
TTGTACATAACTCAAAACTAAGCAAAATTAACAATAGAAAATAAGTTGAA
CTTATATCATAAATCCTAATAGATGAACAGATAGGAGGAAATACAAAATG
AATTCTAAAGTATTGAACATAATAAGGTGCGTAATAGGATCAATGCTAAT
CATAATTAACAAATTGTGAAGTAATAGATAAAAAATTAAAACATATTACA
CTGTAATCATCAAACACTAATAGTCAAATATCAATGGAAAAAGGCAAACA
TTTGCAGTACTTCCCTGGGTTGTTAAGTGTTTGATATTCTATTTCCAGGT
CCGTACCCGTTCGTGACGATCCTGTCCAAGCAGCTGTCCCTCAGGGGGTT
TAAGGTCCCTCGCTGGTTCAACGAATGGCCGAAGGGAATGGATCAAATGG
TGCAGTGGATCAAAGAGGTAGGTGCCTCATGACGTCAGCAGTCCACCATA
TTATTTGCTATTTACTGCACAGTTGAATATTATAAATATATCGATTGCAG
TACTTCATAAGTGTTTTACGTATCACAAAAAACCAAACATGTAAATTATG
ATGCCAACTTATACATACATACAATGCATTGTACAAAAGCACGTCAAACG
TCTGTGTTAAAATGTCGGCTGATTTTACATTACTTCTCAACTCAACTCAA
CTCTAGTCTGAACTAAGTAAGCCTTGATTCATTGCTATGTATTTTCACTA
TCCCTACTCTATTTGTTGTACCACAGGGAAAGATCAAGTACAGGGAACAC
GTGACCGAAGGTTTTGAAAACATGCCCAAAGCTTTCATCGGCATGTTTGT
GGGAGAGAACACCGGCAAGGCTGTGGTCAAGCTCCGAGAAGAAACCTCGT
GGCTATAA

Coding sequence (CDS) from alignment at Sc0000098:976247..980604-

>Blg01796.0 ID=Blg01796.0|Name=Blg01796.0|organism=Branchiostoma lanceolatum|type=CDS|length=1026bp|location=Sequence derived from alignment at Sc0000098:976247..980604- (Branchiostoma lanceolatum)
ATGCTGAAGTCCAAAAGATTTATCTTTGCGCGCCACTTTGACGGGCTGCC
GAAGGAGTCGGACTTTCAGCTGGTGGAAGAAGAGACCCCAGAGCTGAAGG
ATGGCGAGATTCTTGTTGAGTCACTCTTCAACAGCGTCGACCCTTACATG
CGACCATATACGAGACAGTTGCCAACGGGTATAACCATGATCGGGGAAGG
ATGCGGAAGAGTGATCGAGTCCAAAAGTACAGACTTCCCAGTGGGTACTG
TCATCATGAACCAGTATGGCTGGTGCAGCCACGCCGTGATAGACGTCAAC
AAGCGGGACCCCCAGAACCCCCTCCGGAAGGCCCCGGCAGACTACCCGAA
GGACCTGCCGCTGTCTCTCCTGCTGGGAGCCGTCGGGATGACTGGTATGA
CTGCCTTCTTTGGTTTGACGAAGTTGTGTGAACCCAAGGAGGGGGAGACG
GTCTTTGTCAACGGGGCCGCGGGTGCTGTCGGGAGTATTGTAGGCCAAAT
AGCTAAGATCAAGGGCTGCAGGGCGGTTGGCTCTGCCGGAAGTGACGCCA
AGGTGGCCTGGCTGAAGGAACTCGGCTTTGATGCCGCCTTCAACTACAAA
ACTGTGTCTTCATTGGACGCGGCTCTGAAGGAGGCGGCACCCAATGGGAT
TGACTGTTACTTTGACAATGTTGGAGCAGACTTCAGCAGCACCGTGCTGA
ACCACATGAACCTGTTCGGACGCATGGCCGTCTGTGGCAGCATCTCAACC
TACCACGACAACGAACCGGCCAAGGGTCCGTACCCGTTCGTGACGATCCT
GTCCAAGCAGCTGTCCCTCAGGGGGTTTAAGGTCCCTCGCTGGTTCAACG
AATGGCCGAAGGGAATGGATCAAATGGTGCAGTGGATCAAAGAGGGAAAG
ATCAAGTACAGGGAACACGTGACCGAAGGTTTTGAAAACATGCCCAAAGC
TTTCATCGGCATGTTTGTGGGAGAGAACACCGGCAAGGCTGTGGTCAAGC
TCCGAGAAGAAACCTCGTGGCTATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01796.0-exon-Sc0000098-1570713199:980499..980604Blg01796.0-exon-Sc0000098-1570713199:980499..980604Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:979565..979610Blg01796.0-exon-Sc0000098-1570713199:979565..979610Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:979113..979169Blg01796.0-exon-Sc0000098-1570713199:979113..979169Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:978490..978675Blg01796.0-exon-Sc0000098-1570713199:978490..978675Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:978120..978237Blg01796.0-exon-Sc0000098-1570713199:978120..978237Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:977810..977965Blg01796.0-exon-Sc0000098-1570713199:977810..977965Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:977395..977500Blg01796.0-exon-Sc0000098-1570713199:977395..977500Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:976688..976806Blg01796.0-exon-Sc0000098-1570713199:976688..976806Branchiostoma lanceolatumexon
Blg01796.0-exon-Sc0000098-1570713199:976247..976378Blg01796.0-exon-Sc0000098-1570713199:976247..976378Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01796.0Blg01796.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000098genomeSc0000098:976247..980604 -
Properties
Property NameValue
GeneIDBlg01796