Blg02870.0 (mRNA) - B. lanceolatum

Overview
NameBlg02870.0
Unique NameBlg02870.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000037:1717120..1725391-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg02870.0 ID=Blg02870.0|Name=Blg02870.0|organism=Branchiostoma lanceolatum|type=mRNA|length=8272bp|location=Sequence derived from alignment at Sc0000037:1717120..1725391- (Branchiostoma lanceolatum)
CATTAATAATGCAAAGTGTCCTTTGTTGGAACAATGCCAATAGCCATTAT
AGGTGAGGATAATCGTAACAAAACAAGCTGTGCAAAACACAATTACACCG
GCAATTTTCCACTTTTAATAGGATTTTATCTATATGAATTTTGCCTGGGA
AACAAACACAATTTTTCTTTGCTCTGAACCTGTAGTTAAACATGATTACA
TACAGTTGTAGTTGTATCCATTATCATTTTCTAAATCTTTCAGTTTCAGT
TGTAAATATATTTTGAAAGGAAAACTTCTGTACCATTCAGCTTTAATTTA
AGTGCAGAGCTGTGTAGGTATGGCCCTGGCTTACTTTTCATACAACACTC
TCCATGCATTTACAATACTTTCATAGTCCTGCCTTTGATGTACTTGACAA
TTACTAACAGTGGTTTAGTGCACGGTATGCTGCTGGTATTCCATGTCTAA
AGCGATGTAGTGTAAAGGGCCGTCATGCTTACTTCTCTTCAATGTCATAC
CTTTGGATCATGTTACAAGTCACTTGACACTCAGTGTGGACTGAGTTCAT
GAGAACCAAAGTGCACTACTAAGGACTTGTTTAACATCACTTTATCTGGC
CTTAATCTGTTAACAGACAACACCCATGGGAGGGCTGCAATGAAAAGGTG
CAGAGCAAACCCTAGCATCTTCTAAGTACAAAATGTACTGTATATTCTAT
TGCTTTCTCACACAGTGTTTAAGTACTGTGTGGTGGCATTATAAGAAATT
AGAAGAAACACAATTTGGAAACTACACTCTGTAGGGTTTATTACCATTAC
TGTTAGTATAATTCATTGAGAAAAGATTGTGTTTACCTTCTTGAGCAGCC
AGTCCTCCAAGTAGAACTTTCTTAACAAAAACTCCACGTTCTTCTCCGGT
TCTCGCACTTCTTCCCCCGGCAATCTTAATTCCTAGAACAACAATCAAAC
AACAAAACAGCTCAATATTACTGTTTCAGACCTTGCTACTATGTATGTTA
GTAATAAAACAAACTAAGATAACTGTACTGGCATCCTTTACCTTCTAATC
TGAGTCCATCTGAAAAGGTCCCCTTTCCACTAGATGGTGATGGCTGAGCA
ACCATTGAGTGACCAAAGTTAGGTTTGTGTGAGTCAGTGTGACGCTTGAT
GTTAGAATTGGAATATTATGCAGGATGTAAAAGTATGATTTAAAAGACAA
CAAAACATATAAAACATAAAAATATGTATCCTTTATCTATGAAACTCTAT
AAGTGACATGTCAAATGTTTGGTTACTCAGTGGTGGCTCAACAATTGCAG
ACTTTGGTGGAAAGGTGGTAGAAGACAACATTTTCGCACTACTCGTTACT
GAGTTGGGAAGCAGGAAGATGAGAAGGTTAAAGAAAAGTCTCCTTACCTA
GCCCGTTCTGACAGTTGTTGAAGCCGACCCTGAAGGTGTTCCTCCTGGGT
GAACTGTCCCCACTCCTGCTGCCAGAGAAAGGCAGCGACCCTTCTCCACT
GGTGTGGGTGTCGGTGGTCTCCTCGGTCATGGTGATGGTTGAAGTTGCCA
TAGTAACATAATCTGGGTTGGAATGTTTGCTGTTGATAAAGAAAAATTAG
ACAATTTGTATCATACTGTTGATGAGATTCACATGATCTGAAAATTTTGG
AAAAGAAAATACATTTTTGCATTTCAAGGAGCCCTTGTGAAGTCACTATT
ATTGTTTTGAAATGTGTAAGACCAAGATTGTATCATAGTTCATATTTTCT
TGATAACATAGAAATGATGTAATTGAATACTGCAGTCTACTGTGTCTCTA
GGGACATCTTTATTCTGACTAGACCTTGACTTGCATCAGTTTGTCAACAA
GCTCATTGTTCAGTCTTTTCCCCTTCGGACCCTACGGGCATAAAATGACC
TATATCATAAAAATCTGATTCTAAATAAATTTTGCAATACATCGTCATAA
AATATAATCAAGTAATTAAAGAAAGACCGTGTTAAGTTTGGGTACGAATT
TGATTTAAATCAAACCCATGTAATTCTCACTATGATCTGGGGAAAAGCTA
TCATTCTAAAAGCTGTGATTAGAAAAAGCTTTTTAGCACCAAGGCCATCA
CTACAACACAGTGGGACAGGGGAAGTGATGACAACACTGTTTCAGCGCAC
TGGAATCAATAAATCAATGCATAGAGAATACTCAAGGCGACTTTTTGACT
GCCTTTTTGACAGTGAAATAATTCTCTAGAGTATCAAAACTACGTGCAAA
ATGCCAAACGTCATGATCATGAACCGTCGAAAGTATTTTGCATAGTTGAC
GTAGAATCACCAGTGAAAAAGTCATGAAGTGGCGACAAGATCTATGCAAT
GAGCCTACAAATAGATAAATTTGTTCCCAGTCTGTTACATCTTCGTCAAA
CAAACTTAAAGATATACTTGGAGAATGTAAACAAGGTTGCGTGAGCCAAG
AAAACAACGCTATCGCTACCGGATAGTCAAAACGGTGGGGGTCCAAATCT
CACCTGAAAATAGCACTCACTCCGAGGTGAATCTTTAAAAACACAGGCCC
TTCCTGGGCATCGAAGCTGTTCCTTTAGCTGCCCTGGTTCGACGACGACC
TCTTGTAGCTGTAAAAGTGCAGGGAAATCGCGACCAGACGAGAATATGTT
TAAAAGTTTAGATAAGGCCGCGTCTCAGGTTACAAAATTCCGCCATGTTA
GCGTAAGTTCCCGGCATCCCTCAGCACTGAGGAATATTTCATTTTCAAAG
GAGGGAATCAAATAAGTTGGAAATTTAAGAAGATTATGAAATACGAAAAA
CTACAAATCACTACGTAGATAGAAATATGTTGTATTTATTGATGAAGTTT
TATATACTTATAAATATAATTTTTATCAAATGTTTATGATTCGATATAAC
CTTATATTCTCTCCTCCCTAACATTTTGAGCCTAGTGGTCTAGTCTATGC
ACGTCCGGGTCACTAGAGGTCATAATGGCGGCTGTCTGGAGGTTTTACAG
AAATCACTGGAAGAAACTGACTTTTGGAGGGGTTGCCGTCGCGTTTTTAG
GCAGATATCTGAACAACCAACATCAGTAAGCTACGTTTGACATGAGCGTG
CAATGTGAAAGTGTAGCGTCGTATATTACGTCAAATACCGCCCTGGAAAA
AGAAAAGAGGGAGGGGGGCATCATGCCATGTGCAAAATTGTTATGTTGAC
GAGTTGTTGTAAATATTTATTGATTTACCAAGGACATGATAATGTCCTTT
GATTTACTGTACGATGAATAAACATAAGTATACTAAAGTTGGACCTTGAC
GTTGTGTACATTAAAAGTGCAAGTTATTCAAAAGGAACTCTATCTTATGT
TTTCCCCTTCATTTTTACAGAGAAAACCTTGTAAGAAGAGAATTTTGTGG
CAGAGCACAGGTGAGTGAATAACGACGTACTACAAGACAAGATTTTTCAC
AAAATCATCAAAGATGATGCAATATTCAGTAATTGCACGCACACACACTT
AGAGTTGTTGTTACTTCAGTCAAATGTTCCTCTTTGCGAGACTCTCCTTT
TCTGCCTGGGCTCTCCTAATAGAGATTGCTGTAACTGTTTAAGTCTTGAA
AACTTCATGGTAGTTTTAATTTTGCGGTTTGCACAGTGACCTCCCCATCG
TAGATGCATTACACTGCAAATTTGTATACATTTCCAATACATTACATCCA
TGCTACAAAATTCCTCCAACCGTGAATTCAAAACACCGCAAAACCTCCTT
TTACACCGTACTGCGAAATAAAATGGTTAAACCACTGTGAAAGTAAATGC
GTTTACTGTAGTTTGTTAAGATTTTTGTTTATTTTCAGGAATATGGCAAA
CAACCTCTACACTGCATGGGACAGACAAGAAAAGTGGTCGTCTTCCTCAA
CCCAGCTGCTTGTAATGGGTAGGAATCAAGATGGTTCTAGTTACAAACTT
TTTTGTTTGATCACTGCTGTTGCTAAGTAGGTTTTATGAAAAAGAACCCC
AAACACTTGAGAAGAGTAGGGGTGACCCAGTGTGCTTTCCTAAATACTCA
GGCTGTGGTGAAACCTAATTACACTACTAGCTAACGAAAAAGTGCTGTAT
TTTGTCCAAAGTTTGAGCTTCTTCCGCGTTTCCCTCTTTTTATAAATACG
CACCCATGCTGAAGTTTGAATTAAGTTATGTCTCATATGAACATAGTTGT
ATTAAGACTGTAACATTGACTTTCAAACACCCCAAATGATTATTACAGCC
AAATACATGATGTACAATGATTATTTCCTGTTTTTGATTTGTATTTTTTC
CTTCTTCCACAGACAAGCACGAAAGAAGTTTGAGAAAAATGCAGTCCCTC
TGCTTCATCTAGCAGGTCTAGAAGTCTCCATAATAGAGGTCAGACTCTCC
AACAACAATGAAACTTTGAAAGGGAATTTCAAATCAAGAATATGGCTTAT
GGGTGTCTCAGATCTTACTATTCTTAGGATGTGTTACTATTTGGTAACAT
TGCTATACTAGTTTGTTTGAACCTTTTTGCTGTGACATTTAAAAAATGTA
TGGAGTTATTTTACCAATGTGTTACCGTATTAACTTATATGCTTTGAAGT
TTTTGTAACGTCACGTTGTGTGAAAATATGTAACGTGTAAGGTAAATTTT
GTAACGTGTGAAAAGTTAATGATTGGCAATGAGAATATAAACCTACAGCA
TAAATGAGACCCACTGTTTTCCTTCAATATTTTTTTGTAATTTAAACATT
GATGTATCCTTCCATGCTCCAGACTGACTATGAGGGCCATGCCAAAGCCC
TAGCCAGTTTCCCGGATACCCTGCAGCGTACAGATGCAGTACTGGTGGCA
GGGGGAGATGGAACCCTCATGGAGGTACGCTCAATAGTCGTCAGTGGATA
CTGCTGGCCTCAGACACTTGCCTGTCTTCTGTTTTGTATCAGTACCATTA
CTGCATCAAGAGTCACATGTTTTCTTTCTTCATCCTCTCAAATAGGTTGT
CACTGGAATGCTCAGAAGAAGTGATCAGGTGAAATATTTGTTCTTGTTGT
AATCCTCTGATAAAAGTCTTAACTGAACATAATATTTTAAAGATTTAATT
CCTGTAAAATTTGGGTACTAATATTTCTGCTAAGTCAAAATAACACATAA
TTTTTTCTATCAGTTTCAGACCAGTAAGATACCAATAGGCATCATCCCCC
TAGGAAAAAACAACACCCTAGCCACCTCTTTGTTTGCCAGCAGAGAATCA
GAAGTCAGGTAACTTGTGAAAGTCCTCAAACTGTAGCACCACTAGAAGCT
ATTTAGTTTCTTATTTGAAATGTGCCTGAGGAGTTGCAAGCTTCTACACT
TTGTGTTGCACACTTTGAAGAGCAATGATATAGATTACTTTGCTGCATTG
ATTTATCACTTATAAGCTACTCTCAACCACTTTGTAATTATTTTTAAAAC
TTCCCTATTTTCTGTAGGTGGATAGCAGAATCAGCCATGGCAGTTATCAA
GGAGTTGACATGTCCCGTAGACGTTATGAGAATACAGCCACTACAGGTAT
AGTAGCCTTTGCTTGAAAGTAAAGTCATGTTACACCTGCAAAGTTATACC
ATTCATCAAGGATGGATAGTATCATGGTGATTTTCATCTCATGATTATAT
GAGAGTAACTGCTGATAAGTCACATGTTTTGTGTTTTCAGGACGAGAACA
GCAAGCCAGTATTTGCCACTCTTGGGATTCGATGGGGAGCCTTCAGAGAT
GCTGAGCAGAATCTGGACAAGTAAGTCTTTTGGCATAGAATGTGATGTAA
AATTGATACTTGACATACGATATGTTTCATCCTGCTGCTAGCTTTTCAGT
TGAAATACTTGCCTGACACGACCCTCAGTCCCTGTCTTCCTGTTTCAGGT
ACTGGTACATGGGTCCCCTGAAGCAGAGATTTGCCTACATTAAAAGATTA
ATGAAGGTATGTCTGTAGTACACTATGCAGCTTGTCCATTCCATTACTGA
CTCACTGATAGAATACAGCTGCCAGCATGTCTAAACCTTTAAAAAGATGT
TGACCTACAGATGATGTAACATGAAGGTTGAATATGTAGAAATATACCAT
CGTTTTTATCAACTTTTGTTACCGTTACAGGAGTGGCCTTCTGAAGTGAG
TGCAGTTCTGTCCTACAATGTACAACCTGTGGAGACTGTGATAACCAAGG
ACCCTGAACCTGAACCTGACACCAGCTGGTGGGCGTGGTTCTGGCCTTGG
AAATCAACACAAGAGGTCACCATGGAGCCAGAAGAAGGTACAGCACATGT
ACAGTAGCAATGGCATACATATGACCTCCGTCAGTCATAAAAACAAATCT
GTATTTTTTCTGCTTTGAACTTTGGATGAATATTTGCTAAGTTATTTACT
GAGTACAATACTATATTTCATATTTCATATCATTCGGATTCATCACATTG
TGAGAGGGAGGACAAACATATTTGAGCAATATCAGTCATGCTTTGGTGTA
TTCCATTTTACAGACCCAAATGAAGCTGTGATGCCCGACTCCTGGGACAC
GGAGAGAAGAGTATCTGCTGTAGAGCTGACTGCATCTACAACAAACACCA
CTTTGTCAAAGGTTGCTGCTTAGATGGTTCCTTTCTTTTCTGTTTTCATT
TTTGTTTCATTTTGTCAGATTTCCCTTGTTTACTTTGTGCGCAGAGCTAG
TGAATCATGACCTATCTTGGTCTTTTTCTTTTCAGGAAAAGCACATTGTT
GTGAGCTCAAGTCCAAAGCTCTCAAGAGAAGATTTTGTCAATTTGGGGTA
AGACTGGTACATTTTCATCCATTTATGCATTTCATTTCATGCAGAAAATT
ACTGGAGTAAATGTAGCAATATGCCGTTCTAGTTAGTTTACTTGGGATCT
CATATCCCCCATTACCAGCTATTTGAACACCCTATTAAATTAACTAGGAT
GGCAACTAGGCTAAGTTATAAGGACATGTGTTTGGGCCTTTAAAAATTGC
CACTCTTACAATCTAGGGACTTGAGTGCAAATACCAAGACACCTCCCCAA
GATGTGCCAGGACAGGCCTGGTCCAAGGTGCAGGTGGATGCATTCCAGTT
GGAACCTCAGATTCCAGAGGTAAAGTTTCCAATTTCATCCCTTCTGTGTG
TATGTGAGGAATCTGTAGTCCAAAAGAAGTGTATTGGACAATCCAATACA
CTTCTTTTCAGCATTTCTACAAAATGTGTATTGTAGTGTTGTTTCTTCAA
ACTGATTTAGTTACCACCATAGCCTTGCTACCAAATATTCTTGAAGGTAT
ATCTAGTCTACCAATACATTGATGAACTTTTATCATGTAATGATCCATCG
CTATATATAACTACTGTTATTTCTTTTGATAAATTGGTATGATAACCTCC
GAGTTGCAAGATATGTTGAACTGTTGTAATACTATATCCAAGCTTTAACT
GTAGATTTTGGATTAACACACAGTTTATTTCTTTGAATTGTATAACTTGC
AGGGCAAGGAAAGCTGGTTCAGCATTGACAATGAGCCGTATGAGGTGATG
CCCATCAAGGTCAAGATTCTTCCAAACAAACTCAGGTTCTTCTGCAATAA
GGAGGAGAGACTGACTTCAGCACAGCCTTTGTAACATGTGGTGTTGCGTT
ATGCTTACAATTCCAAAAGTACTACTAGTAAATGTTTTAGAAGTACGCGT
TGATCCCATCACTTTTTTGTGTGGATTCAAACCTCTCTCTATCTGTTGAT
TCACAAAATATTCAGTGCAAAATTTGGTGTCCCTGTACTGTACATGTATG
TGATAAGAAGATATATAATGGCTGTTGATATAATTGTTGATACAAGAGTC
TTTATTCTACTTGTAAACTTAACTGACTATTCTATAATATATCAGGAATA
GTTGGACTCAAGGATGCAGCTCTAAAACTCGTCTGAAAAGTATTTCAATT
CATTAAGTTCATCAGCCTAATTTCACAAAATACAAATGTATGTTACATTA
AATGCAATATCATAAAATAATAACTGAGTTGTGGTCTCAGTAAAATGTTA
TTAACAACATTTCATAGTAAAATAAAGTTATAGTTCATTCTTTGAGCGGC
TGAGTCTTGGTCCTTTTCGTTTCTCTCTGTCCTTTTTCTTCTTAGGTTTG
TCATGAGATGATTTAGCTGCTTGTAACATCTGCTGTTCCTGTGCCTGTAA
AATGGCATAAAAATAAAACTGCAATGTACATTTTTGTAACCTAAAGGTAT
GCATGAATAGAATATATAAATA

Coding sequence (CDS) from alignment at Sc0000037:1717120..1725391-

>Blg02870.0 ID=Blg02870.0|Name=Blg02870.0|organism=Branchiostoma lanceolatum|type=CDS|length=1239bp|location=Sequence derived from alignment at Sc0000037:1717120..1725391- (Branchiostoma lanceolatum)
ATGCAAAGTGTCCTTTGTTGGAACAATGCCAATAGCCATTATAGAGAAAA
CCTTGTAAGAAGAGAATTTTGTGGCAGAGCACAGGAATATGGCAAACAAC
CTCTACACTGCATGGGACAGACAAGAAAAGTGGTCGTCTTCCTCAACCCA
GCTGCTTGTAATGGACAAGCACGAAAGAAGTTTGAGAAAAATGCAGTCCC
TCTGCTTCATCTAGCAGGTCTAGAAGTCTCCATAATAGAGACTGACTATG
AGGGCCATGCCAAAGCCCTAGCCAGTTTCCCGGATACCCTGCAGCGTACA
GATGCAGTACTGGTGGCAGGGGGAGATGGAACCCTCATGGAGGTTGTCAC
TGGAATGCTCAGAAGAAGTGATCAGTTTCAGACCAGTAAGATACCAATAG
GCATCATCCCCCTAGGAAAAAACAACACCCTAGCCACCTCTTTGTTTGCC
AGCAGAGAATCAGAAGTCAGGTGGATAGCAGAATCAGCCATGGCAGTTAT
CAAGGAGTTGACATGTCCCGTAGACGTTATGAGAATACAGCCACTACAGG
ACGAGAACAGCAAGCCAGTATTTGCCACTCTTGGGATTCGATGGGGAGCC
TTCAGAGATGCTGAGCAGAATCTGGACAAGTACTGGTACATGGGTCCCCT
GAAGCAGAGATTTGCCTACATTAAAAGATTAATGAAGGAGTGGCCTTCTG
AAGTGAGTGCAGTTCTGTCCTACAATGTACAACCTGTGGAGACTGTGATA
ACCAAGGACCCTGAACCTGAACCTGACACCAGCTGGTGGGCGTGGTTCTG
GCCTTGGAAATCAACACAAGAGGTCACCATGGAGCCAGAAGAAGACCCAA
ATGAAGCTGTGATGCCCGACTCCTGGGACACGGAGAGAAGAGTATCTGCT
GTAGAGCTGACTGCATCTACAACAAACACCACTTTGTCAAAGGAAAAGCA
CATTGTTGTGAGCTCAAGTCCAAAGCTCTCAAGAGAAGATTTTGTCAATT
TGGGGGACTTGAGTGCAAATACCAAGACACCTCCCCAAGATGTGCCAGGA
CAGGCCTGGTCCAAGGTGCAGGTGGATGCATTCCAGTTGGAACCTCAGAT
TCCAGAGGGCAAGGAAAGCTGGTTCAGCATTGACAATGAGCCGTATGAGG
TGATGCCCATCAAGGTCAAGATTCTTCCAAACAAACTCAGGTTCTTCTGC
AATAAGGAGGAGAGACTGACTTCAGCACAGCCTTTGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg02870.0-exon-Sc0000037-1570713199:1725340..1725391Blg02870.0-exon-Sc0000037-1570713199:1725340..1725391Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1721982..1722021Blg02870.0-exon-Sc0000037-1570713199:1721982..1722021Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1721474..1721553Blg02870.0-exon-Sc0000037-1570713199:1721474..1721553Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1721004..1721079Blg02870.0-exon-Sc0000037-1570713199:1721004..1721079Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1720518..1720619Blg02870.0-exon-Sc0000037-1570713199:1720518..1720619Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1720364..1720396Blg02870.0-exon-Sc0000037-1570713199:1720364..1720396Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1720134..1720228Blg02870.0-exon-Sc0000037-1570713199:1720134..1720228Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1719846..1719924Blg02870.0-exon-Sc0000037-1570713199:1719846..1719924Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1719622..1719701Blg02870.0-exon-Sc0000037-1570713199:1719622..1719701Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1719436..1719493Blg02870.0-exon-Sc0000037-1570713199:1719436..1719493Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1719105..1719261Blg02870.0-exon-Sc0000037-1570713199:1719105..1719261Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1718781..1718878Blg02870.0-exon-Sc0000037-1570713199:1718781..1718878Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1718595..1718656Blg02870.0-exon-Sc0000037-1570713199:1718595..1718656Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1718273..1718375Blg02870.0-exon-Sc0000037-1570713199:1718273..1718375Branchiostoma lanceolatumexon
Blg02870.0-exon-Sc0000037-1570713199:1717120..1717889Blg02870.0-exon-Sc0000037-1570713199:1717120..1717889Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg02870.0Blg02870.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000037genomeSc0000037:1717120..1725391 -
Properties
Property NameValue
GeneIDBlg02870