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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL60766_cuf0 >transcript:BL60766_cuf0-protein ID=transcript:BL60766_cuf0-protein|Name=transcript:BL60766_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=346bp
YLTSQLTCSREWVSRSLTSMAAGLVSEINEEFLVCQICYNDFDRPKILPC
LHTFCQSCLEKLFTTQADRNLSCPTCRQDLCLPARGVQGLKDNFLVSKLR
DVVTKPGRPPANAQDATICRVCSTGTGATFYCVDCQEHLCPVCTDAHRRL
KLTRAHNVVSTGNFSPVMAARGDDNTSMCTRHGEINKFHCDTCHLVICLH
CVVTAHKDHRYVEIEEVAEREKKNVRRLLPVARGIAFLQQAKLNEMHSLK
QKWDARVDQTVSTVEARAKLMIDAIQELKLAKISHIQTLYAASKKELVSA
VQAAEENLSSAKTFVHFAENMDGNGTPMEVLTQARDLTGRLQXPGT Run BLAST on NCBI mRNA from alignment at Sc0000085:1196530..1200581+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL60766_cuf0 ID=transcript:BL60766_cuf0|Name=transcript:BL60766_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4052bp|location=Sequence derived from alignment at Sc0000085:1196530..1200581+ (Branchiostoma lanceolatum)
GGTACCTGACGTCACAGCTGACGTGTTCGCGCGAGTGGGTGTCCCGTTCC
CTGACAAGTATGGCAGCTGGACTTGTTAGCGAGATCAACGAGGAGTTTCT
CGTCTGTCAGATCTGCTATAACGACTTCGACCGTCCGAAGATTCTCCCCT
GTCTTCACACCTTCTGTCAGTCATGTTTGGAGAAGCTGTTTACTACCCAG
GCGGACAGAAACTTGTCGTGCCCCACCTGTCGCCAGGACCTGTGCCTCCC
CGCGCGCGGTGTGCAGGGGCTAAAGGACAACTTCCTAGTGTCCAAACTCC
GTGACGTCGTCACCAAACCAGGAAGACCGCCGGCAAACGCACAAGACGCT
ACCATATGCCGCGTCTGTTCGACCGGTACGGGCGCTACATTCTACTGTGT
GGACTGTCAGGAACACCTGTGTCCGGTGTGTACAGACGCACACCGCCGTC
TCAAGCTCACACGGGCACATAACGTCGTTTCTACAGGCAACTTTAGCCCC
GTTATGGCTGCCCGAGGGGACGACAACACCTCAATGTGCACAAGGCACGG
CGAAATCAACAAATTTCACTGCGACACCTGCCATCTGGTAATCTGTCTGC
ACTGTGTTGTCACCGCCCACAAGGATCACAGGTATGTGGAAATAGAGGAG
GTGGCGGAGAGGGAGAAAAAGAACGTAAGACGACTCCTGCCTGTAGCCCG
GGGGATCGCGTTTCTACAACAAGCTAAGCTGAATGAAATGCATTCATTGA
AGCAGAAATGGGACGCCCGAGTGGACCAGACTGTAAGCACTGTGGAGGCT
CGGGCGAAACTAATGATAGACGCCATACAAGAGTTAAAGCTAGCCAAAAT
CAGCCATATCCAGACGCTGTACGCGGCGAGCAAGAAGGAACTGGTTTCGG
CAGTGCAGGCGGCGGAGGAGAATCTCAGTTCCGCAAAGACTTTCGTTCAC
TTCGCGGAGAACATGGACGGGAATGGCACTCCTATGGAGGTACTCACACA
GGCACGTGATCTGACAGGTAGGCTACAGNACCCAGGCACGTGACCTAACA
GGTAGGCTACAGCGCTACATAGACGACGATAATAAGGGGAAAATCGAAGT
TTCCACTTCTTTGATGGACATGCAATTTTGCTCGACTGTCAGGGATGGGG
GAGACGAACTTGATCGTCTGTTCGGTAGCTTGTCTATCGGAGCGCCAATG
CCGGAACCTTGGCCGACAGTACCGACAATTCAGGCGTCTGAAACGCCCAA
GACTGTTGCCAAACCTAGCCGCACGTTGAACCCCACAGGAACCGCACGGC
TATCCACAGCCTTGGGAAAGAGGGGGAGCGGAGACGGCGAGTTTGACTGG
GCGGCGTCCGTGTTTGTCAACACCGAAGGCTTCATCATCGCGACGGACGT
GCGAAACAAACGCCTACAGGTGATGGACGAGGAAAACCTGTACGGGACTA
TCAACCTTGGCTTTGAACCGTGGGACGTGGCCTGCAGGGACAACGGTGAC
CTTCTAGTCACTGGAGATGGACACTCCATCCACGTGCTGGACACTCAAGG
GAAGGAAAAGGACACCATCAACGTGGAGGGCTTTAGGGAGAAGGACAAAC
CTTCCCGAGGCATCGCGGTGGACAGTCTGGGCCGGATCATCGTCACCATC
GGGTGGCAGGTGTTCGTGCTGCAGGCGGACGGCACGCCGGTCCACACCCT
CGCCTCCTCCTCACACCAGCTCTTCGGCAACCAGCTCCGCGTCACCACCA
ACAGCGAGAGCCAAGTCATCGTCAGCGACTGGAGAAACGACATCATCAAG
GTGTTCGGACCAAACGGGGAGTTCGTCTACGAGTTCGGGCTGTACGGGTC
CGGGGATGGATACTTCGACTACCCCACCTCTGTCCACACGGACGACCACA
ACAACACCATCGTGGCGGACAGTAAGAACCACCGAGTGTCGCAGTTCAGC
AAGGACGGCACGTTTGTACGGCACCTACTGTCCCGGGACAACGGGCTGTG
GCACCCACAAGGTGTGGCCATCACCCCGGACGGGAAACTTGTCGTCTCGG
ACAGAAGCGAAAACAGTTGCGTCAAGATATACACTTTTGACTAACTAATA
TCTGCATTTGTTCATTTCTCATCGTATCANTGCATTTGTACATTTCTCAT
CGTATCAAAATAATGGATGAACAAACAGCGTGTGATGTAAATATTTGACC
AAAACATCCATTTGGAATATTAAACAGACTCAATTCGCTCAACAGCCGTA
ACATCGAAAAACAGTCAAGACGAACTGTTTCCCATGATGCTTTATAATAG
TTGTGCCAAGTGGTTGTGAACTGTGTAACCATTTAGTGACTTTGACCCTA
GCCTGTCGTGTTTCGGTGTCGTCACGTCCGCCGGTGCCCCCAACCACCTG
TTGCCTTTCTTATGCCTTGCCGTTTGTGTGAACTGTGAAGGGTTTGCTTT
TTGAAAATTCAAGACCAAACATCAGTATGTACCTTTTTAAGACAGAAAGG
AAAATTGTGTAATTGATAATGATGTTATCACGCCGATCACGTTCCAACAT
TGGAACAAAACCGCGACTACTTCCCGTCTCTTCGCCCGGTTTCCGGTTCT
GCATTCTCAAAAATTACCACTCATCACAGTCGGAATACAAAAGCTTGAAC
TATTTCCCGGTCATGACTTTCAATTCAACTCCGGGCAGTGCAACATGGAA
ACCTCTTAGTCTTTGACAAACTTACATGTGAATTAGATAAAAGAGAAATT
TGAGGTGGTGCATATCGATTTGAGGAAGAAAGACATCGCGATAGGAAGGG
CACGAGGGATTTTGTTTGACAGAGGACATGGTTCACTTCCTGTGGAATTA
GAGCAGGCGTATATTACATATCATATTCTCCAAGCAGAGGAGTGGGTCCG
GCTGGTTTTTGACGTGTTTTAGACGTTTTTGTCAGGCTTTCGACCTTGTC
ATGTTTTGTTTTTTTGGTCTCACCAACCTTCTAGGTTGAAAGCCTGACAA
AAACGCCTAAAACACATCAAAAACCAGCCGACCCACTCCTCTACTTGGAG
TTGGAGAGTATATATATCACGAAACTATGGTGCTATATTTCAAACTGAAT
GTCTTGAAAATACTTCTCAGTTCAAAATAGGTCACTAAAATTCAACCTTG
ATATGTATTATGTTCTATGACAAAAGATTATGTTAAACTAACCCAGTAAT
CTTGAATATGCATCAAGAAATGTATTTATGTCCCGTAATAGATCGATGTA
CACTACTACATGTATATCAACATATGTAGCTTCGCGCCTGTGTTTTTACT
AGTTTTGTTGCCTAAAATAAATTGTGTTGTATCAACGCAAGCGCCTTACA
AAGGTCAAGATCAGTATAAACAGAAGCGTTATTAGATGACTGTTGTGTAT
ATTAAATATTATCCTAACCATATGACTTGTTATTTCACGACAGACGAATG
TATATGGTGAATTCGGGATATTCCATGTAAACGATTTGGGGGATCGGCCC
AGTATTAATAATTTAGGGTCACCACAAAAAAAAATGATTAAAAAAAGAAA
GCCAAGCATCGGGTAAAGATGCTAAAACCATTCTATCCCTACCGCAATGT
TTTAATGGAATATCCACGAGTTCAAGCAAGAAGTTAAACCTCCTTGGTTC
AAGTAAGGGTGAACTTTGATAGTACATACATGCATAGTACGTACTAAGAA
GAAATTTAACATTCATAGAAGATTTGCGCGAATTTAGTTCACCAATTGAC
TCGTCAACATCATGCTTCGTGCACATATTGTAGAGTACATGACTGGATTC
CTCTGGGCCTTGGAGATAAGAAATAAAACTAATATCCGGTGTTTTCTTCA
GTCAGTGTTACTTGGCAAACACTACCACATTAGCACGCATGACGTAGGTG
TCAATTATTAAGTTCAATTGTTGCTCTCAGAAGAAGCAGCCAGGAGGTTA
GAATATTATTTCAACCTCAAAATAGAAAAATCTATGATTTCATATAGCCT
CCGCATTAGGCTCTCTGCACCTTTTTTGGCTTATAATACACATTTTGCTG
AT Coding sequence (CDS) from alignment at Sc0000085:1196530..1200581+ >transcript:BL60766_cuf0 ID=transcript:BL60766_cuf0|Name=transcript:BL60766_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1041bp|location=Sequence derived from alignment at Sc0000085:1196530..1200581+ (Branchiostoma lanceolatum)
TACCTGACGTCACAGCTGACGTGTTCGCGCGAGTGGGTGTCCCGTTCCCT
GACAAGTATGGCAGCTGGACTTGTTAGCGAGATCAACGAGGAGTTTCTCG
TCTGTCAGATCTGCTATAACGACTTCGACCGTCCGAAGATTCTCCCCTGT
CTTCACACCTTCTGTCAGTCATGTTTGGAGAAGCTGTTTACTACCCAGGC
GGACAGAAACTTGTCGTGCCCCACCTGTCGCCAGGACCTGTGCCTCCCCG
CGCGCGGTGTGCAGGGGCTAAAGGACAACTTCCTAGTGTCCAAACTCCGT
GACGTCGTCACCAAACCAGGAAGACCGCCGGCAAACGCACAAGACGCTAC
CATATGCCGCGTCTGTTCGACCGGTACGGGCGCTACATTCTACTGTGTGG
ACTGTCAGGAACACCTGTGTCCGGTGTGTACAGACGCACACCGCCGTCTC
AAGCTCACACGGGCACATAACGTCGTTTCTACAGGCAACTTTAGCCCCGT
TATGGCTGCCCGAGGGGACGACAACACCTCAATGTGCACAAGGCACGGCG
AAATCAACAAATTTCACTGCGACACCTGCCATCTGGTAATCTGTCTGCAC
TGTGTTGTCACCGCCCACAAGGATCACAGGTATGTGGAAATAGAGGAGGT
GGCGGAGAGGGAGAAAAAGAACGTAAGACGACTCCTGCCTGTAGCCCGGG
GGATCGCGTTTCTACAACAAGCTAAGCTGAATGAAATGCATTCATTGAAG
CAGAAATGGGACGCCCGAGTGGACCAGACTGTAAGCACTGTGGAGGCTCG
GGCGAAACTAATGATAGACGCCATACAAGAGTTAAAGCTAGCCAAAATCA
GCCATATCCAGACGCTGTACGCGGCGAGCAAGAAGGAACTGGTTTCGGCA
GTGCAGGCGGCGGAGGAGAATCTCAGTTCCGCAAAGACTTTCGTTCACTT
CGCGGAGAACATGGACGGGAATGGCACTCCTATGGAGGTACTCACACAGG
CACGTGATCTGACAGGTAGGCTACAGNACCCAGGCACGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000085 | genome | Sc0000085:1196530..1200581 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL60766_cuf0 |
| Biotype | protein_coding |
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