transcript:BL61993_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL61993_cuf0
Unique Nametranscript:BL61993_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL61993_cuf0

>transcript:BL61993_cuf0-protein ID=transcript:BL61993_cuf0-protein|Name=transcript:BL61993_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=178bp
DILSRHGFQNIWLNPNVNANYFGNMFKERLKDTFLSNWRQKIRSFSKLGT
YSKIKTTFALENYLLAVQNKSFTNSITRLRIGAHCLEIEKGRHKNIPAEK
RMCPTCKENIEDEYHFLMICPSYNEERKRLMITCKKEITLPGTSREIFNV
LLSCPDSVSVYLGQFIYNAMQKRSRAIT
Run BLAST on NCBI

mRNA from alignment at Sc0000036:2261935..2262522-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL61993_cuf0 ID=transcript:BL61993_cuf0|Name=transcript:BL61993_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=588bp|location=Sequence derived from alignment at Sc0000036:2261935..2262522- (Branchiostoma lanceolatum)
GATATACTGTCAAGACACGGTTTCCAAAATATTTGGCTAAACCCTAATGT
CAACGCCAACTATTTTGGTAACATGTTCAAGGAACGTCTGAAGGACACAT
TTCTTTCCAACTGGAGACAAAAGATTAGGAGTTTTAGTAAACTTGGAACA
TATTCGAAAATTAAGACAACCTTCGCTCTGGAGAATTATCTTTTGGCAGT
TCAAAACAAATCCTTTACAAATAGCATAACAAGGCTGAGAATTGGTGCGC
ATTGCTTAGAAATTGAAAAGGGTCGTCACAAAAATATACCAGCCGAAAAG
AGAATGTGTCCCACCTGCAAAGAAAATATTGAAGATGAATACCATTTCCT
TATGATATGTCCATCTTATAATGAAGAAAGGAAAAGACTGATGATTACAT
GTAAGAAGGAAATAACACTACCTGGAACAAGTAGAGAAATATTTAATGTA
CTTCTGTCATGTCCTGACTCTGTATCTGTCTACCTAGGCCAATTCATATA
TAATGCTATGCAAAAGAGAAGCCGTGCCATAACGTGAAATATATCACGCC
ATTATCTTATGTATCGAGTAATGATGTTAGGTTAGTGC

Coding sequence (CDS) from alignment at Sc0000036:2261935..2262522-

>transcript:BL61993_cuf0 ID=transcript:BL61993_cuf0|Name=transcript:BL61993_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=537bp|location=Sequence derived from alignment at Sc0000036:2261935..2262522- (Branchiostoma lanceolatum)
GATATACTGTCAAGACACGGTTTCCAAAATATTTGGCTAAACCCTAATGT
CAACGCCAACTATTTTGGTAACATGTTCAAGGAACGTCTGAAGGACACAT
TTCTTTCCAACTGGAGACAAAAGATTAGGAGTTTTAGTAAACTTGGAACA
TATTCGAAAATTAAGACAACCTTCGCTCTGGAGAATTATCTTTTGGCAGT
TCAAAACAAATCCTTTACAAATAGCATAACAAGGCTGAGAATTGGTGCGC
ATTGCTTAGAAATTGAAAAGGGTCGTCACAAAAATATACCAGCCGAAAAG
AGAATGTGTCCCACCTGCAAAGAAAATATTGAAGATGAATACCATTTCCT
TATGATATGTCCATCTTATAATGAAGAAAGGAAAAGACTGATGATTACAT
GTAAGAAGGAAATAACACTACCTGGAACAAGTAGAGAAATATTTAATGTA
CTTCTGTCATGTCCTGACTCTGTATCTGTCTACCTAGGCCAATTCATATA
TAATGCTATGCAAAAGAGAAGCCGTGCCATAACGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL61993gene:BL61993Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL61993_cuf0-E1BL61993_cuf0-E1-1564476830-193359Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL61993_cuf0transcript:BL61993_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000036genomeSc0000036:2261935..2262522 -
Properties
Property NameValue
Transcript idBL61993_cuf0
Biotypeprotein_coding