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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL62047_cuf1 >transcript:BL62047_cuf1-protein ID=transcript:BL62047_cuf1-protein|Name=transcript:BL62047_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=253bp
QSCPCSHPSADMELAVTRHNLCKPPVPVAELPYILARSTLSQWIRALKPG
CAQPGFDDPTKRPVYWPEDIPWTSPSKPPKGYPDWAGAMRRVLISILHHV
GEDPETYFMPAASTGPAASTGPTASIGPAAALNETAAASNSPAAANILSH
SLSLSELSRLASPFTNTTFTMSPAYSQPITPVTSSPVTSSPVTSSPVTNT
VSSSIDPEQSPIFQDLRRPSPPVYRRAKQKRLPTPRAPSKRAKKAKVNYF
NPP Run BLAST on NCBI mRNA from alignment at Sc0000419:115100..118567- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL62047_cuf1 ID=transcript:BL62047_cuf1|Name=transcript:BL62047_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3468bp|location=Sequence derived from alignment at Sc0000419:115100..118567- (Branchiostoma lanceolatum)
CAGTCATGCCCGTGCTCACATCCTTCAGCTGGTAGGTCAGGCACCAGGTT
CAGCGGGAAATTGTCGGTATGACTTTCATACCTGGGAATAATATAAGTTA
ATTACTATCATAATTACATATTTTTATATATTCAGCATACGCTCACAAAT
AAATAAAATTTGCTACAGCAGAAACAGACTATAACCATGCATCTTGTGAT
AGAGGTAGCTAACATATTGCTGACATACCTGCCAAACTGTTCTCTCATCT
CCTTTGTCCATGGGTAAGGGACAGGAGATTTGGACACGGACTCAAAGTTA
GCCTCGCTTGAGTCGGCGAACACGTGGTTCGAGTCCACACCCCTGTCCTC
ACACCATTCCTTGTACTTGGCGACATGTGTACAACTCATTTGGCGGCTGC
TGCACGACACACAGCAAAGTTTACCGCAGTCCCGACGCTTTAGAATCATT
GTTTATTTAGCAATCAATCCCACAATAGATGTTGTCATACAATGTCTTAA
GCCATACAAACTACACCTTTGTTGGACAACGAACGCTTGTGTGACATATT
TACATTATTTACATTCATTATAATAATTTGTATCCGGGACCAAACAAAAC
TGCGAGAAGCAGACAACTTGGATCATGTGACAAAAGTGTAATAAAGAGAG
GAACGCTCCCAATGTGTAATTCATTCTCTTTTGATTCTCGAGCGCGGTTA
CTTGACATACGTTATATAAATTGTATTCATCATGGCTGGTAAACGCAACA
CGCACGAAAGGAGGTGGTTCCGAACCAACAGGGCCGCTTGTCGGGCAGCC
GTTGACATCAGTCTGAGGAACGATCTTCCCATGTGCGTGATCGGGCTTGG
TATGGATAAGGTCTGGGATTTTTATGGTCCGCGAGAGCTTCTGGCTGTTC
TGGAACCAGTAAAAGACCAGTTGCAGTCTGCCATGAAAGCTTTCCAGGAG
AGAAGGAACCGGGCGACATCAACAGACACGGCGTCAGGTAAGATATCTTA
TAATCAATATCTATGTACTTGTTACTACCGTACTTGCTTTGATAATTTGT
TGTCGATTATATTCTGGATTGTCATTTTTGTATGTCTGCTGTATATAGAC
ACAACTTGAATGTGTCAATGCAATGATTAGATACATGTATTGATTCTTAG
ACATATGTGTTTTACATACAGATATGGAGCTTGCGGTAACAAGGCATAAC
CTCTGCAAGCCACCCGTCCCAGTCGCTGAGCTGCCGTATATACTTGCGCG
GTCAACGCTATCCCAGTGGATACGGGCCCTCAAACCTGGCTGCGCACAAC
CAGGTTTCGACGACCCAACGAAAAGGCCGGTCTACTGGCCCGAGGACATC
CCCTGGACGTCTCCGTCCAAGCCACCCAAGGGATATCCAGGTAACTATGT
TTTTGATAGATCTCTAATTCTGATAGTATAGTATATATATACATGCATAT
GTGTACTAGATCATCGGCTTTTAATATGTTCTAATGTGTTTCTAGGCAGT
CAGCCCATCCAGCAAATAAAATAGCANTCCAGCAAAGAAAATAGCATTTC
TTATAATTTATATAATCATACTTTTTTATTAACTAAATGTTTATTCTAAA
TTCTTTTGTTCAGACTGGGCCGGGGCAATGAGGCGGGTGCTTATCAGCAT
TCTTCACCATGTCGGGGAAGACCCCGAAACGTACTTCATGCCCGCCGCCT
CCACCGGGCCCGCCGCCTCCACCGGGCCCACCGCCTCCATCGGGCCCGCC
GCCGCTCTCAACGAAACTGCCGCCGCCTCCAACAGTCCCGCCGCCGCCAA
CATCCTCTCTCACAGCCTCTCTCTTTCCGAACTTTCTCGACTGGCCTCAC
CATTTACCAACACAACGTTCACCATGTCCCCCGCCTATTCTCAACCCATC
ACGCCAGTCACCTCATCGCCAGTCACCTCATCGCCAGTCACCTCATCGCC
GGTCACCAACACCGTCAGCTCATCCATCGATCCGGAACAGTCACCCATCT
TTCAGGATCTACGCCGCCCTTCACCACCCGTCTACCGTCGAGCCAAACAG
AAGAGACTACCAACCCCCAGAGCCCCCAGTAAACGGGCAAAAAAGGCAAA
AGTAAATTATTTCAACCCACCGTAACTCATCCCGCAAGTAGATTTGTATG
TTTTTTTTTATGTTCTATATAGTTAGTAGTAGATTTCGGCATTTTTCATA
ACGCTTTCCAATTTACTAGTACATGTAGCATGAAAGTTCATCTGAGTTGG
TAAGAGTCATCATGAATTAAGGACTAAACTCGTTTCCTTGATTTGTTAAT
TATTTTTTTACCTTACCTCATCGCTTGTCGTGTGTTGCTATAGTATGTTT
TGATGTTAGTTAGCAAGATATTGATAATTATTACTTTTGAAACATGTTCG
TCGTAAAATCTCGGATGTTTTCGGAAATANAAAAAACTTTAATGGAATAT
AAAATACACGTATATAAGTTAGCAAGATATTGATAATTATTACTTTTGAA
ACATGTTCGTCGTAAAATCTCGGATGTTTTCGGAAATAGTCGGCTCGTAC
AAACTGCAATGATTCCTGGGATAGCATCATATTTTCATGGTCGCCATTTT
GTTTGAATTTTTGTTTGTTGTGGTGAATGTCTACGTAGTTTCAGTCTGAT
TTATCAGACCCCGACTTCAGTGTAATGTTCGCTTTATTGAACTAATTCTA
TCTGCCGTGAGTAGAGTAGCTTCAGCAGGAAATCTTTGCCATGGTCGTGA
ATAAAGAATGTATTATCTGTACAATCGATTCTGAAACTGGAGCAAAGAAT
GTTACTAGTACTTAGAACACACACTATCCCATTCTTGCCACTATTTTCAC
TATTTTGTCACAATGCATTTGTATCAATTTGTTATTATTCTCAGCCCCGT
AACCAGGTCCTGTAACAGCAAATTAAACAGAATGTTATTGACATAAACGA
TTATAAACAAAGCAACAATTGCTGGCTGAAATTGTTACCCATACTCGATA
AGTTAAATATTAAACAGAATTCGTAAATATCCAATTCGCTCCACCTCTGG
TTGGACTCCTTGGTCTGTGCGTGTTTTGTATTACGATTAGCTGACTACAA
TACATCATAAGTTAAACATTAACAGAATGGCTAAATCGCAAGCCGTGTTT
CGTAAATATGCGCTTCGCTGCCACCACTGGTTGGACATATAGTTACGTAA
CTCATGATGTCAGTAACGTTGCATTGCGGGCTTCGCGATGCCCCTTCCGG
GTGAACGTATTCGAGATCTCGAGTTTCGCCACCCGGTGGCGCTATGCGAG
CCATGTCAGTGCCGGTTTTGTATTGCGCTTCGCGCTACCGCTTCCGCGTG
GACGAATTCGAGATCTCGAGTTTAGCCCCCCGGTGGCGCTTTGCGCGCCA
CGAATTGCGCCTCTACGTGGCGCAATTCGTGTCTCGAATTTCGCCAATTC
GTGTTCAATGGCCTACCT Coding sequence (CDS) from alignment at Sc0000419:115100..118567- >transcript:BL62047_cuf1 ID=transcript:BL62047_cuf1|Name=transcript:BL62047_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2286bp|location=Sequence derived from alignment at Sc0000419:115100..118567- (Branchiostoma lanceolatum)
CAGTCATGCCCGTGCTCACATCCTTCAGCTGATATGGAGCTTGCGGTAAC
AAGGCATAACCTCTGCAAGCCACCCGTCCCAGTCGCTGAGCTGCCGTATA
TACTTGCGCGGTCAACGCTATCCCAGTGGATACGGGCCCTCAAACCTGGC
TGCGCACAACCAGGTTTCGACGACCCAACGAAAAGGCCGGTCTACTGGCC
CGAGGACATCCCCTGGACGTCTCCGTCCAAGCCACCCAAGGGATATCCAG
ACTGGGCCGGGGCAATGAGGCGGGTGCTTATCAGCATTCTTCACCATGTC
GGGGAAGACCCCGAAACGTACTTCATGCCCGCCGCCTCCACCGGGCCCGC
CGCCTCCACCGGGCCCACCGCCTCCATCGGGCCCGCCGCCGCTCTCAACG
AAACTGCCGCCGCCTCCAACAGTCCCGCCGCCGCCAACATCCTCTCTCAC
AGCCTCTCTCTTTCCGAACTTTCTCGACTGGCCTCACCATTTACCAACAC
AACGTTCACCATGTCCCCCGCCTATTCTCAACCCATCACGCCAGTCACCT
CATCGCCAGTCACCTCATCGCCAGTCACCTCATCGCCGGTCACCAACACC
GTCAGCTCATCCATCGATCCGGAACAGTCACCCATCTTTCAGGATCTACG
CCGCCCTTCACCACCCGTCTACCGTCGAGCCAAACAGAAGAGACTACCAA
CCCCCAGAGCCCCCAGTAAACGGGCAAAAAAGGCAAAAGTAAATTATTTC
AACCCACCGTAACAGTCATGCCCGTGCTCACATCCTTCAGCTGATATGGA
GCTTGCGGTAACAAGGCATAACCTCTGCAAGCCACCCGTCCCAGTCGCTG
AGCTGCCGTATATACTTGCGCGGTCAACGCTATCCCAGTGGATACGGGCC
CTCAAACCTGGCTGCGCACAACCAGGTTTCGACGACCCAACGAAAAGGCC
GGTCTACTGGCCCGAGGACATCCCCTGGACGTCTCCGTCCAAGCCACCCA
AGGGATATCCAGACTGGGCCGGGGCAATGAGGCGGGTGCTTATCAGCATT
CTTCACCATGTCGGGGAAGACCCCGAAACGTACTTCATGCCCGCCGCCTC
CACCGGGCCCGCCGCCTCCACCGGGCCCACCGCCTCCATCGGGCCCGCCG
CCGCTCTCAACGAAACTGCCGCCGCCTCCAACAGTCCCGCCGCCGCCAAC
ATCCTCTCTCACAGCCTCTCTCTTTCCGAACTTTCTCGACTGGCCTCACC
ATTTACCAACACAACGTTCACCATGTCCCCCGCCTATTCTCAACCCATCA
CGCCAGTCACCTCATCGCCAGTCACCTCATCGCCAGTCACCTCATCGCCG
GTCACCAACACCGTCAGCTCATCCATCGATCCGGAACAGTCACCCATCTT
TCAGGATCTACGCCGCCCTTCACCACCCGTCTACCGTCGAGCCAAACAGA
AGAGACTACCAACCCCCAGAGCCCCCAGTAAACGGGCAAAAAAGGCAAAA
GTAAATTATTTCAACCCACCGTAACAGTCATGCCCGTGCTCACATCCTTC
AGCTGATATGGAGCTTGCGGTAACAAGGCATAACCTCTGCAAGCCACCCG
TCCCAGTCGCTGAGCTGCCGTATATACTTGCGCGGTCAACGCTATCCCAG
TGGATACGGGCCCTCAAACCTGGCTGCGCACAACCAGGTTTCGACGACCC
AACGAAAAGGCCGGTCTACTGGCCCGAGGACATCCCCTGGACGTCTCCGT
CCAAGCCACCCAAGGGATATCCAGACTGGGCCGGGGCAATGAGGCGGGTG
CTTATCAGCATTCTTCACCATGTCGGGGAAGACCCCGAAACGTACTTCAT
GCCCGCCGCCTCCACCGGGCCCGCCGCCTCCACCGGGCCCACCGCCTCCA
TCGGGCCCGCCGCCGCTCTCAACGAAACTGCCGCCGCCTCCAACAGTCCC
GCCGCCGCCAACATCCTCTCTCACAGCCTCTCTCTTTCCGAACTTTCTCG
ACTGGCCTCACCATTTACCAACACAACGTTCACCATGTCCCCCGCCTATT
CTCAACCCATCACGCCAGTCACCTCATCGCCAGTCACCTCATCGCCAGTC
ACCTCATCGCCGGTCACCAACACCGTCAGCTCATCCATCGATCCGGAACA
GTCACCCATCTTTCAGGATCTACGCCGCCCTTCACCACCCGTCTACCGTC
GAGCCAAACAGAAGAGACTACCAACCCCCAGAGCCCCCAGTAAACGGGCA
AAAAAGGCAAAAGTAAATTATTTCAACCCACCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000419 | genome | Sc0000419:115100..118567 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL62047_cuf1 |
| Biotype | protein_coding |
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