transcript:BL62404_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL62404_cuf0
Unique Nametranscript:BL62404_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL62404_cuf0

>transcript:BL62404_cuf0-protein ID=transcript:BL62404_cuf0-protein|Name=transcript:BL62404_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=110bp
MTKMPANDATTAVTGSATQKTSRQRMKDIPAAPRLNPPQSTVQDRPNGST
WYRLQPEGQQDAKLYMDVVKKETKSKEKREKIARDDGMFSNNLFQNSGTP
PCALVSWESH
Run BLAST on NCBI

mRNA from alignment at Sc0000005:5606720..5607531-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL62404_cuf0 ID=transcript:BL62404_cuf0|Name=transcript:BL62404_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=812bp|location=Sequence derived from alignment at Sc0000005:5606720..5607531- (Branchiostoma lanceolatum)
GCTAAATGCTAACGTAGACGGTGCGCAGAGAATACATGTACAATGAAAAC
TCAACTACGCTCAAAACGGAGTCCCATGACCTAAATTCTATTTGCAATCG
TACGATGTTGCTTCTGCTACAGTTACGGAATCATCATTACTAGTAGTTAA
AGGACTTAAACTGTACCAGTGTGAGTGCCCTCTCCATTTTCTTCCTTTTC
TTGCTCATGGTGGGGTTGTTCTGCAGATGGGTGACCACGCCCTTCTTGGC
ATGTCTGTAGATGACGAAGATGCCTGCGAATGACGCCACGACGGCGGTGA
CGGGGAGCGCGACGCAGAAGACGAGCAGACAGAGGATGAAGGACATCCCG
GCGGCGCCCCGGCTGAATCCGCCCCAGTCCACGGTGCAGGACAGGCCGAA
CGGTTCCACGTGGTACCGACTCCAGCCTGAAGGGCAGCAAGACGCAAAAT
TGTACATGGATGTCGTGAAGAAAGAGACAAAATCAAAAGAAAAGAGAGAA
AAAATTGCCCGCGATGACGGAATGTTCAGTAACAATCTTTTCCAAAACTC
AGGAACCCCGCCTTGCGCGTTGGTATCATGGGAATCACACTGAACTGAAA
TGCAACATTTATAGGTGCTTTGTTGAGGGTATCAATTTTCAGAACCTGTT
TCCATAGAACACTACGGGAACTAGATGCAACATCTGAGGCACTGTCTGTG
AGAATGATATTGAATTTCAGAACCTGGTTCCACAGAACACTACGAGAACT
AAAGGCAACATTACCGGAAGAGACAAACTATTTAGTCTAATCTAAATATT
TCCAGCTTTGTA

Coding sequence (CDS) from alignment at Sc0000005:5606720..5607531-

>transcript:BL62404_cuf0 ID=transcript:BL62404_cuf0|Name=transcript:BL62404_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=333bp|location=Sequence derived from alignment at Sc0000005:5606720..5607531- (Branchiostoma lanceolatum)
ATGACGAAGATGCCTGCGAATGACGCCACGACGGCGGTGACGGGGAGCGC
GACGCAGAAGACGAGCAGACAGAGGATGAAGGACATCCCGGCGGCGCCCC
GGCTGAATCCGCCCCAGTCCACGGTGCAGGACAGGCCGAACGGTTCCACG
TGGTACCGACTCCAGCCTGAAGGGCAGCAAGACGCAAAATTGTACATGGA
TGTCGTGAAGAAAGAGACAAAATCAAAAGAAAAGAGAGAAAAAATTGCCC
GCGATGACGGAATGTTCAGTAACAATCTTTTCCAAAACTCAGGAACCCCG
CCTTGCGCGTTGGTATCATGGGAATCACACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL62404gene:BL62404Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL62404_cuf0-E1BL62404_cuf0-E1-1564476830-63213Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL62404_cuf0transcript:BL62404_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000005genomeSc0000005:5606720..5607531 -
Properties
Property NameValue
Transcript idBL62404_cuf0
Biotypeprotein_coding