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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL64007_cuf1 >transcript:BL64007_cuf1-protein ID=transcript:BL64007_cuf1-protein|Name=transcript:BL64007_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=294bp
MPESRVLVFVGPLLITAAVLQLLMAAKTHSRIGGVLGHTALPEDISINAR
EYSQHIQGSPKPVRQNSSYPKEPFISGTVPSGFLWGTSTAAYQVEGGWNT
GGKGESIWDHWAHQPGRTPLGDTACDSYHKYATDVQLGANLAMTAYRFSI
SWPRLLPDGTLAGGVNQAGVDYYNKLIDELIAHKMVPFVTMYHWDLPQAL
QTKYGGWTNASMVDYFNDYATLCFQKFGDRVKRWATFNEPWSFIVPGYGL
GVSPPQMLFGMKRRQYEVAHVVIKVPMLVPGTPTTIPSGPSRAG Run BLAST on NCBI mRNA from alignment at Sc0000326:114269..118898- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL64007_cuf1 ID=transcript:BL64007_cuf1|Name=transcript:BL64007_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4630bp|location=Sequence derived from alignment at Sc0000326:114269..118898- (Branchiostoma lanceolatum)
CAACTGTAGGAATATAAATGATGCATTGTCCTTACCTGACCTGGCCGGGT
CACGGCGTACCGGTCATGGTCCAAAGTTCACCTGTTCTCACCTGCGTGCT
GCACACCGCCCTCCATTGTGTTGTACATGTACCTGAAGCTTGTGAATGGC
GCAGCAAATTCCATGTAAACTGTTACATCTTATGGAATAGACGGGCAGTG
CACAGTAACTTGGGGTCATAGCCCCTGTCCGACAGGAGCTCCGAGGTGCC
TGAGGTGCTTCGGCCCGACTGCAGCTCGACATGCCTGAGTCCAGAGTTTT
GGTGTTCGTGGGGCCCTTGCTGATCACAGCTGCTGTTCTTCAACTTCTTA
TGGCTGCGAAGACTCACTCCAGGATAGGTGGTGTCCTTGGTCACACAGCC
TTGGTAAGAGTCGACAGCCGTTACAGATGAGTAAGGATTCCAGTAAGGTG
TACTTAACTACACTCTGACGAACCGTCTCTATTTCTATTTCTAGAATATC
TATGTCTAGCTGTAGATTTGTGAGTTTTGATATTGTTGCCATGCCAGTAT
CTGAGGTGATCGCTCGCAGTACTTGAACATATTTTATTTCACATAAACAC
GCAGTGCGCAATGGTGGAGAAGCCGAAAATTAGCATCATTGGCGTGTTTA
CAAGTGGTGCATGCGCTAGGTAAAAGATGAAAGTCTTTAAAGATGAATGT
ACTTTATATTTCTGTCCAAAGCCTGAAGATATCTCCATTAATGCCAGAGA
GTACTCCCAGCATATTCAAGGCAGCCCCAAACCAGTCCGTGAGTTACTGA
ACACTTACAATTTTCACTGTCTCCCTCTTTTCTTCATCTTGCAGCCAACA
ACTGTATTAAGAAATGCCATAACTGTAATGTTGTATACAATCACTTACGA
TAGAATAAGCTGTTTTTCCTACATGTTATTAAAGTTGTGTGTTGTCGCAA
CGACGTCTACATTTCTGGTCTTTCCCCATATTTTGTATCAAGGGAGGTGG
GTTGTCAATTTATTTCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG
TTTGTTTGCTTGTTCGTTTTTGTATATTATCCATTCATCGCTTTGCCTTG
TGACCCTAGGTCAGAACTCATCCTACCCCAAAGAACCGTTCATATCCGGG
ACCGTCCCGTCCGGCTTCCTGTGGGGCACGTCCACGGCGGCCTACCAGGT
GGAGGGCGGGTGGAACACGGGCGGGAAGGGCGAGTCCATCTGGGACCACT
GGGCGCACCAGCCCGGCAGAACTCCGCTGGGAGACACCGCGTGCGACAGC
TACCACAAGGTAGCATAGCAAGTAGTTTGTCAAATGACGGTTCGACTCCT
ATTCCTTAAGTTGTCAGAACCAGTAACGTTAACTAGTGGCCTAACCTAAG
GATACGTTGCACACTGCCATTATATGCCATTACTAACGCTATATTTTACT
TTTCTCCAAACGTAAACGTTTAACGGAAGTATCAAACGAGCCAAACAACC
CTCTAGCTCTGTAAATGTATCCGTATAGTCGGTATAACCGCCCTTTGGCA
TAACGCACCAGCTTCGCAAGCACGAGATGACTGCAGTGCGATAAATGTCG
GTTAGCTGAGGAATGAGTCCTCTCTACTTTATGTACCCTCCAGTATGCAA
CCGATGTCCAACTTGGAGCCAACCTGGCCATGACGGCCTACCGGTTCTCC
ATATCCTGGCCCCGCCTTCTCCCTGACGGCACCTTGGCAGGGGGCGTCAA
CCAGGCAGGCGTGGACTACTACAACAAGCTCATCGATGAACTGATAGCTC
ACAAGATGGTGCCTTTTGTCACGATGTACCATTGGGACCTACCGCAGGCT
CTTCAGGTGACCCATGCATTCTCCTTAAAGCAGAGCTGAATCCGCGAGTT
TCTACGACGCGGATTCAGCTCTGCTATAAGGAGAATTCAGGTAACCATGC
TACCGTGCTTTCATCTACACAAACCATCACATTATCAGATATCGATGTTG
TGCTTTATTGATTTTGATGCTCATTCGTTCTCCTTTGCAAATTTGCATCG
TGTTGTAACTCTGAGTGACCACATTAAGTTACCAGGCTCTACGAGATGGA
CTTTTGGAGGCTTATATGTGCCTTTTTTCTGATGGCATATCAGTTCTATT
ATGCTCGCCGGCTACAAGAAACCGAGTACAATAGAACTGATATGCCATTA
AAAAAGCACATTATAAGCCTAAAAGCACACCTCGCTAAAGCCGGCGTCAC
AATTCATGCGAGCGTCGGCCGAATTTGCAGATCGCCTGAAGATCGCCGAA
TTTCAAAATCGCCCGAGCGTCGACCGTATTTTTCGCTGAAAATCGGCCCC
GTCACAAATTGAACGGGGCTCGGGCGACGTCCGTCGAACACTAATAATTT
TAAATCTCCCATGAGTCACGGTACCATCTCTTGGACACCGACGAAGTCAG
AATCGACTAACCTGGTAAAAAGCCAAAAGAAACAGGAAGTATTGTTCTCG
GTGTCCACATTTTATTTATGATCATTTTTTTTTTCAATGAAGATTTAACT
TTGCAATTGTCTTTCATTAGAAAAGTTTATCAGCATTATTTGACAAGTTA
ATACAGTATCCATTATCGTTTTATGTTATAAACCAAGATGTCGTTACGTT
TTATGTATAACACGATTGGCAATGAAAAAAATACATTGCCATGGCGACGG
TAGTTATTGTTGTTGTTTTAATTTTTACTGTACCCTGCTCAGGGCACTGA
TAGGTGGTGCTGTTCATACAGGATTTCCAACGAAAAGGGCTGATGAGTAC
CTGTTCTGCCACAAATACAAACACACTCACAGACCTAGGGCCTCCCTGAA
AATCAGTGACAAGCCACTGAGGGAGCTACCCTAGTAAAAGAATACAGAAA
TAGATAAATGGATCTGAGTGGTCATGTATACATAAGCCTGACACATCTGG
TCCACAGATGTGGTTGCCTGTCTAGGTTTTCTGTCCCCAGGGGGGCTGCA
TGGTTTTCTATCCTTTACACTGCTGACTAACATTCCAAACATTCTATTGG
CTTAACATGCCTGTGGAAAAATGCCTGTGCAATTCCTAGAATATTTGCAA
TCTGCACACAATACTATACCATTTGGCTCGCCACTTAGGCGTCGCCAAAA
AAGGAGTTCGGCCGGAGCCCGTCCAAGCTCCCTTCGACACCAGCACAACG
CTCGCCCGAAGGGCGCCTTACTTTTCATGAGTCGGGTGAAACACGGTCGT
CCGATTATTGTACGAAGCCTGAGCGAGGCTCGCACGAGGCCGAAGAGTTC
GGGCGACCTCCGACAGACAAAAATCGGGTCTGAAATTGTCAGATTGTCGC
CCGACTATTGGCCGGGTGTTGGCCGTTGCTAGGGCAAACTACGGTAAACC
TGTTGACGAGCTGTCGAGCTCAAAAATCGCCGCCGAGGCCTCGCTGAATT
TAAGCGCAGCTTCCAGTGCCCGCCCCGTGAACGTCGGCAGAGCTCCGAAA
AATCGCCCGAAGCCCGCGTAATCGACAGGACGTCGGCCGTACTTCGGCCG
AAAATACCCATTTGGAGCTCGCCGACATGTCGGCTGAGCTGAATTCTTTA
TTTGTGACGGACGCTTAAGAAGACTAGACCGCATTTCAGTGGAGGTAGCT
GCGGAATCAGGTCTTCTCGCTGCGCGTGTGGTAGGCAGCGGTCCATTACA
AACGGTTCCGTGAGGGATCTTGTCACACTTTTATTGTGTTAAACTGATAT
TTTGTGTCATTTATTCTCATAAAACATTTATTCCAGACTAAGTACGGTGG
ATGGACTAATGCGAGCATGGTGGACTATTTCAACGACTACGCCACGCTGT
GCTTCCAGAAGTTCGGCGACAGAGTCAAGAGATGGGCCACCTTTAACGAG
CCCTGGTCCTTCATCGTGCCGGGCTATGGGTTAGGTGTGTCCCCTCCCCA
GATGCTCTTCGGCATGAAAAGACGCCAGTACGAAGTAGCACATGTTGTCA
TTAAGGTGAGTGACTTTCTTACCGTGGCCCACAGGTACAATGAGCGACAC
ACACCTTTTTTTTGGTGCGCACACACCTACTTTGGGTGGGCACACCCTAA
TATCTTTAGTGCGTTTACACCCCTACTTTGGGTGCGCACGCACCTCTACT
TTGGGTGCGTCACACAACCCTACTTTGGGTGCGTGTCGCCGTCGACACCC
CTGCTTAGGTTGACTCGTATAGGGTTGTGTGCGCACCCAAATTAGGTATG
TGCGCACCCAAAGTACTTTCTAGCTCTAACCAAGCTTTGCAATGTACCGG
CTCGGTTAGAGACCCTGCCTTTGGACTAGAAGTTAAAAGAGCCCTAAATG
AAAATGTGCTGAAAGACTAAAGTTGTTTTTTATCGCTAATTTCCGATGAT
GCGCCCTCCGTTATTCTCAGAATGTTTTGTTTTGAACACAATTTGCCAAC
ATATATGAAGACTGTAAATCATTTGTCAATGCCTTTTGTACAGTGGTGTT
ACCCTCATGGCGTCGAGCTCGTTGTATGCAACCTGGAATCGTGTCAGTAT
TGTTTCTATCTATCCCATACAGGCCCATGCTCGTGCCTGGCACACCTACA
ACGATTCCTTCCGGGCCCAGCAGGGCGGGG Coding sequence (CDS) from alignment at Sc0000326:114269..118898- >transcript:BL64007_cuf1 ID=transcript:BL64007_cuf1|Name=transcript:BL64007_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=5292bp|location=Sequence derived from alignment at Sc0000326:114269..118898- (Branchiostoma lanceolatum)
ATGCCTGAGTCCAGAGTTTTGGTGTTCGTGGGGCCCTTGCTGATCACAGC
TGCTGTTCTTCAACTTCTTATGGCTGCGAAGACTCACTCCAGGATAGGTG
GTGTCCTTGGTCACACAGCCTTGCCTGAAGATATCTCCATTAATGCCAGA
GAGTACTCCCAGCATATTCAAGGCAGCCCCAAACCAGTCCGTCAGAACTC
ATCCTACCCCAAAGAACCGTTCATATCCGGGACCGTCCCGTCCGGCTTCC
TGTGGGGCACGTCCACGGCGGCCTACCAGGTGGAGGGCGGGTGGAACACG
GGCGGGAAGGGCGAGTCCATCTGGGACCACTGGGCGCACCAGCCCGGCAG
AACTCCGCTGGGAGACACCGCGTGCGACAGCTACCACAAGTATGCAACCG
ATGTCCAACTTGGAGCCAACCTGGCCATGACGGCCTACCGGTTCTCCATA
TCCTGGCCCCGCCTTCTCCCTGACGGCACCTTGGCAGGGGGCGTCAACCA
GGCAGGCGTGGACTACTACAACAAGCTCATCGATGAACTGATAGCTCACA
AGATGGTGCCTTTTGTCACGATGTACCATTGGGACCTACCGCAGGCTCTT
CAGACTAAGTACGGTGGATGGACTAATGCGAGCATGGTGGACTATTTCAA
CGACTACGCCACGCTGTGCTTCCAGAAGTTCGGCGACAGAGTCAAGAGAT
GGGCCACCTTTAACGAGCCCTGGTCCTTCATCGTGCCGGGCTATGGGTTA
GGTGTGTCCCCTCCCCAGATGCTCTTCGGCATGAAAAGACGCCAGTACGA
AGTAGCACATGTTGTCATTAAGGTGCCCATGCTCGTGCCTGGCACACCTA
CAACGATTCCTTCCGGGCCCAGCAGGGCGGGGATGCCTGAGTCCAGAGTT
TTGGTGTTCGTGGGGCCCTTGCTGATCACAGCTGCTGTTCTTCAACTTCT
TATGGCTGCGAAGACTCACTCCAGGATAGGTGGTGTCCTTGGTCACACAG
CCTTGCCTGAAGATATCTCCATTAATGCCAGAGAGTACTCCCAGCATATT
CAAGGCAGCCCCAAACCAGTCCGTCAGAACTCATCCTACCCCAAAGAACC
GTTCATATCCGGGACCGTCCCGTCCGGCTTCCTGTGGGGCACGTCCACGG
CGGCCTACCAGGTGGAGGGCGGGTGGAACACGGGCGGGAAGGGCGAGTCC
ATCTGGGACCACTGGGCGCACCAGCCCGGCAGAACTCCGCTGGGAGACAC
CGCGTGCGACAGCTACCACAAGTATGCAACCGATGTCCAACTTGGAGCCA
ACCTGGCCATGACGGCCTACCGGTTCTCCATATCCTGGCCCCGCCTTCTC
CCTGACGGCACCTTGGCAGGGGGCGTCAACCAGGCAGGCGTGGACTACTA
CAACAAGCTCATCGATGAACTGATAGCTCACAAGATGGTGCCTTTTGTCA
CGATGTACCATTGGGACCTACCGCAGGCTCTTCAGACTAAGTACGGTGGA
TGGACTAATGCGAGCATGGTGGACTATTTCAACGACTACGCCACGCTGTG
CTTCCAGAAGTTCGGCGACAGAGTCAAGAGATGGGCCACCTTTAACGAGC
CCTGGTCCTTCATCGTGCCGGGCTATGGGTTAGGTGTGTCCCCTCCCCAG
ATGCTCTTCGGCATGAAAAGACGCCAGTACGAAGTAGCACATGTTGTCAT
TAAGGTGCCCATGCTCGTGCCTGGCACACCTACAACGATTCCTTCCGGGC
CCAGCAGGGCGGGGATGCCTGAGTCCAGAGTTTTGGTGTTCGTGGGGCCC
TTGCTGATCACAGCTGCTGTTCTTCAACTTCTTATGGCTGCGAAGACTCA
CTCCAGGATAGGTGGTGTCCTTGGTCACACAGCCTTGCCTGAAGATATCT
CCATTAATGCCAGAGAGTACTCCCAGCATATTCAAGGCAGCCCCAAACCA
GTCCGTCAGAACTCATCCTACCCCAAAGAACCGTTCATATCCGGGACCGT
CCCGTCCGGCTTCCTGTGGGGCACGTCCACGGCGGCCTACCAGGTGGAGG
GCGGGTGGAACACGGGCGGGAAGGGCGAGTCCATCTGGGACCACTGGGCG
CACCAGCCCGGCAGAACTCCGCTGGGAGACACCGCGTGCGACAGCTACCA
CAAGTATGCAACCGATGTCCAACTTGGAGCCAACCTGGCCATGACGGCCT
ACCGGTTCTCCATATCCTGGCCCCGCCTTCTCCCTGACGGCACCTTGGCA
GGGGGCGTCAACCAGGCAGGCGTGGACTACTACAACAAGCTCATCGATGA
ACTGATAGCTCACAAGATGGTGCCTTTTGTCACGATGTACCATTGGGACC
TACCGCAGGCTCTTCAGACTAAGTACGGTGGATGGACTAATGCGAGCATG
GTGGACTATTTCAACGACTACGCCACGCTGTGCTTCCAGAAGTTCGGCGA
CAGAGTCAAGAGATGGGCCACCTTTAACGAGCCCTGGTCCTTCATCGTGC
CGGGCTATGGGTTAGGTGTGTCCCCTCCCCAGATGCTCTTCGGCATGAAA
AGACGCCAGTACGAAGTAGCACATGTTGTCATTAAGGTGCCCATGCTCGT
GCCTGGCACACCTACAACGATTCCTTCCGGGCCCAGCAGGGCGGGGATGC
CTGAGTCCAGAGTTTTGGTGTTCGTGGGGCCCTTGCTGATCACAGCTGCT
GTTCTTCAACTTCTTATGGCTGCGAAGACTCACTCCAGGATAGGTGGTGT
CCTTGGTCACACAGCCTTGCCTGAAGATATCTCCATTAATGCCAGAGAGT
ACTCCCAGCATATTCAAGGCAGCCCCAAACCAGTCCGTCAGAACTCATCC
TACCCCAAAGAACCGTTCATATCCGGGACCGTCCCGTCCGGCTTCCTGTG
GGGCACGTCCACGGCGGCCTACCAGGTGGAGGGCGGGTGGAACACGGGCG
GGAAGGGCGAGTCCATCTGGGACCACTGGGCGCACCAGCCCGGCAGAACT
CCGCTGGGAGACACCGCGTGCGACAGCTACCACAAGTATGCAACCGATGT
CCAACTTGGAGCCAACCTGGCCATGACGGCCTACCGGTTCTCCATATCCT
GGCCCCGCCTTCTCCCTGACGGCACCTTGGCAGGGGGCGTCAACCAGGCA
GGCGTGGACTACTACAACAAGCTCATCGATGAACTGATAGCTCACAAGAT
GGTGCCTTTTGTCACGATGTACCATTGGGACCTACCGCAGGCTCTTCAGA
CTAAGTACGGTGGATGGACTAATGCGAGCATGGTGGACTATTTCAACGAC
TACGCCACGCTGTGCTTCCAGAAGTTCGGCGACAGAGTCAAGAGATGGGC
CACCTTTAACGAGCCCTGGTCCTTCATCGTGCCGGGCTATGGGTTAGGTG
TGTCCCCTCCCCAGATGCTCTTCGGCATGAAAAGACGCCAGTACGAAGTA
GCACATGTTGTCATTAAGGTGCCCATGCTCGTGCCTGGCACACCTACAAC
GATTCCTTCCGGGCCCAGCAGGGCGGGGATGCCTGAGTCCAGAGTTTTGG
TGTTCGTGGGGCCCTTGCTGATCACAGCTGCTGTTCTTCAACTTCTTATG
GCTGCGAAGACTCACTCCAGGATAGGTGGTGTCCTTGGTCACACAGCCTT
GCCTGAAGATATCTCCATTAATGCCAGAGAGTACTCCCAGCATATTCAAG
GCAGCCCCAAACCAGTCCGTCAGAACTCATCCTACCCCAAAGAACCGTTC
ATATCCGGGACCGTCCCGTCCGGCTTCCTGTGGGGCACGTCCACGGCGGC
CTACCAGGTGGAGGGCGGGTGGAACACGGGCGGGAAGGGCGAGTCCATCT
GGGACCACTGGGCGCACCAGCCCGGCAGAACTCCGCTGGGAGACACCGCG
TGCGACAGCTACCACAAGTATGCAACCGATGTCCAACTTGGAGCCAACCT
GGCCATGACGGCCTACCGGTTCTCCATATCCTGGCCCCGCCTTCTCCCTG
ACGGCACCTTGGCAGGGGGCGTCAACCAGGCAGGCGTGGACTACTACAAC
AAGCTCATCGATGAACTGATAGCTCACAAGATGGTGCCTTTTGTCACGAT
GTACCATTGGGACCTACCGCAGGCTCTTCAGACTAAGTACGGTGGATGGA
CTAATGCGAGCATGGTGGACTATTTCAACGACTACGCCACGCTGTGCTTC
CAGAAGTTCGGCGACAGAGTCAAGAGATGGGCCACCTTTAACGAGCCCTG
GTCCTTCATCGTGCCGGGCTATGGGTTAGGTGTGTCCCCTCCCCAGATGC
TCTTCGGCATGAAAAGACGCCAGTACGAAGTAGCACATGTTGTCATTAAG
GTGCCCATGCTCGTGCCTGGCACACCTACAACGATTCCTTCCGGGCCCAG
CAGGGCGGGGATGCCTGAGTCCAGAGTTTTGGTGTTCGTGGGGCCCTTGC
TGATCACAGCTGCTGTTCTTCAACTTCTTATGGCTGCGAAGACTCACTCC
AGGATAGGTGGTGTCCTTGGTCACACAGCCTTGCCTGAAGATATCTCCAT
TAATGCCAGAGAGTACTCCCAGCATATTCAAGGCAGCCCCAAACCAGTCC
GTCAGAACTCATCCTACCCCAAAGAACCGTTCATATCCGGGACCGTCCCG
TCCGGCTTCCTGTGGGGCACGTCCACGGCGGCCTACCAGGTGGAGGGCGG
GTGGAACACGGGCGGGAAGGGCGAGTCCATCTGGGACCACTGGGCGCACC
AGCCCGGCAGAACTCCGCTGGGAGACACCGCGTGCGACAGCTACCACAAG
TATGCAACCGATGTCCAACTTGGAGCCAACCTGGCCATGACGGCCTACCG
GTTCTCCATATCCTGGCCCCGCCTTCTCCCTGACGGCACCTTGGCAGGGG
GCGTCAACCAGGCAGGCGTGGACTACTACAACAAGCTCATCGATGAACTG
ATAGCTCACAAGATGGTGCCTTTTGTCACGATGTACCATTGGGACCTACC
GCAGGCTCTTCAGACTAAGTACGGTGGATGGACTAATGCGAGCATGGTGG
ACTATTTCAACGACTACGCCACGCTGTGCTTCCAGAAGTTCGGCGACAGA
GTCAAGAGATGGGCCACCTTTAACGAGCCCTGGTCCTTCATCGTGCCGGG
CTATGGGTTAGGTGTGTCCCCTCCCCAGATGCTCTTCGGCATGAAAAGAC
GCCAGTACGAAGTAGCACATGTTGTCATTAAGGTGCCCATGCTCGTGCCT
GGCACACCTACAACGATTCCTTCCGGGCCCAGCAGGGCGGGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000326 | genome | Sc0000326:114269..118898 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL64007_cuf1 |
| Biotype | protein_coding |
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