transcript:BL64319_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL64319_cuf0
Unique Nametranscript:BL64319_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL64319_cuf0

>transcript:BL64319_cuf0-protein ID=transcript:BL64319_cuf0-protein|Name=transcript:BL64319_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=100bp
MIFQCFVKGSLQLKSVQRCITHRVHCPVCAQAKFQQTSGEPALTSPCEGA
RVSGAKCCXYICHVCAGLLRTCMLKVELARPSQLTKMTMETFFHYCKTFS
Run BLAST on NCBI

mRNA from alignment at xpSc0040427:2456..3213+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL64319_cuf0 ID=transcript:BL64319_cuf0|Name=transcript:BL64319_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=758bp|location=Sequence derived from alignment at xpSc0040427:2456..3213+ (Branchiostoma lanceolatum)
GAGTACTAGTATGCAGTTACCCCAACTTACTGGGGGTACTCAATGAATAC
CAGGTTGCCACATTTTAAACAGAGTATATAGTATAAGTCTAGCTGGAACC
AGAGTTCCTACCTGGCAGACTCGACTCGACTCGACTCTACTCTACTCTAG
TGTTAACTAACTTGAGGGAGCTGTGAAGATACATTCTGAATCTCAGATGA
TTACTTTATAATTATGATATTTGTTTCCCGATGTATTTTTTTTTTCAAGC
TCTAAGTCCCAATGGATCATTTCACACTCACAACGACTGTTGTTTACCAT
TTCCAAGCTTTCTAGCTTGATTTGCAAATGTACAACAGTACGTGTACATG
CCTATTTGTGTTACTGTATTGGCCTCATCATTAATAGTGACTTGCTGTTC
ATTCATCTTGATATTCTAGATTGATTGTTTTGCAAAATTGTTTTGCAAGT
TTTATCCAATGATTTTTCAATGCTTTGTAAAGGGTTCTTTACAACTCAAA
AGCGTTCAGAGGTGCATCACACACAGGGTACACTGTCCAGTGTGTGCCCA
GGCTAAATTCCAACAAACCTCAGGGGAACCTGCACTTACCAGTCCGTGTG
AGGGGGCAAGGGTATCGGGGGCCAAGTGTTGCANTTACATCTGCCATGTC
TGTGCTGGCCTGCTCAGGACCTGTATGTTGAAGGTGGAGCTTGCGAGGCC
AAGCCAATTAACAAAAATGACCATGGAGACATTTTTCCACTATTGTAAGA
CATTTAGT

Coding sequence (CDS) from alignment at xpSc0040427:2456..3213+

>transcript:BL64319_cuf0 ID=transcript:BL64319_cuf0|Name=transcript:BL64319_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=300bp|location=Sequence derived from alignment at xpSc0040427:2456..3213+ (Branchiostoma lanceolatum)
ATGATTTTTCAATGCTTTGTAAAGGGTTCTTTACAACTCAAAAGCGTTCA
GAGGTGCATCACACACAGGGTACACTGTCCAGTGTGTGCCCAGGCTAAAT
TCCAACAAACCTCAGGGGAACCTGCACTTACCAGTCCGTGTGAGGGGGCA
AGGGTATCGGGGGCCAAGTGTTGCANTTACATCTGCCATGTCTGTGCTGG
CCTGCTCAGGACCTGTATGTTGAAGGTGGAGCTTGCGAGGCCAAGCCAAT
TAACAAAAATGACCATGGAGACATTTTTCCACTATTGTAAGACATTTAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL64319gene:BL64319Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL64319_cuf0-E1BL64319_cuf0-E1-1564476830-560759Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL64319_cuf0transcript:BL64319_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0040427genomexpSc0040427:2456..3213 +
Properties
Property NameValue
Transcript idBL64319_cuf0
Biotypeprotein_coding