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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL64741_cuf0 >transcript:BL64741_cuf0-protein ID=transcript:BL64741_cuf0-protein|Name=transcript:BL64741_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=817bp
SLVDFSTDPQWLDIFYCNSVDGACNMLIDLITQTKIKCVPHRNITIRPRD
KPWMTSRIRRLMGIRDKTHKKAKLSNTPSLWASYRKIRNRLVNEIASAKL
NYDTRLQNSLLNSTTGSKTWWHIVKTIYGCKMSTTIPPLKRNDHYICDSS
EKASEFNSYFSLQSTIDDTNSTLPNLDYLTNVRLFNCETTAPEVELYISE
LDTSKAYGWDNIDNRFLKIISPYISDKIAYVFNLSLCHGIFPEVWKRANV
VPIFKKGDPCIVSNYRPVSLLPTLSKILEKIVYKHLYNHLMSQNLLYSYQ
SGFIRGDSTVNQLVFITNKILQAFDQNKEVRAVYLDFSKAFDKVWHKGIL
FKLQRNGVEGPFLNWFQSYLNGRKQRVVIEGQNSDWCEISAGVPQGSVLG
PLLFLVYINDMIQELETHPFLFADDSSLLDVVESPTVSAIRLNSDLSKIL
SWTKAWLMELNPSKTIETCYSTKAIPPPHPPLFLGTEQIDSVDCHKHIGV
HLSSTMSWNTHISNMLANASKKVSTFSKLKFKLPREVLETIYKSFIRPLL
EYGGVVWHGCTASDSQLIERIQYECALTVAGAIRGSSYTSLLAELGWEKL
SDRRHVQSLILFYKIIHGQTRQYLRDLIPPTVSDSSSYDLRNKYNLQLLK
CTTTRFKKSFIPYATYHWNNLTLADRSLSLPHFKKTMIKSVRPVSVPYFN
TGPRYTCALLTRFRLGTFSLNFNLYTRNLVTSPACTCGHPCESISHYFLY
CPNYTQHRSLLFSNLENLVGSVINLNNLSDDVLIQLLLKGLPFLSNSNNV
KLLQHVQLFIIQSKRFE Run BLAST on NCBI mRNA from alignment at Sc0000194:473545..476271+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL64741_cuf0 ID=transcript:BL64741_cuf0|Name=transcript:BL64741_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2727bp|location=Sequence derived from alignment at Sc0000194:473545..476271+ (Branchiostoma lanceolatum)
CCTCACTTGTAGACTTCTCGACTGATCCGCAATGGCTAGATATATTTTAT
TGTAATTCTGTTGATGGTGCTTGCAATATGCTAATTGATCTTATTACTCA
GACAAAAATAAAATGCGTCCCCCACAGAAATATCACCATCAGACCCCGTG
ATAAACCATGGATGACATCCAGAATAAGACGACTTATGGGTATTCGTGAC
AAAACACATAAAAAAGCTAAATTATCTAATACCCCTTCACTCTGGGCTTC
TTATCGCAAGATAAGGAACAGACTTGTGAATGAAATAGCTTCAGCCAAAT
TGAACTATGATACTCGCCTACAAAATTCTCTACTTAACTCTACTACAGGT
AGTAAAACATGGTGGCATATAGTCAAAACCATTTATGGATGCAAAATGTC
AACTACAATTCCTCCACTTAAGCGCAATGACCATTATATATGTGACTCAA
GCGAAAAGGCTTCAGAATTCAACAGTTACTTTTCCCTCCAATCGACAATT
GATGATACTAATTCCACATTACCTAATCTTGACTATCTGACCAATGTACG
TTTGTTTAATTGTGAAACCACTGCCCCTGAAGTTGAACTATATATTTCCG
AGCTGGACACTTCTAAAGCATACGGGTGGGATAACATTGACAACCGTTTT
CTTAAAATCATTAGTCCTTACATTTCAGATAAAATTGCCTATGTTTTTAA
TCTTTCGCTCTGTCATGGAATATTCCCAGAAGTCTGGAAGAGAGCAAATG
TTGTACCCATCTTTAAAAAAGGCGATCCTTGTATAGTTTCTAACTACCGT
CCCGTCTCGTTGTTGCCTACCCTATCTAAAATTCTTGAAAAAATTGTCTA
TAAACATTTATACAACCATTTAATGTCTCAAAATCTGTTATATTCTTATC
AATCTGGTTTCATTAGGGGAGATTCAACTGTAAACCAGCTTGTCTTCATT
ACAAACAAAATTCTCCAAGCCTTTGACCAGAACAAGGAAGTCAGAGCCGT
TTATCTTGATTTTTCAAAAGCGTTTGATAAGGTTTGGCATAAAGGCATAC
TCTTCAAGCTTCAACGAAACGGGGTGGAAGGGCCTTTTCTCAACTGGTTT
CAAAGTTACCTCAATGGTAGAAAGCAGCGTGTCGTAATCGAAGGTCAAAA
CTCTGATTGGTGCGAGATAAGTGCAGGTGTACCTCAAGGATCAGTGCTTG
GTCCGCTATTATTTCTCGTGTACATTAATGACATGATACAGGAACTCGAA
ACTCATCCTTTTCTGTTCGCAGACGATAGCTCCTTGCTCGATGTTGTAGA
ATCCCCCACTGTATCAGCCATTAGACTCAATTCTGACCTTTCTAAGATAT
TATCATGGACAAAAGCGTGGCTAATGGAACTCAATCCGTCAAAAACAATC
GAAACGTGTTATTCTACAAAGGCTATACCTCCTCCACATCCACCCCTTTT
CCTTGGTACCGAACAAATCGATTCTGTAGACTGTCACAAACATATCGGGG
TTCATCTGTCATCTACTATGTCTTGGAATACACATATTTCTAACATGTTA
GCCAATGCATCTAAAAAGGTTTCAACCTTCAGTAAACTTAAATTCAAGCT
CCCCCGTGAAGTCTTGGAAACAATATATAAATCTTTTATCCGTCCCCTAC
TCGAGTATGGTGGCGTAGTATGGCACGGTTGCACTGCTTCAGACTCTCAA
CTCATCGAACGAATACAATATGAATGTGCTTTAACCGTAGCTGGTGCCAT
TAGGGGGTCCTCGTATACTTCACTACTCGCCGAACTGGGATGGGAAAAGT
TATCTGACCGCCGCCATGTTCAGTCCCTTATCCTATTCTATAAAATTATC
CATGGACAAACTCGACAATACTTAAGAGATTTGATACCACCCACAGTATC
AGATTCCTCTTCCTACGACCTTCGCAATAAGTATAACCTTCAGTTGTTAA
AGTGTACCACAACTCGCTTTAAGAAATCATTCATACCTTATGCTACGTAT
CATTGGAACAACCTTACCTTGGCAGATCGATCATTAAGTCTTCCTCATTT
TAAGAAAACAATGATCAAATCTGTGCGCCCTGTATCTGTCCCATATTTCA
ACACTGGTCCTCGTTACACCTGCGCTCTTCTCACTCGTTTCCGTCTTGGT
ACTTTCAGTTTAAACTTCAATTTGTACACTCGCAACCTAGTTACCAGTCC
TGCTTGTACCTGTGGCCATCCTTGTGAAAGTATTTCTCATTACTTCTTGT
ACTGCCCTAACTACACACAACACCGTTCCTTACTCTTCAGTAATTTAGAA
AATCTGGTAGGTTCAGTCATAAATCTCAATAATCTCTCGGATGATGTTCT
AATTCAATTACTGCTTAAAGGCTTACCCTTCCTTTCGAATTCAAACAATG
TCAAACTCTTACAGCATGTCCAACTTTTCATTATACAATCCAAAAGATTT
GAGTAGTAAACCACCATCCTACCAGTCTTGTAGTACCTGTCCACATATTT
ATCTGTTTATTGATTTCAATTTTTCTTACATTTAATGATTTCTGTTATGT
AGTTTATTTGAGATAATTTGTTGCTCTTATGCTTTGCATGTCCGCACCTG
TTTTTTTGTCATTTTCAGTATTTGTAAAATTTGTTTTGTTATTCTGTAAT
GTATTCTGTCGATGACGACATGAAAATAAGCTGTAAGCTTGAGTCTGTCG
TCATCATGTCTTGTATGTAAATGTTGC Coding sequence (CDS) from alignment at Sc0000194:473545..476271+ >transcript:BL64741_cuf0 ID=transcript:BL64741_cuf0|Name=transcript:BL64741_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2454bp|location=Sequence derived from alignment at Sc0000194:473545..476271+ (Branchiostoma lanceolatum)
TCACTTGTAGACTTCTCGACTGATCCGCAATGGCTAGATATATTTTATTG
TAATTCTGTTGATGGTGCTTGCAATATGCTAATTGATCTTATTACTCAGA
CAAAAATAAAATGCGTCCCCCACAGAAATATCACCATCAGACCCCGTGAT
AAACCATGGATGACATCCAGAATAAGACGACTTATGGGTATTCGTGACAA
AACACATAAAAAAGCTAAATTATCTAATACCCCTTCACTCTGGGCTTCTT
ATCGCAAGATAAGGAACAGACTTGTGAATGAAATAGCTTCAGCCAAATTG
AACTATGATACTCGCCTACAAAATTCTCTACTTAACTCTACTACAGGTAG
TAAAACATGGTGGCATATAGTCAAAACCATTTATGGATGCAAAATGTCAA
CTACAATTCCTCCACTTAAGCGCAATGACCATTATATATGTGACTCAAGC
GAAAAGGCTTCAGAATTCAACAGTTACTTTTCCCTCCAATCGACAATTGA
TGATACTAATTCCACATTACCTAATCTTGACTATCTGACCAATGTACGTT
TGTTTAATTGTGAAACCACTGCCCCTGAAGTTGAACTATATATTTCCGAG
CTGGACACTTCTAAAGCATACGGGTGGGATAACATTGACAACCGTTTTCT
TAAAATCATTAGTCCTTACATTTCAGATAAAATTGCCTATGTTTTTAATC
TTTCGCTCTGTCATGGAATATTCCCAGAAGTCTGGAAGAGAGCAAATGTT
GTACCCATCTTTAAAAAAGGCGATCCTTGTATAGTTTCTAACTACCGTCC
CGTCTCGTTGTTGCCTACCCTATCTAAAATTCTTGAAAAAATTGTCTATA
AACATTTATACAACCATTTAATGTCTCAAAATCTGTTATATTCTTATCAA
TCTGGTTTCATTAGGGGAGATTCAACTGTAAACCAGCTTGTCTTCATTAC
AAACAAAATTCTCCAAGCCTTTGACCAGAACAAGGAAGTCAGAGCCGTTT
ATCTTGATTTTTCAAAAGCGTTTGATAAGGTTTGGCATAAAGGCATACTC
TTCAAGCTTCAACGAAACGGGGTGGAAGGGCCTTTTCTCAACTGGTTTCA
AAGTTACCTCAATGGTAGAAAGCAGCGTGTCGTAATCGAAGGTCAAAACT
CTGATTGGTGCGAGATAAGTGCAGGTGTACCTCAAGGATCAGTGCTTGGT
CCGCTATTATTTCTCGTGTACATTAATGACATGATACAGGAACTCGAAAC
TCATCCTTTTCTGTTCGCAGACGATAGCTCCTTGCTCGATGTTGTAGAAT
CCCCCACTGTATCAGCCATTAGACTCAATTCTGACCTTTCTAAGATATTA
TCATGGACAAAAGCGTGGCTAATGGAACTCAATCCGTCAAAAACAATCGA
AACGTGTTATTCTACAAAGGCTATACCTCCTCCACATCCACCCCTTTTCC
TTGGTACCGAACAAATCGATTCTGTAGACTGTCACAAACATATCGGGGTT
CATCTGTCATCTACTATGTCTTGGAATACACATATTTCTAACATGTTAGC
CAATGCATCTAAAAAGGTTTCAACCTTCAGTAAACTTAAATTCAAGCTCC
CCCGTGAAGTCTTGGAAACAATATATAAATCTTTTATCCGTCCCCTACTC
GAGTATGGTGGCGTAGTATGGCACGGTTGCACTGCTTCAGACTCTCAACT
CATCGAACGAATACAATATGAATGTGCTTTAACCGTAGCTGGTGCCATTA
GGGGGTCCTCGTATACTTCACTACTCGCCGAACTGGGATGGGAAAAGTTA
TCTGACCGCCGCCATGTTCAGTCCCTTATCCTATTCTATAAAATTATCCA
TGGACAAACTCGACAATACTTAAGAGATTTGATACCACCCACAGTATCAG
ATTCCTCTTCCTACGACCTTCGCAATAAGTATAACCTTCAGTTGTTAAAG
TGTACCACAACTCGCTTTAAGAAATCATTCATACCTTATGCTACGTATCA
TTGGAACAACCTTACCTTGGCAGATCGATCATTAAGTCTTCCTCATTTTA
AGAAAACAATGATCAAATCTGTGCGCCCTGTATCTGTCCCATATTTCAAC
ACTGGTCCTCGTTACACCTGCGCTCTTCTCACTCGTTTCCGTCTTGGTAC
TTTCAGTTTAAACTTCAATTTGTACACTCGCAACCTAGTTACCAGTCCTG
CTTGTACCTGTGGCCATCCTTGTGAAAGTATTTCTCATTACTTCTTGTAC
TGCCCTAACTACACACAACACCGTTCCTTACTCTTCAGTAATTTAGAAAA
TCTGGTAGGTTCAGTCATAAATCTCAATAATCTCTCGGATGATGTTCTAA
TTCAATTACTGCTTAAAGGCTTACCCTTCCTTTCGAATTCAAACAATGTC
AAACTCTTACAGCATGTCCAACTTTTCATTATACAATCCAAAAGATTTGA
GTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000194 | genome | Sc0000194:473545..476271 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL64741_cuf0 |
| Biotype | protein_coding |
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