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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL65530_cuf1 >transcript:BL65530_cuf1-protein ID=transcript:BL65530_cuf1-protein|Name=transcript:BL65530_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=102bp
YCLSDSAPIVDDPPEPFPGGILSSRLRSTDNMKIALGFLLLATLFIWIPV
SISQDVAVALKTSLLSGSNYDKSLRPVKSASTAVNVDFDISLKQIIDLAE
KE Run BLAST on NCBI mRNA from alignment at Sc0000012:2617399..2625199+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL65530_cuf1 ID=transcript:BL65530_cuf1|Name=transcript:BL65530_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=7801bp|location=Sequence derived from alignment at Sc0000012:2617399..2625199+ (Branchiostoma lanceolatum)
ATTATTGTTTGTCTGATTCTGCTCCAATAGTTGATGGTAATGATGCGGCA
GGAATGTTTTTGATAGTAACCCAGTAGCACTGCCTATCATTCAGCCATAA
CGTATCTAGTTTCTAGTTATTCTACTGTTTACAAACAAACCAATGAGCTA
ATAATAACCAACCAACCGAGCAAGCAACTAACCAACCAACCAACCAAGTA
ACCAACACTGATGATGACGTAATCTCCATGGCGGAGGTGATGAAGACCGA
GATTATCCGGTGTTTTCAAGTTTATGTGACGTATTTGTGCTGCGTCATGA
TTTAGTACACGTTATGTCAGAGTTCCCCTGTATACCTTTGTTTACGATCA
CGTTTCGACTCACGTGTTTACAAAACAGTGTCCATTCACTTGTGGTGCAT
GCAGAGTAACCCAAAACCTTTTCAAAGTTTAAGATTTTGCCGTTCGTCAA
AACATCGTGGCCTGTTATGTATTTCTTTAACCTTCTCTTTATCGGTTTAG
CCAACCTTTTCCATTTGTATTAAACCGTAGTTCGTTGATCAAAGTTAGTG
AAATAAAGTAACGAGCAGGAGGCGTGTTTCACACTTCGTGTCATAAATGC
CATTTTCTGAAGAAGTGAGCATGACTTCATGTCGATCCGACGTGGACATT
TCTCGATTTCCACCCCCACCATCTCCTTGAAGATCAACTATCCAATGAGT
CACCGAGGGGTCATTGACGCGATGGGGTCATTAATTATAACTTTCACCCA
AGGTAGAAAGTGTTGAAATTATTTCGCGACGCATTTTGGTTCTTGTTGTC
TTGGTGCATCTCGTAAATAGATACATATATAATGTGGCTGGCAGTTTCGC
ACAAAATACGTAGATGGCTAAAGACGTTTGCCTTGTAACTGTAAAAAGAA
CGAAGTTTGAAGCAACCTGTAGCTTGAGTTTTTGCATTATGTCTCCACTT
TGTAATTTACTGTTGTGTATCGGCTTTAGACATGGAATAACTAACTAGTA
AGTCGTCACAAGATCAGGGAGATACAATGATCTTATTACACGTGTAGGCT
ACGTACAGATCAGTTGCAAAACCACTGTCAATGGAACATGTAACTGCAAG
GGATTTACGGAGTTTCAGTCGAGAAGTACAGACCAGCCATTGTTTGAACC
CTCAGTGTGCACCTCAGTGCTCACCCGGACAGGTACATTATCAAACCTCA
TGACGAATGTGACCAAGAAATCTCACCCTTAGCTGCAGCACCTATAGAAA
CCACTGACGGGTCAGCGCACACGAAAACGTACACCTGTCTTTTCTCTGAC
CCATTCAGAGATTCGATGTACGCCGATCTAACCTTTCCACGTATTGCTAT
GGTCACCATCTTAGCTTACATCAAATGTCACACTCCTGAATAGCGTCACT
GTCATCAGACCCTCCAGAACCCTTTCCTGGCGGCATTCTCTCCTCACGTC
TCCGCAGTACGGACAACATGAAGATCGCTCTGGGATTTTTACTCTTAGCA
ACACTGTTCATATGGATACCAGGTATGTGTTTATCAGTCAAGTAAGAACT
CAGCTACAGTTAAGCTGTGGCTGTTCGAGATGGGAAGTAGCACCAGTGTA
ATAGGTTGGGTTCGTCTTCCAATGGGGAGACTAGCATGCTAATGCTACCG
TCACATGTCCAACCCGGGGCCCGGCCGGGCAGTTTGTGGGAAGGAAAATT
ATGATATAAAAGACAACAAAAGACACAAAACATGAAAAGACTATCCATGG
GCATAATCTGTATATATCTGTTGATATACACTTTTAGTTTTCGTTCCTGC
AAGCAGCCCGGCCGGGTCCCGATATAGAAATGTGACCGTAGCATATGTGA
GGTCTTTACAATATGTTATTTCTCCAGTACCTGTAAGATCTAAAGTCTAG
TAAAACTTTGGTAACACGTTCTTGGCTGGCAGTAAACATTTATTAGAGTG
CCTTCACTTTGTATCAATACAGTTTCTACCAGCTTGTCCGGTGCCAGCGG
TACGTCCTCGTAATAAATATATTGTTAGGTTTGTAGGGCACCAAAGTAAA
CACACGTCGCCATGGTACGAATCTTTCAGCGTTACATGCAGGTTGTGTTC
TGTCGTGCTTCTGCCAGTTCCATGCAAAGTGCAGCAGTAGCAAGAACGAC
TTATGTTTCTTATCTTGTGTTATTTCATCCACTTGAAAGCTGTCAATCCT
GAGATTGATAGATTTATAGAAAGTGTCAGAAACGTCGGGCGTCCTCAGGC
ACAATATTTAGGGCTAAAGTTGTCCTTTCTAAAGGATCAGTTGTCGTGAT
AGGGTTCCATCCGGCATCCTTTTCACATTTTGCATCATGTTCCAATTATG
GAATCAAGGGTCCACTAAACCAATGTTCGGTCGCTGTACCGACGCTCAGC
GATCGGCGTCTAGTGGAAATGTGGCCTTATCATCTAACAAATCTACTTCA
TCCCTGCTCGATATAAGCTGACTTATATAACCCACTGCGACCTCCTGCCG
CCATCGACACATAATCGGAATGAACAGAAGAGGTGCCTCTCTTATACCAA
GCCCGTTTTAATGTCCTGTAAACAATGCCAGGATGTCCTCATATGTTCCA
CGAAGCAGCTTTTCTTATGTACAGGAGATTATCTCCTGTGCCTTATATTA
CATCCTCCCAACAAACGCATAATGGGTTTAATAAGGATCAGTTTCGACAC
GGAACACTGTTTAATTTTCTTGCTTTATTTGGAAGAAAATGGAGAGCTTA
ATTCATCTGCCATCTTTGTGGAGGCTTCAGCATCATATGCAAAATGAGGA
GTTAGGTTACCTTTAGTTAGCAGCCCTGTGAAAGGGTTCTTGTGTTCACC
TTGGCAACATGGGTCAAACAGGCTTCTCCATCATTAGAAAGAATAGAGAC
GAAGACCCCATAGCCATAATCTTAAGTACCAGTTGTATAGAAATCCCTCT
ACAAAAACAGCATGCTGTATTTCAGTGTCCATCAGCCAAGATGTAGCCGT
GGCCTTGAAGACGTCCCTCTTGTCCGGATCCAACTATGACAAAAGTTTGC
GGCCGGTCAAGTCAGCGTCTACAGCTGTGAACGTGGATTTCGACATCTCC
CTGAAACAGATTATCGACCTGGTGAGTAAAATCTATCCCTCGACTTGGAA
TTTCATCGACAGATATACTAGTAGGCTGCTCGTCGTAACTTCGTAAGATG
ATCGCTTGGCCGTACGTCTGTTGTAGTTTATGTTTGGCACATGTCACGTG
AAAGATGGGCCGGATGAACTTTTAAAGGGTCTTTTGGATATCACATGTTC
ATGACCTTGTAAGAAAAATATGTCAATCTGACGGAACTTCATCGATAGAT
ATGTGCTGCTCCTCATTCCCAGATCACGTGTTTGTATAAATGTTGTACAC
TGTCTTTATAGTTTACGTTTCGCCCACGTTAAAACAAGATGGAGCAGTTT
TTGAAGGGTCTTTTAGACATTACATTTTTACGGCCGGGATTGATGATTTC
TCTTTTTGTCAGGCGGAAAAGGAGCAGACATTCCGAATCAACATCTGGCT
GCGTCTGGTGAGTATCACGAGCATCTGCTACTTATTGAAAGAAAAAAAGC
CAATAAAATATTTTCTTGCCAATTTTGGTTATCGCACTAGTAATACATAC
AATACATACAATCTTCGATATACCGGGAACTGATGACCCGTGTCCTTCAT
GTACAGTACTGGAATGACGAGTTTCTGACGTGGAACGCCTCAGAACACGG
TGGTGTGGAGTCCTTAACCATTCATTCTTCCGACGTTTGGAGGCCTGACA
TCTTCCTCTACAACAAGTGAGTAGATTATTCATCCTGGTATATGACATCT
GAAACTTCTGTATTTTGTGGGGGAAACTATGCACTGTAAACGTTGGAGTT
GAGTTTGTTGGGGGTAAAATGGTACCCGTACTCGTTTCCTCACGTAATTT
GAGTTTTGAATTGAGTCGCCAGATAATTCCAATAAGGGTTTCGTTTTTCT
TTTCCTTCCACTGTGTGATCCATTTCGTCGATGACAACAGCATAGCCGAG
ACGTACGGTGCCATAGAGGCCGTCACTGACGTCACCGTGACCAGTGCCGG
ACGGGTGTCATATCTCCAGCCCGCCATTTTTACCAGCGCATGCCTAGTGG
ATATTACAAAGTTCCCTTTTGACCATCAGGTACCTACCTTTAGGACATTT
ATGAACACTGTTGAGTAGTTCTAAGGATGGTATAGACTTTTTCAACTTTA
ATCCTTTAATGCTGTGAAAGATGTGTGCGTTATTTTCAATGAAGCTGAAC
TGTGGCGCCTAATCTAAACTGCTTTGATGAAGCGACGGAGCCCACTCCGT
ACGTAGTTTGTCATTTGCTTCTTCTAACTCAATCAACAACGATGCCTCTA
CATTTTATGATGTCAATCTTACAGGAATGTCTCCTGGAGTTTGGGTCCTG
GATCTACGATGGCGGCAAGGTGAACGTGTCCCTGGTGAACCCCACGGCAG
ACCGCGGCATCTTCACCCAGAACGAGGAATGGATCCTGAATGGCACACCT
ATGAGCAGACTGGTAAGAGCAGAAAACAACAGTGTGCTGTTGTGTTGTAT
TGTGTTGTGTTGTGTTGTATTGTATTGTGTTGTTATGAAGGTTTCAACTG
TCATGTTATGTTGCGTTGAACTGTTTATCCACTCTTAGACTTCCAATTTA
AGATTGTGACCTTCCATACATTCAACAGGTCACCCTCTATCCCTGCTGCC
CCGACCCCTACGTCACCATCGTCCTCACCCTACAACTCGAGCGCCGGTCC
TACTTTTACATGTTCAACATGGTTCTGCCGTGCATCGTCTTGATGATTCT
GAATCTGTTCGGGTTCTACATCCCCCCGGACAGCGGGGAGCGACTGGGCT
TCTTCATCACCATCCTGTTGGCTCTCGTCGTCTTCCTGCAGGTTTTGTCA
GATTCTCTGCCCAAAACGTCAACAACTACTCCACAACTGGGTAAGCAGCA
GTGCCTATCGTCAAGGCATCAATGTTATCCCTTTGTGCGCACCAAATCTA
CCTGTCTTGACATGAGATACGCTAGAAACTTTTTCTTCATCCATCTCTTA
ATTCGTTGATGAAATGATGTGTCAAGACAGGAGGCAATGTGCCGTGGAAT
TGACTGTTCATAAATTTCATGCATATTCTCACATCGTTGAATGAAGCTAT
CGATCTATTTCCTCCCTTTCCAGGCCAGTTCTTCGCTGCCACCATCTGGC
TTGTGGGCATCTCGTGTCTGGCCTCAATCGTGGTGATCCGCATGTCCTAC
AACAGCCCGCCCTCCCGACCGCTGCCCCGCTGGCTCCGTTTGCTTCTGCT
GCGCTACCTGGCTCGCCTCTTCTGTATGAACACCATCGCGGAGGAGAAAC
ACGTGGTTCATCCCGCCAAAGAGGGCGTCGACAATCTCGTCTTCATGGAT
CACGACGGCGACACCATCCAGCAGAAGGACACGCCAAATTTCGCGCTCGA
CCTGTCTCTGCGCGAGATTGTGCGCTACTGCCGGGAGTACTCGGCACAAG
CCCGGGAGAAGAAAGAAGAAGAGGATGACCAGGACGAGTGGAAGATGGCG
GCCCTTGTGCTGGACAGGGCCTTTTTGTTCCTCGTTGGCCTGGCAAATAT
CATTGTCTGTGTCGTGCTACTCCGTTAGGCTATCTGATTCTATCGTGGAC
ATCAAGAGACAAGGAACTAAACTGTACCATATGTTCATTGACAAAAACAA
ACAAATTAGCCTCAGTTTACAAAATGGATATATGTCATATAGCCCAGTAT
TTGACATTGACAGGCAGGACATTGACAAATGATCGCGTTGATACATTACT
TTTGACCATAGCTTACAAAGAATGTGAAAAATTTCAATCGATTTTATGAC
ACACGCTTGAATGGTCATCAAAATGAACTGCCCTTTCAAAGTTTACACTG
TGGAATGTTTCATTCACTTTTCTAGGATAAATTAACGTTTCTGTGTGGAA
AGATACATTGTTTACTTATGCTATTGCAGAAAATGAACTCATAGAACCTT
AGTTTGCCACTGATTAGCTATGATTGTGATTTGAACGCGCACAAGTTGAG
GCAAGATCAATGAAACTAGATGCTTCTAATTTGCATGCTGGTAACGTTAA
CTGATATCAACTTTGGTGAAAAATATTGAACATTGTCTTCGGAGCAAGTT
TCTAGACCTGGTATCCGTTAAAAACTAAATGCAGTGTTTGTTGAGTTGAT
TTGATATAATTTTGTGATTGCTGCTACCGGGTACCATCTGTGTTTGAAGT
TTGAAGAAAGTACATGAGTCTGATTGTGATCTTTTGGTAATAGCATCCTC
AACAAAAAGTTTTTTAGGAACAGAAATGAATAGACGCTGTATATAGTTGC
GATAGTATTTCACGTGAAACAATTAAAGGAAACAAGCAAACAGGCTGTTT
GACATGATTTGTGGTTGGGGTGAAAACGTGTGATGTTGTGGTATAACAGG
TACAGACCAGCTCTGGTGTCAGCCCTCCGGTCGGCACAACACAACACACC
CGGAGAGGTACATTCTCGAGGTACATGACGAATATTACGGAGAAATCCAA
TCCCTTCTGAACAATTATAGCGACGCCAAAATATACACTAGGAGGGTCTT
TGGGCGTGAAAGGGTGCACTTGTCTTTCCAGCTTGCCCATTCAGTGATTC
AATATGAGCCATTTTAACGTTGCAATGTAGCGGCATCATATTCACATACC
TGAATAGCTTCACTGTCATCCGACTCTTTAGTCTACAGTGGTTTGTAGGT
ACTGGCCTTGCCTCCAGCTAAAGTCGAGTACGAGCAGCATGGAGATCTCT
CTCGGCTTTTTAATCCTTACGATACTCTTTACATGGATACCAGGTATGTA
CATATCAGATCAGACCCCAAATGATACAATTATAGTCCAAATTCGCTCTG
TAATGAACCATGGGAGTTACAGGTCCGTTGTTGTGGTGTTGCCAATGTGT
TGAAGCTCCTGGTACGTTGCCATGCCGTCTGACTCCTTTGGGATCCATTT
GTGTGCAAACCACTGCTTACCTTTTTATAAATCTGCACTTTGGTACCAAC
AGGAAACCCAAAGTGCGTTATTTTGTCTTCAACAAAATCGTGGTCAGCAA
CGTTAAGTGTCCACCTACATTTACCTTTCCGATGAGGGAGAGATTTTATT
CCGACCATTTGTTTATGCCGTGACTCGCTCTACTTTACCTTGTGGCTTCT
GTTACATTCACAACAAATGTGCACACGTTTTCTTGGCCACTAAAAAGGCA
ATTTAGATAGCAAAATGCCCTAGTCTAGAAATCTCTGTCCTTCATAACAA
CATCATGATAGAAGACTATATTTTCAGGGTCCATAAGCCAGGATGAGGCC
ATAGCCTTGAAGTCGTCCCTCTTGTCCAACTATGACAAAAGTTTGCGGCC
GGTCAAGTCAGCGTCTACAGCTGTGAACGTGGACTTCGACATCTCCCTGA
AACAAATTATTGAATTGGTAAGAAAAAATGGTCCACTTAGCTTCTATGAA
ATTTGATCCATTACTCTACGTTGCACCGTCATACATACATGTATGTGTGT
AAATGATAGACGATATATCCATGTTGTACTTAACAATTTACAGAGTGGAG
AGACCAAGATTCCATACCATTTCAACACCCCTGTATTCACCATGATTATT
TTTGTACAGCCAGATCTATTTGAACAGCCTGTCTTTTCATCTTTTTGTTA
TTCCGTTTTCATCTGGTTGATAACTTCATTTGTTTCAGGCGGAAAAGGAG
C Coding sequence (CDS) from alignment at Sc0000012:2617399..2625199+ >transcript:BL65530_cuf1 ID=transcript:BL65530_cuf1|Name=transcript:BL65530_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1224bp|location=Sequence derived from alignment at Sc0000012:2617399..2625199+ (Branchiostoma lanceolatum)
TATTGTTTGTCTGATTCTGCTCCAATAGTTGATGACCCTCCAGAACCCTT
TCCTGGCGGCATTCTCTCCTCACGTCTCCGCAGTACGGACAACATGAAGA
TCGCTCTGGGATTTTTACTCTTAGCAACACTGTTCATATGGATACCAGTG
TCCATCAGCCAAGATGTAGCCGTGGCCTTGAAGACGTCCCTCTTGTCCGG
ATCCAACTATGACAAAAGTTTGCGGCCGGTCAAGTCAGCGTCTACAGCTG
TGAACGTGGATTTCGACATCTCCCTGAAACAGATTATCGACCTGGCGGAA
AAGGAGTATTGTTTGTCTGATTCTGCTCCAATAGTTGATGACCCTCCAGA
ACCCTTTCCTGGCGGCATTCTCTCCTCACGTCTCCGCAGTACGGACAACA
TGAAGATCGCTCTGGGATTTTTACTCTTAGCAACACTGTTCATATGGATA
CCAGTGTCCATCAGCCAAGATGTAGCCGTGGCCTTGAAGACGTCCCTCTT
GTCCGGATCCAACTATGACAAAAGTTTGCGGCCGGTCAAGTCAGCGTCTA
CAGCTGTGAACGTGGATTTCGACATCTCCCTGAAACAGATTATCGACCTG
GCGGAAAAGGAGTATTGTTTGTCTGATTCTGCTCCAATAGTTGATGACCC
TCCAGAACCCTTTCCTGGCGGCATTCTCTCCTCACGTCTCCGCAGTACGG
ACAACATGAAGATCGCTCTGGGATTTTTACTCTTAGCAACACTGTTCATA
TGGATACCAGTGTCCATCAGCCAAGATGTAGCCGTGGCCTTGAAGACGTC
CCTCTTGTCCGGATCCAACTATGACAAAAGTTTGCGGCCGGTCAAGTCAG
CGTCTACAGCTGTGAACGTGGATTTCGACATCTCCCTGAAACAGATTATC
GACCTGGCGGAAAAGGAGTATTGTTTGTCTGATTCTGCTCCAATAGTTGA
TGACCCTCCAGAACCCTTTCCTGGCGGCATTCTCTCCTCACGTCTCCGCA
GTACGGACAACATGAAGATCGCTCTGGGATTTTTACTCTTAGCAACACTG
TTCATATGGATACCAGTGTCCATCAGCCAAGATGTAGCCGTGGCCTTGAA
GACGTCCCTCTTGTCCGGATCCAACTATGACAAAAGTTTGCGGCCGGTCA
AGTCAGCGTCTACAGCTGTGAACGTGGATTTCGACATCTCCCTGAAACAG
ATTATCGACCTGGCGGAAAAGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000012 | genome | Sc0000012:2617399..2625199 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL65530_cuf1 |
| Biotype | protein_coding |
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