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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL65639_cuf0 >transcript:BL65639_cuf0-protein ID=transcript:BL65639_cuf0-protein|Name=transcript:BL65639_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=246bp
MNGKSRHSVQITLILLFFVQYTDFIATCGRQLETDYPGLTVEPFGGLYLD
GVRHVATRDEAKLLLWLGNSFSNVSIHDHVKMLQEIRAQLSAEDRLVLAV
DMNTDREALSQAYGDQWIPIYRDNLISRFNKDFGGNMNAEKFDHNFDFVE
NPADGDTPSYVLKFLSSAGKQRVHFEKLGLDIDFEDGEKIHFCEGPNSSC
KWNLPQLRRLAEKSGFAVDAHWTNAEENYCVICLAPVDVSTSQHSV Run BLAST on NCBI mRNA from alignment at Sc0000491:78699..83286+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL65639_cuf0 ID=transcript:BL65639_cuf0|Name=transcript:BL65639_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4588bp|location=Sequence derived from alignment at Sc0000491:78699..83286+ (Branchiostoma lanceolatum)
CTTTTTTTTTAACGTTAGTGGCAACACTCCAAATTAAGTTACTTTGTAAC
TGATTTGGCTCCGAAACTGAGAATGTGACATTCCGGTGGCAGCCATTTTG
TTTATAGAGGTCACGTGTTCTATCTGTGAGTCTGTTTCGTGTTTTTTTTT
GTGTGACGTCAGCATTGCAGGAATTGTCGCTGCTCCTATACGTGTGTTGT
GGACATGCTACGGTTGTGAGTGGTAGGTAGCTCTTAGGGCAAAGAGTAAG
TGTTGTAGATTTGGGCCCCCTACCGACTTTCCTCGGAACTCTTCTATCTG
TATACACTCATACTCCCAAAATAGTTACTCAAGCAGCTGGATAAACTTTT
GAAACAGTCAGGCGTTTTAGACAGCATCCGCTGTCTTTCGTCAGTGACTA
AGGAGAGATCTGGCAGAACTAGATTTTATACCAAAACTCTGAATAGATAT
GTTAATGAATTGGAGACAATTTCAGATGGTTGAAGAGAATGAATGGTAAG
TCAAGACATAGTGTACAAATTACACTCATACTGTTGTTTTTTGTGCAATA
TACAGACTTTATCGCTACCTGCGGACGGCAGCTGGAGACAGACTACCCGG
GGCTGACTGTGGAGCCCTTCGGTGGGCTGTACCTGGACGGGGTGAGGCAT
GTTGCAACCCGGGATGAGGCCAAGCTACTGCTGTGGCTGGGGAACAGCTT
CAGTAACGTCTCCATCCATGATCACGTGAAGATGCTACAGGAGATCCGGG
CTCAACTCAGTGGTATGTAGTGAGTCGAAAATCACCCCCGGACCCACCTC
CAGTCATTATTTAGAAAGTCGGACTTTACATTAATATGTACATATCTCTA
TGGGCCATATTCTCTCACTGTCCGAAGTCTATAAAGCTACAAAATATATG
TTTGTATTTTGGCAGACTGATTCCTGCTTACTAGTAAGATAGGTGCTAAG
GTATCATCACGTGGCACTTATTGTCTTGCGGTACCTACTTGTAGTATGGT
CCACTTTGGGTCGTGTCCACGTGTCGAGGTTGTTGTCATGCCTTTATCAC
GTAAATTTCGTGTGCTGATCAGTGTTCGTGAAAATGGCCACACAGTATTG
TTTTCTTCACCCACGTCAAGCTAGCAATGGGGCAGACAAAGTTACTTAAC
TATTATTTCTTTGTAGAATACTTTGGACAACCTATAGGCCTTTAATTCAG
GTAGACAATTAGAAGGGAAACAAGAAGTGGACAATAGTAGGCCCCCGAAG
TACAATTCTTCATGATAAAGCTTAGTATAAATACACAGGGTAGAACAGAC
GGAAAAAGTTACAGACCATGCAGAGTCTTTTTTAGAAGAGCTGATGTTTA
TTCATTGGTTACACATTTGGCTCTGTCCGTGCGGTTTTAGATAAAATGAC
GTTTTGAATAAATTGACAAATAAATCGATTGGTAGCGCTACTGCCCTGAT
TCGGGTCCATCTAAAAGTGACGTAACACAGGTGTGCACATGGATTTGGGT
TCGAAATCACTCAAAATTATGGCGAGATTGACAGAAAGCAATAAACCACC
AACGCTAAAATCATAGATTTCGGTTCAAAGCTCCAAAAACTGAGAAAAAT
GTCTATTTTACTTAAATGTAGCTGAGGACAGGCTGGTGCTCGCTGTGGAT
ATGAACACTGACCGAGAAGCGTTGTCTCAAGCGTACGGGGATCAGTGGAT
ACCGATATATCGAGACAACCTGATCTCTCGTTTCAATAAGGTAACATTAA
TGCGTATCTATCTATTATAAGGTAACGGGCATTCAGATATGTATCTAGAT
TCGATGCGTCGGTGAAGGTAATGTTCTATCATAATCGCTCGTTCTCATTT
AAATGTACACATTTTGTTACTTCCGTTACCGTTTGAAGTAAGACGTTTCT
GACATTAAGATATGCACATGTAAAGTGCCTAACTGTCGTTTTTGAAAGAC
AGAAAAGTTTTAAGTCGTCATAAAAACGACAGTTTTGCACCTTTTATGTG
GGAAATCTTAATATCAGGAACGTCTTACTTGCTACGTTAACGGAAGTTAC
AAAATGTTTACATTAAATTAGAACGAGGTAATACATGACGGGCCGCCTTA
GTGAAAGAACGAAGAATACGGCGAAGATGAGTGAGAGAAGGTAATGCATA
CATTTTGATACTCTTATAAATAAGGCAAAAGCTTAACTTTGTTCGTATTT
TAAATGTAGTTCTCTTGCTTCTAATGTTTGTTTAAAGTATAGAGAGAATA
TAAGACTTTGTTGGTTACCTTTACGGACGGAATTTGTCGTTTTTTTTGCA
ACTACAAATTATTTTCCTTCCCTAGGACTTTGGCGGAAACATGAATGCTG
AGAAGTTTGATCACAACTTCGATTTTGTTGAGAACCCTGCGGATGGAGAC
ACGCCGAGCTATGTTCTGAAATTTCTCAGCAGTGCAGGCAAACAACGGGT
GCATTTTGGTGAGTGTTCGTGTGATCTACATCTACATTTCGATACCCCTA
TATAGCCCCATCAGGGCAAAGTAGGGGGGATTTGAGGTTCCGGGAAAAGG
CGGGCAGGCCTCCAGCCTGGCACGGAACGACTCAAAGGTGGGAGCCGTCA
CAACCGTGCCAGGCAGGGTTTTCCACTGAAGAATCTTGTTGGCAGCCGTC
AGTCTCGCAATATATGGCGTCGCATCCTGGTCAGTCTGTGGGTTGTCCGC
AGCGTCTGCTGTGGCTGTACAGTCCAATCTTGGATAGACAGACTCGTTTG
CAGTTTCTGCATGTGTATCCCTCTTCTGGCCTCGTGTGCGTTGAAGACTC
CGCCTGTCGTCGGCGCACCCTCCTCGCTTCCCACTGAAGAATAGTACGGG
GGAATTAGGAGTGTTTGTATGTGTCTGTTTTGGCGTAGATAGTTTAAAAC
TTGAGGTGGCGGTTCCCCCGGGTGCGCCCCTGGGCTGGTTTAAGTAAATT
GTCAGTGTCTATATCAAGATGGTTGTTAACTAGTTTGTAGAAGAAGGTGA
GGCGGGCGTTCCTCCTCTTTTCCTCAGTGATGATTATCTTTAAAAAAAGG
AACAGTAACTTGTGTATAGCCTTTCCAACAGGATACCATGATGGTTCTTT
ATTCACAACCAGGACCTGCATACAATTAACAGCCGACATTTCGATGACCA
TCTATCACCTTCCCCAGGGCAACACTGGCTTGTACTATTCCACACTGCAG
CTAGGTGTCGCTACTTACAGTGTCAAGTTTCGTCATCAGTCAGTATTGCT
CTAACGGACAAGCGGTTACCAAAAACGTCGGCCGTGGATTGAATAGAGAT
CCTGGTTGTGCATGAAGAAAAACGTCGTTATCCAGTGATTCCAGGCTTTC
TAGAAATACTCACGGCTTGCCAATGGCTAATCAAATCTAGACTTTGGCTG
TAAGGGAGTGTTGTTTTAAGCCTGTCTGTGTCTGTCTGTCTCTGTGTTGC
TCAAATCCCACTACATCATTTTTCGTTTTCGCGTCACAGAAGACAGTTCT
ATCGGTCTGCTTGTCTTCGTAATTCCTGCAACATATGTTTTCTCTGTAGA
AAAACTTGGTCTCGACATTGACTTTGAAGACGGCGAAAAGATCCATTTCT
GCGAGGGGCCAAACTCCAGTTGCAAGTGGAACCTACCACAGCTGCGCCGT
CTGGCGGAGAAGAGCGGCTTTGCAGTAGATGCTCACTGGACCAATGCTGA
GGAGAACTATTGTGTCATCTGCTTGGCTCCTGTAGATGTTAGTACCAGTC
AGCATTCTGTTTAATGCTTTAAGCATCCTGAAAACGCCATGTTTGGCACT
TCAGTCTAAGGGGAATATTCAAGATGAATATTCAAGATGAATGACAAATG
CATTATTTAGGGCGTTTGGGCTTAAGGACGTGTGATTTCCGTACTGGATC
AAGTACAACTGTTAGCTTGTAACGTCCACCGTCTTGATGGTGGGCACAGA
TGTAATCAAGTCTGGATCTAGCTGTTAAAGTATGAGAGAACATTTGCAAT
GTAGTTTGATTACTTGTTATTTTCAGACCTTTCTAACTAAAATTCATAGT
GATATATAGATAGCAAAGGTGCAAATGCAAAAATAAAAGGTAACTCCAAA
CATTTAGACTACTCCAAGTTACTTACAATGAAGAACAAAATCAAAACATT
ACGAGTTTAAGACACAGAACTTTCATCCCCACAAACTGCGAATTGCGTCA
GGTGGGCATAACCAGACTCATATAGAGCAAAGATCCTGTCAAATTCACAT
TAAAGGCATCCAGAGCATTTTATGAGGCTAGAAACTTGAATAAAAAAAAC
TTTAATTTCTAGTCATTCCTACACAGAGTAAGTTTCAACAACACTATACC
ATTACATATCGAAATTAAATGAGCAAAGATACGATGTCGTTGGTAAAAAC
ATGAATGTCCTCCTCTGTACATACAGGTCTGTGTTGAAAACACAAGTCAG
TATGATACACATCTTTGAAGTGCACGGTGGGCTTAGTTGCATTCATTGTA
CTGTGGTATGACTCATAAACTAAGTACATGTTGAATGTAAATGCAGTAGA
TCAAAATCAGTCTGGAATACATTATCTTATGAACATGG Coding sequence (CDS) from alignment at Sc0000491:78699..83286+ >transcript:BL65639_cuf0 ID=transcript:BL65639_cuf0|Name=transcript:BL65639_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2964bp|location=Sequence derived from alignment at Sc0000491:78699..83286+ (Branchiostoma lanceolatum)
ATGAATGGTAAGTCAAGACATAGTGTACAAATTACACTCATACTGTTGTT
TTTTGTGCAATATACAGACTTTATCGCTACCTGCGGACGGCAGCTGGAGA
CAGACTACCCGGGGCTGACTGTGGAGCCCTTCGGTGGGCTGTACCTGGAC
GGGGTGAGGCATGTTGCAACCCGGGATGAGGCCAAGCTACTGCTGTGGCT
GGGGAACAGCTTCAGTAACGTCTCCATCCATGATCACGTGAAGATGCTAC
AGGAGATCCGGGCTCAACTCAGTGCTGAGGACAGGCTGGTGCTCGCTGTG
GATATGAACACTGACCGAGAAGCGTTGTCTCAAGCGTACGGGGATCAGTG
GATACCGATATATCGAGACAACCTGATCTCTCGTTTCAATAAGGACTTTG
GCGGAAACATGAATGCTGAGAAGTTTGATCACAACTTCGATTTTGTTGAG
AACCCTGCGGATGGAGACACGCCGAGCTATGTTCTGAAATTTCTCAGCAG
TGCAGGCAAACAACGGGTGCATTTTGAAAAACTTGGTCTCGACATTGACT
TTGAAGACGGCGAAAAGATCCATTTCTGCGAGGGGCCAAACTCCAGTTGC
AAGTGGAACCTACCACAGCTGCGCCGTCTGGCGGAGAAGAGCGGCTTTGC
AGTAGATGCTCACTGGACCAATGCTGAGGAGAACTATTGTGTCATCTGCT
TGGCTCCTGTAGATGTTAGTACCAGTCAGCATTCTGTTTAAATGAATGGT
AAGTCAAGACATAGTGTACAAATTACACTCATACTGTTGTTTTTTGTGCA
ATATACAGACTTTATCGCTACCTGCGGACGGCAGCTGGAGACAGACTACC
CGGGGCTGACTGTGGAGCCCTTCGGTGGGCTGTACCTGGACGGGGTGAGG
CATGTTGCAACCCGGGATGAGGCCAAGCTACTGCTGTGGCTGGGGAACAG
CTTCAGTAACGTCTCCATCCATGATCACGTGAAGATGCTACAGGAGATCC
GGGCTCAACTCAGTGCTGAGGACAGGCTGGTGCTCGCTGTGGATATGAAC
ACTGACCGAGAAGCGTTGTCTCAAGCGTACGGGGATCAGTGGATACCGAT
ATATCGAGACAACCTGATCTCTCGTTTCAATAAGGACTTTGGCGGAAACA
TGAATGCTGAGAAGTTTGATCACAACTTCGATTTTGTTGAGAACCCTGCG
GATGGAGACACGCCGAGCTATGTTCTGAAATTTCTCAGCAGTGCAGGCAA
ACAACGGGTGCATTTTGAAAAACTTGGTCTCGACATTGACTTTGAAGACG
GCGAAAAGATCCATTTCTGCGAGGGGCCAAACTCCAGTTGCAAGTGGAAC
CTACCACAGCTGCGCCGTCTGGCGGAGAAGAGCGGCTTTGCAGTAGATGC
TCACTGGACCAATGCTGAGGAGAACTATTGTGTCATCTGCTTGGCTCCTG
TAGATGTTAGTACCAGTCAGCATTCTGTTTAAATGAATGGTAAGTCAAGA
CATAGTGTACAAATTACACTCATACTGTTGTTTTTTGTGCAATATACAGA
CTTTATCGCTACCTGCGGACGGCAGCTGGAGACAGACTACCCGGGGCTGA
CTGTGGAGCCCTTCGGTGGGCTGTACCTGGACGGGGTGAGGCATGTTGCA
ACCCGGGATGAGGCCAAGCTACTGCTGTGGCTGGGGAACAGCTTCAGTAA
CGTCTCCATCCATGATCACGTGAAGATGCTACAGGAGATCCGGGCTCAAC
TCAGTGCTGAGGACAGGCTGGTGCTCGCTGTGGATATGAACACTGACCGA
GAAGCGTTGTCTCAAGCGTACGGGGATCAGTGGATACCGATATATCGAGA
CAACCTGATCTCTCGTTTCAATAAGGACTTTGGCGGAAACATGAATGCTG
AGAAGTTTGATCACAACTTCGATTTTGTTGAGAACCCTGCGGATGGAGAC
ACGCCGAGCTATGTTCTGAAATTTCTCAGCAGTGCAGGCAAACAACGGGT
GCATTTTGAAAAACTTGGTCTCGACATTGACTTTGAAGACGGCGAAAAGA
TCCATTTCTGCGAGGGGCCAAACTCCAGTTGCAAGTGGAACCTACCACAG
CTGCGCCGTCTGGCGGAGAAGAGCGGCTTTGCAGTAGATGCTCACTGGAC
CAATGCTGAGGAGAACTATTGTGTCATCTGCTTGGCTCCTGTAGATGTTA
GTACCAGTCAGCATTCTGTTTAAATGAATGGTAAGTCAAGACATAGTGTA
CAAATTACACTCATACTGTTGTTTTTTGTGCAATATACAGACTTTATCGC
TACCTGCGGACGGCAGCTGGAGACAGACTACCCGGGGCTGACTGTGGAGC
CCTTCGGTGGGCTGTACCTGGACGGGGTGAGGCATGTTGCAACCCGGGAT
GAGGCCAAGCTACTGCTGTGGCTGGGGAACAGCTTCAGTAACGTCTCCAT
CCATGATCACGTGAAGATGCTACAGGAGATCCGGGCTCAACTCAGTGCTG
AGGACAGGCTGGTGCTCGCTGTGGATATGAACACTGACCGAGAAGCGTTG
TCTCAAGCGTACGGGGATCAGTGGATACCGATATATCGAGACAACCTGAT
CTCTCGTTTCAATAAGGACTTTGGCGGAAACATGAATGCTGAGAAGTTTG
ATCACAACTTCGATTTTGTTGAGAACCCTGCGGATGGAGACACGCCGAGC
TATGTTCTGAAATTTCTCAGCAGTGCAGGCAAACAACGGGTGCATTTTGA
AAAACTTGGTCTCGACATTGACTTTGAAGACGGCGAAAAGATCCATTTCT
GCGAGGGGCCAAACTCCAGTTGCAAGTGGAACCTACCACAGCTGCGCCGT
CTGGCGGAGAAGAGCGGCTTTGCAGTAGATGCTCACTGGACCAATGCTGA
GGAGAACTATTGTGTCATCTGCTTGGCTCCTGTAGATGTTAGTACCAGTC
AGCATTCTGTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000491 | genome | Sc0000491:78699..83286 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL65639_cuf0 |
| Biotype | protein_coding |
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