transcript:BL65853_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL65853_cuf0
Unique Nametranscript:BL65853_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL65853_cuf0

>transcript:BL65853_cuf0-protein ID=transcript:BL65853_cuf0-protein|Name=transcript:BL65853_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=129bp
MTPSFLMLCSVAAAAMKMNAKLNSVNLETSTDNLIGEGLHQWDVVFLGDM
FYDEEFASTVSDWLKTLKQSNSSCQILIGDPGRFSLEEHPVKSLLFRVAE
YELDEVCRRENNGLTLGGVWAYDPTRTMK
Run BLAST on NCBI

mRNA from alignment at xfSc0016976:4..829+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL65853_cuf0 ID=transcript:BL65853_cuf0|Name=transcript:BL65853_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=826bp|location=Sequence derived from alignment at xfSc0016976:4..829+ (Branchiostoma lanceolatum)
CAAATGTGTAAGTCATTTGCATGAATAGAATTGTTCATGGAGATATGAGG
TCGTGGAACTCTTGTTGGCTTTGCATTAGTCCTCTGTAACGGCATGGTAA
GGGAGAAAGAACAGGCAATCAGCAATTTGAAACAGGTTTTTTAACATGAT
TGTTGAATCAGTCACTATTATTTCGCCTCTGCTGGCTTTTTATGTCTTTT
TAGGCATTTTTAAGGGCTTCCTATTTTATCAGGTTTTCTTTTTTCAGCCA
GCTTAACTGGGAGGTTAGAACTTATTAGAATACAGGTGCGTTAACCCAAT
GACGCCATCATTTCTTATGTTGTGTTCAGTTGCAGCTGCTGCTATGAAGA
TGAATGCAAAACTCAACAGTGTCAACTTGGAGACATCTACGGACAACCTG
ATTGGTGAAGGTCTCCACCAATGGGATGTTGTATTTCTTGGTGACATGTT
CTATGATGAAGAATTTGCTTCTACAGTTTCTGATTGGTTAAAGACTTTGA
AACAATCAAACTCTTCTTGTCAAATTCTAATTGGGGATCCAGGGAGGTTT
TCTTTGGAGGAACACCCAGTTAAAAGTCTTCTTTTCAGAGTTGCAGAATA
TGAGCTAGATGAAGTTTGTAGAAGAGAAAACAATGGTCTAACACTTGGAG
GTGTATGGGCATATGACCCAACAAGGACAATGAAGTAGCTAGAGCATCAT
TGAATTTTTTTGTATTCCTTAGGCAGTAAAGCCCCCCTCTCACTGGACCC
GCAACACGTTGGCGACCTCGCTGCAACCGAGCGATTTGACATCGCGCTAA
ATGAATTTCATCGATAAAAACGAATC

Coding sequence (CDS) from alignment at xfSc0016976:4..829+

>transcript:BL65853_cuf0 ID=transcript:BL65853_cuf0|Name=transcript:BL65853_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=390bp|location=Sequence derived from alignment at xfSc0016976:4..829+ (Branchiostoma lanceolatum)
ATGACGCCATCATTTCTTATGTTGTGTTCAGTTGCAGCTGCTGCTATGAA
GATGAATGCAAAACTCAACAGTGTCAACTTGGAGACATCTACGGACAACC
TGATTGGTGAAGGTCTCCACCAATGGGATGTTGTATTTCTTGGTGACATG
TTCTATGATGAAGAATTTGCTTCTACAGTTTCTGATTGGTTAAAGACTTT
GAAACAATCAAACTCTTCTTGTCAAATTCTAATTGGGGATCCAGGGAGGT
TTTCTTTGGAGGAACACCCAGTTAAAAGTCTTCTTTTCAGAGTTGCAGAA
TATGAGCTAGATGAAGTTTGTAGAAGAGAAAACAATGGTCTAACACTTGG
AGGTGTATGGGCATATGACCCAACAAGGACAATGAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL65853gene:BL65853Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL65853_cuf0-E1BL65853_cuf0-E1-1564476830-544566Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL65853_cuf0transcript:BL65853_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0016976genomexfSc0016976:4..829 +
Properties
Property NameValue
Transcript idBL65853_cuf0
Biotypeprotein_coding