transcript:BL66695_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL66695_cuf0
Unique Nametranscript:BL66695_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL66695_cuf0

>transcript:BL66695_cuf0-protein ID=transcript:BL66695_cuf0-protein|Name=transcript:BL66695_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=127bp
MTYNNLIKSTEEVSLTTLPKRKGDKSTPFISHTRLSAARKKKAREPHEKR
STRSTLKNVNKTQRQLDDAYVTAQAEYMYIKGKKNKISLLHASRQYEAAW
ETICRACMHPYILNAFMQSGRIAIFLT
Run BLAST on NCBI

mRNA from alignment at xfSc0015731:1..841+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL66695_cuf0 ID=transcript:BL66695_cuf0|Name=transcript:BL66695_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=841bp|location=Sequence derived from alignment at xfSc0015731:1..841+ (Branchiostoma lanceolatum)
AAACCCAATGAAAAACATTGACTGGAAGTTGGTAACATCTGATCATACCA
TCAAAGACCAGTTTGTGCTGGAAGAAAAAAATCGCCCTCTCTGAACCATC
GGATGACGCAGAAATGACCTACAACAACTTGATTAAGTCCACTGAAGAGG
TGTCTCTCACCACCTTACCCAAGAGGAAAGGGGATAAATCCACACCATTT
ATTTCTCACACAAGGCTCTCGGCTGCACGCAAGAAGAAAGCTAGGGAACC
TCATGAGAAAAGATCAACAAGATCTACCCTCAAGAATGTTAACAAAACAC
AAAGACAGCTAGACGACGCCTACGTCACTGCTCAAGCCGAGTACATGTAC
ATCAAAGGGAAAAAAAATAAGATCAGTCTCCTTCATGCATCTAGACAATA
TGAAGCCGCATGGGAGACTATTTGTAGAGCATGCATGCATCCCTACATCC
TAAATGCTTTCATGCAGTCCGGCAGAATAGCAATTTTTCTGACATAGAAT
CTGCCGTAGGCCAGGGGCGTCCGGTCGTCAAATCCGGTCATGAAATTTTT
ATCAGATCACTAAATATCATACAGTCCCATATGCAGTTACAGTTATATGA
ACAGGCAGTGTGTCTAACTGCTGTGATGATATTCCCTTGGTGCAATTACA
ATGCTAAAGCCAGATTTTTCAAAGCATACCCCTTTTCATTGGGTCAAAAT
GGCAACTTTTTTTCAAAAGCGCTTGTTTTCCTGTAGAAAGTTGCCAGTGA
GCTGTATGGACCCCTGATGATTGTCTTCACTCTGATAGCAGTGCTGCTAT
ACAACATGAAGTCTTCTGGGCACACTGTGGTAAGTATGCAG

Coding sequence (CDS) from alignment at xfSc0015731:1..841+

>transcript:BL66695_cuf0 ID=transcript:BL66695_cuf0|Name=transcript:BL66695_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=384bp|location=Sequence derived from alignment at xfSc0015731:1..841+ (Branchiostoma lanceolatum)
ATGACCTACAACAACTTGATTAAGTCCACTGAAGAGGTGTCTCTCACCAC
CTTACCCAAGAGGAAAGGGGATAAATCCACACCATTTATTTCTCACACAA
GGCTCTCGGCTGCACGCAAGAAGAAAGCTAGGGAACCTCATGAGAAAAGA
TCAACAAGATCTACCCTCAAGAATGTTAACAAAACACAAAGACAGCTAGA
CGACGCCTACGTCACTGCTCAAGCCGAGTACATGTACATCAAAGGGAAAA
AAAATAAGATCAGTCTCCTTCATGCATCTAGACAATATGAAGCCGCATGG
GAGACTATTTGTAGAGCATGCATGCATCCCTACATCCTAAATGCTTTCAT
GCAGTCCGGCAGAATAGCAATTTTTCTGACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL66695gene:BL66695Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL66695_cuf0-E1BL66695_cuf0-E1-1564476830-543969Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL66695_cuf0transcript:BL66695_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0015731genomexfSc0015731:1..841 +
Properties
Property NameValue
Transcript idBL66695_cuf0
Biotypeprotein_coding