transcript:BL66768_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL66768_cuf0
Unique Nametranscript:BL66768_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL66768_cuf0

>transcript:BL66768_cuf0-protein ID=transcript:BL66768_cuf0-protein|Name=transcript:BL66768_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=210bp
LIQNYTWLKQTKINKCMYKFFLLSNNLMDTAHNVQLSWLYLFDSPIPWKV
VYTLLTYCTIDPTLRFFQYKILHKFLPTNRLLHIWKLTDDPLCSFCHLEE
ETYLHVFWECPNLIAFWNKLKIWYLQKTGQEILLNGFNIIFGNLFPGTPV
IQNFIILLAKYFIYHSRKSKKVNFESFIVYLFFFNKVELYMATRKNKLEK
HLGKWGRLCV
Run BLAST on NCBI

mRNA from alignment at Sc0000018:1728311..1729157+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL66768_cuf0 ID=transcript:BL66768_cuf0|Name=transcript:BL66768_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=847bp|location=Sequence derived from alignment at Sc0000018:1728311..1729157+ (Branchiostoma lanceolatum)
CTTTAATTCAGAACTATACATGGTTAAAACAGACAAAAATCAATAAATGT
ATGTATAAATTCTTTTTACTTTCCAATAACCTTATGGATACTGCACATAA
TGTACAATTATCTTGGCTGTACCTCTTTGACTCCCCCATCCCATGGAAAG
TAGTATACACTTTGTTGACTTACTGCACTATAGACCCAACACTTAGGTTT
TTTCAGTACAAAATCTTACATAAGTTTTTACCTACAAACAGATTATTGCA
TATTTGGAAATTGACTGATGACCCGTTGTGCTCATTTTGTCATCTTGAAG
AGGAGACTTACCTTCATGTGTTTTGGGAATGTCCTAACTTAATAGCTTTT
TGGAATAAACTCAAAATTTGGTACCTTCAAAAAACAGGTCAAGAAATTCT
TTTAAATGGTTTTAATATCATTTTCGGAAACCTTTTCCCAGGCACCCCTG
TAATCCAAAACTTTATTATCTTATTAGCTAAATATTTTATATACCATAGT
AGAAAGTCCAAAAAAGTGAATTTTGAATCCTTTATTGTTTATTTATTCTT
CTTCAATAAAGTTGAATTATATATGGCTACAAGGAAAAATAAATTGGAAA
AACATCTGGGTAAATGGGGCAGATTATGTGTGTGAAGTACATTACATTTT
GCCATACCTTCTGTGTTATTTACACATATCATTCTGTCAGTTTTTACTAT
TTTTTGTTGCATATCTATCATAAATCACATTATTTATGTACATTTATGTT
ATTTTGGTTTGATAATATTTAAGTTGGATGGTCCACCGCCTTTGTTATTT
CTTTTATTTTGTTGGAATAAAGAATAAAAAAAAAAAAAAAAGAAGTG

Coding sequence (CDS) from alignment at Sc0000018:1728311..1729157+

>transcript:BL66768_cuf0 ID=transcript:BL66768_cuf0|Name=transcript:BL66768_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=633bp|location=Sequence derived from alignment at Sc0000018:1728311..1729157+ (Branchiostoma lanceolatum)
TTAATTCAGAACTATACATGGTTAAAACAGACAAAAATCAATAAATGTAT
GTATAAATTCTTTTTACTTTCCAATAACCTTATGGATACTGCACATAATG
TACAATTATCTTGGCTGTACCTCTTTGACTCCCCCATCCCATGGAAAGTA
GTATACACTTTGTTGACTTACTGCACTATAGACCCAACACTTAGGTTTTT
TCAGTACAAAATCTTACATAAGTTTTTACCTACAAACAGATTATTGCATA
TTTGGAAATTGACTGATGACCCGTTGTGCTCATTTTGTCATCTTGAAGAG
GAGACTTACCTTCATGTGTTTTGGGAATGTCCTAACTTAATAGCTTTTTG
GAATAAACTCAAAATTTGGTACCTTCAAAAAACAGGTCAAGAAATTCTTT
TAAATGGTTTTAATATCATTTTCGGAAACCTTTTCCCAGGCACCCCTGTA
ATCCAAAACTTTATTATCTTATTAGCTAAATATTTTATATACCATAGTAG
AAAGTCCAAAAAAGTGAATTTTGAATCCTTTATTGTTTATTTATTCTTCT
TCAATAAAGTTGAATTATATATGGCTACAAGGAAAAATAAATTGGAAAAA
CATCTGGGTAAATGGGGCAGATTATGTGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL66768gene:BL66768Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL66768_cuf0-E1BL66768_cuf0-E1-1564476830-138093Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL66768_cuf0transcript:BL66768_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:1728311..1729157 +
Properties
Property NameValue
Transcript idBL66768_cuf0
Biotypeprotein_coding