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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL66775_cuf0 >transcript:BL66775_cuf0-protein ID=transcript:BL66775_cuf0-protein|Name=transcript:BL66775_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=320bp
ISAEVARLAASLANKTEESVGTTQVLLGGECKSGECNIGNLITNSMVHHN
IKHPDQTSWNDVAIAVLNSGGIRSIIDQGSITVGDVVGCIPFENTIDIVE
LRGEDVLRMLEHSAILIGHPRFLQVSGLRVVYDKTKAPGHRVVKVDALCS
TGCLIPEYRPLDPTASYKIIMPTFLANGGDGYNMIAENKTAHYIPGDLDT
DILIEYIKTASPVSVGLEGRIRVINSTQEEPLKPCPTVAASSTGHFFTTD
HDHDFEDEPDDKNIIALAVGIPAALVLTIAVIACVIWGVKRSRNNFTMTN
SNHGMAQANPVFAMEKGING Run BLAST on NCBI mRNA from alignment at Sc0000230:267..3295+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL66775_cuf0 ID=transcript:BL66775_cuf0|Name=transcript:BL66775_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3029bp|location=Sequence derived from alignment at Sc0000230:267..3295+ (Branchiostoma lanceolatum)
CATCTCCGCCGAAGTGGCCAGGCTGGCGGCAAGCCTCGCCAACAAGACGG
AGGAGTCGGTTGGGACAACACAAGTACTCCTTGGAGGGGAGTGCAAGTCT
GGGGAATGCAACATAGGTGCGCAACTTGTTTTGCAATGATCATGAAGTTG
TATACTGTCACATAATCAGAGGTGCCTTAGAGCTACAGTAACCAACAATA
TGCATTGAAAGAATGTGAACTGGGCCAGGGGTGACAGTTTCTAGTATTGT
CCTTATCATTCTCTCCGTTTTCCGTTTGAGTTTAGGAGTCATTTTACTTC
TACTGGGCATCAGATTGAACGAGTGCCTGTCTACTTCTTGTACAAAAAGT
GTGAATGATTTTAAGTCATGTCATATCACCAGGTAACCTGATCACAAACT
CCATGGTTCACCACAACATCAAACATCCTGACCAAACCAGCTGGAACGAT
GTCGCCATTGCTGTCCTGAACTCCGGCGGTATCAGGTCCATCATTGACCA
AGGTAGGCACTTATGTGTCACCTCTAACTTCGTACCCACCGACTCTTACT
TTATTGATCAGCGCGTAAATCAAGCACAACTTTGTATGGTGTATTGGGCG
TTAAGAATAACCAATGGGTTTTAAAACACGAATATGAGCTCCGCGGAAGG
ACTAGTCAACATACAATAAGTCATAACAACAGCTTGGCAAATTGTGTACG
ACACAGACTTTCAAACAAAACGTCATATGTGGTCACATGCGTACACCTAA
TATGATATAAGGGTTTGTCTTACGTTGATGAATCAGCCCATCTTAACATG
CAAAGTAAGGTAGCAAATCCATAGACAGAACCACTGGTAGAATTCAGTTA
ACTTTGTTTGACCCCCACGTCCACGCTGACTGTTCAACCATGACCACGGT
GTAAACATACCAAAGTCTCTATTTGTTGATATATTGAACGGGGTCTTTAC
TGACTGGCGGAAGTTCGGTAGCCACAATGGCAACCAAACTTAATGATCAT
TCAGGTGCTTCATTATCCTTGGAACAAACAAGTCATGTACTAAATTCAAA
GATGGAGCATGTGCGATACTTATCTTATAACATTATATAGAGGCAATAAA
TGTTAGATATATAATCAAACATTTCGGAAGTAAGTGTATCCATGTAGGTC
CCCTGCTTTCTCCATAAATTGTGTATAAAAAATGAACTTGGTCAATTAAT
TTGTAGGTTCTATCACTGTGGGAGACGTCGTTGGATGCATCCCTTTCGAG
AACACCATAGACATCGTGGAGTTGCGCGGGGAGGATGTGTTACGTATGCT
GGAGCACTCCGCCATCCTTATCGGCCACCCAAGATTCCTGCAAGTCTCTG
GTACGTATACATGTACAGATTTCTATTGGGAATGGTTATCATCATAAATA
ACTGCAAAATATTCTTATACCAACAGCTGTTAACATGGCACAAGGTGCTG
GCCTTGTATAGGAGCCACTTCGATCCAGTTGCCGGTACCTCTCAGATTTG
TTCTGAAAAGCTTCAATGAATAAATAGATAGATGAAATGGTAAGAGACAA
ACACATTTGTTTATTCTGCTTTCAGGTCTCCGCGTGGTGTATGACAAGAC
AAAAGCACCAGGCCACAGAGTGGTGAAAGTAGACGCACTCTGCAGCACCG
GCTGCCTCATCCCGGAGTACCGGCCGCTCGACCCCACCGCCAGCTACAAG
ATCATCATGCCCACGTTCTTGGCAAACGGCGGGGACGGATATAACATGAT
AGCCGAGAACAAGACAGCTCACTATATACCAGGTATGCAACCATCTGTTT
AAGCCCCCATTCCACTAGACGGCGATCTCGCTGCGCTCTCGCTGTGACCT
AAATCGGATTTGTATAACCCTTGCTCCATGATTGGAATATCATGCAAAAG
TATGATCGAAAAGACAACAAAACACACAAAAGCGTAAAGCGATTCATTTT
TTTTAATCTATGAAATTCATTAAGCGCTGTTAATTTTAGGTCGCAGAGAG
CGCGCGGCGAGAGCGCTGTCCTAGTGGAATGGGGGTATAACTAACTGTGC
GTGGTTGGTATGAAGCAAGTGTTAGGAGTAAGCAATTAAGTTAAGTTTGC
TACAACACAGTAAATATTTCTGTCCAACCTACAGGTGACCTTGACACAGA
TATCCTGATTGAGTACATCAAGACCGCCTCACCTGTGTCTGTAGGGCTGG
AGGGACGCATCCGAGTCATCAACTCAACCCAGGAGGAGCCACTGAAGCCC
TGTCCAACCGTGGCAGCATCTTCTACTGGCCACTTTTTCACAACAGGTAC
ATGTCGAGAGTGACTGACATTGGCATGTACGTGTACATGCCACTAGATAC
ATGCCACTAGACACATCTTTTTGTACTCATGCCTTTTGAACAATTCAAAG
TTATTAAGTACAAACACTGACCTTTATGAATGTCTGTTTTCAGATCATGA
TCACGACTTTGAGGACGAACCTGACGACAAGAACATCATCGCCTTAGCCG
TGGGAATCCCTGCCGCTCTGGTCCTAACCATTGCCGTCATAGCCTGTGTG
ATTTGGGGTGTGAAGAGAAGTAGAAACAACTTCACCATGACAAATAGTAA
CCATGGCATGGCCCAAGCAAACCCAGTTTTTGCAATGGAAAAGGGGATAA
ATGGCTAGAACAACCACTAAAAAGGCATTACAACTTGCATTTCTTTATAT
CCACCCATGGACAATGTACTATTAGACTTTGCTGCATGTTCAGTGTCATT
GTCATTACTATTCAAGTCAATTTTGTTTTCCTTACTTTGTTTTGCTGCAA
ACATAACTGTACAATGAAAGTGGTGTGTGTGTGTGTGTGTTTGTGTTCAA
TGTGTGCTTTATGTCTATAGGTATGAATTTAGTCATTGTATGAGCTAGTC
TGGAAGATAACGCTAATGACACAATGTCACAGATGTCAAGTAACAGTATG
TACATCATGACTTTTACACATAAGTTATTGTATTGGTATTAAGTGATTGG
GACAACTGGCATTTTGCCATGTATCATGC Coding sequence (CDS) from alignment at Sc0000230:267..3295+ >transcript:BL66775_cuf0 ID=transcript:BL66775_cuf0|Name=transcript:BL66775_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=5778bp|location=Sequence derived from alignment at Sc0000230:267..3295+ (Branchiostoma lanceolatum)
ATCTCCGCCGAAGTGGCCAGGCTGGCGGCAAGCCTCGCCAACAAGACGGA
GGAGTCGGTTGGGACAACACAAGTACTCCTTGGAGGGGAGTGCAAGTCTG
GGGAATGCAACATAGGTAACCTGATCACAAACTCCATGGTTCACCACAAC
ATCAAACATCCTGACCAAACCAGCTGGAACGATGTCGCCATTGCTGTCCT
GAACTCCGGCGGTATCAGGTCCATCATTGACCAAGGTTCTATCACTGTGG
GAGACGTCGTTGGATGCATCCCTTTCGAGAACACCATAGACATCGTGGAG
TTGCGCGGGGAGGATGTGTTACGTATGCTGGAGCACTCCGCCATCCTTAT
CGGCCACCCAAGATTCCTGCAAGTCTCTGGTCTCCGCGTGGTGTATGACA
AGACAAAAGCACCAGGCCACAGAGTGGTGAAAGTAGACGCACTCTGCAGC
ACCGGCTGCCTCATCCCGGAGTACCGGCCGCTCGACCCCACCGCCAGCTA
CAAGATCATCATGCCCACGTTCTTGGCAAACGGCGGGGACGGATATAACA
TGATAGCCGAGAACAAGACAGCTCACTATATACCAGGTGACCTTGACACA
GATATCCTGATTGAGTACATCAAGACCGCCTCACCTGTGTCTGTAGGGCT
GGAGGGACGCATCCGAGTCATCAACTCAACCCAGGAGGAGCCACTGAAGC
CCTGTCCAACCGTGGCAGCATCTTCTACTGGCCACTTTTTCACAACAGAT
CATGATCACGACTTTGAGGACGAACCTGACGACAAGAACATCATCGCCTT
AGCCGTGGGAATCCCTGCCGCTCTGGTCCTAACCATTGCCGTCATAGCCT
GTGTGATTTGGGGTGTGAAGAGAAGTAGAAACAACTTCACCATGACAAAT
AGTAACCATGGCATGGCCCAAGCAAACCCAGTTTTTGCAATGGAAAAGGG
GATAAATGGCTAGATCTCCGCCGAAGTGGCCAGGCTGGCGGCAAGCCTCG
CCAACAAGACGGAGGAGTCGGTTGGGACAACACAAGTACTCCTTGGAGGG
GAGTGCAAGTCTGGGGAATGCAACATAGGTAACCTGATCACAAACTCCAT
GGTTCACCACAACATCAAACATCCTGACCAAACCAGCTGGAACGATGTCG
CCATTGCTGTCCTGAACTCCGGCGGTATCAGGTCCATCATTGACCAAGGT
TCTATCACTGTGGGAGACGTCGTTGGATGCATCCCTTTCGAGAACACCAT
AGACATCGTGGAGTTGCGCGGGGAGGATGTGTTACGTATGCTGGAGCACT
CCGCCATCCTTATCGGCCACCCAAGATTCCTGCAAGTCTCTGGTCTCCGC
GTGGTGTATGACAAGACAAAAGCACCAGGCCACAGAGTGGTGAAAGTAGA
CGCACTCTGCAGCACCGGCTGCCTCATCCCGGAGTACCGGCCGCTCGACC
CCACCGCCAGCTACAAGATCATCATGCCCACGTTCTTGGCAAACGGCGGG
GACGGATATAACATGATAGCCGAGAACAAGACAGCTCACTATATACCAGG
TGACCTTGACACAGATATCCTGATTGAGTACATCAAGACCGCCTCACCTG
TGTCTGTAGGGCTGGAGGGACGCATCCGAGTCATCAACTCAACCCAGGAG
GAGCCACTGAAGCCCTGTCCAACCGTGGCAGCATCTTCTACTGGCCACTT
TTTCACAACAGATCATGATCACGACTTTGAGGACGAACCTGACGACAAGA
ACATCATCGCCTTAGCCGTGGGAATCCCTGCCGCTCTGGTCCTAACCATT
GCCGTCATAGCCTGTGTGATTTGGGGTGTGAAGAGAAGTAGAAACAACTT
CACCATGACAAATAGTAACCATGGCATGGCCCAAGCAAACCCAGTTTTTG
CAATGGAAAAGGGGATAAATGGCTAGATCTCCGCCGAAGTGGCCAGGCTG
GCGGCAAGCCTCGCCAACAAGACGGAGGAGTCGGTTGGGACAACACAAGT
ACTCCTTGGAGGGGAGTGCAAGTCTGGGGAATGCAACATAGGTAACCTGA
TCACAAACTCCATGGTTCACCACAACATCAAACATCCTGACCAAACCAGC
TGGAACGATGTCGCCATTGCTGTCCTGAACTCCGGCGGTATCAGGTCCAT
CATTGACCAAGGTTCTATCACTGTGGGAGACGTCGTTGGATGCATCCCTT
TCGAGAACACCATAGACATCGTGGAGTTGCGCGGGGAGGATGTGTTACGT
ATGCTGGAGCACTCCGCCATCCTTATCGGCCACCCAAGATTCCTGCAAGT
CTCTGGTCTCCGCGTGGTGTATGACAAGACAAAAGCACCAGGCCACAGAG
TGGTGAAAGTAGACGCACTCTGCAGCACCGGCTGCCTCATCCCGGAGTAC
CGGCCGCTCGACCCCACCGCCAGCTACAAGATCATCATGCCCACGTTCTT
GGCAAACGGCGGGGACGGATATAACATGATAGCCGAGAACAAGACAGCTC
ACTATATACCAGGTGACCTTGACACAGATATCCTGATTGAGTACATCAAG
ACCGCCTCACCTGTGTCTGTAGGGCTGGAGGGACGCATCCGAGTCATCAA
CTCAACCCAGGAGGAGCCACTGAAGCCCTGTCCAACCGTGGCAGCATCTT
CTACTGGCCACTTTTTCACAACAGATCATGATCACGACTTTGAGGACGAA
CCTGACGACAAGAACATCATCGCCTTAGCCGTGGGAATCCCTGCCGCTCT
GGTCCTAACCATTGCCGTCATAGCCTGTGTGATTTGGGGTGTGAAGAGAA
GTAGAAACAACTTCACCATGACAAATAGTAACCATGGCATGGCCCAAGCA
AACCCAGTTTTTGCAATGGAAAAGGGGATAAATGGCTAGATCTCCGCCGA
AGTGGCCAGGCTGGCGGCAAGCCTCGCCAACAAGACGGAGGAGTCGGTTG
GGACAACACAAGTACTCCTTGGAGGGGAGTGCAAGTCTGGGGAATGCAAC
ATAGGTAACCTGATCACAAACTCCATGGTTCACCACAACATCAAACATCC
TGACCAAACCAGCTGGAACGATGTCGCCATTGCTGTCCTGAACTCCGGCG
GTATCAGGTCCATCATTGACCAAGGTTCTATCACTGTGGGAGACGTCGTT
GGATGCATCCCTTTCGAGAACACCATAGACATCGTGGAGTTGCGCGGGGA
GGATGTGTTACGTATGCTGGAGCACTCCGCCATCCTTATCGGCCACCCAA
GATTCCTGCAAGTCTCTGGTCTCCGCGTGGTGTATGACAAGACAAAAGCA
CCAGGCCACAGAGTGGTGAAAGTAGACGCACTCTGCAGCACCGGCTGCCT
CATCCCGGAGTACCGGCCGCTCGACCCCACCGCCAGCTACAAGATCATCA
TGCCCACGTTCTTGGCAAACGGCGGGGACGGATATAACATGATAGCCGAG
AACAAGACAGCTCACTATATACCAGGTGACCTTGACACAGATATCCTGAT
TGAGTACATCAAGACCGCCTCACCTGTGTCTGTAGGGCTGGAGGGACGCA
TCCGAGTCATCAACTCAACCCAGGAGGAGCCACTGAAGCCCTGTCCAACC
GTGGCAGCATCTTCTACTGGCCACTTTTTCACAACAGATCATGATCACGA
CTTTGAGGACGAACCTGACGACAAGAACATCATCGCCTTAGCCGTGGGAA
TCCCTGCCGCTCTGGTCCTAACCATTGCCGTCATAGCCTGTGTGATTTGG
GGTGTGAAGAGAAGTAGAAACAACTTCACCATGACAAATAGTAACCATGG
CATGGCCCAAGCAAACCCAGTTTTTGCAATGGAAAAGGGGATAAATGGCT
AGATCTCCGCCGAAGTGGCCAGGCTGGCGGCAAGCCTCGCCAACAAGACG
GAGGAGTCGGTTGGGACAACACAAGTACTCCTTGGAGGGGAGTGCAAGTC
TGGGGAATGCAACATAGGTAACCTGATCACAAACTCCATGGTTCACCACA
ACATCAAACATCCTGACCAAACCAGCTGGAACGATGTCGCCATTGCTGTC
CTGAACTCCGGCGGTATCAGGTCCATCATTGACCAAGGTTCTATCACTGT
GGGAGACGTCGTTGGATGCATCCCTTTCGAGAACACCATAGACATCGTGG
AGTTGCGCGGGGAGGATGTGTTACGTATGCTGGAGCACTCCGCCATCCTT
ATCGGCCACCCAAGATTCCTGCAAGTCTCTGGTCTCCGCGTGGTGTATGA
CAAGACAAAAGCACCAGGCCACAGAGTGGTGAAAGTAGACGCACTCTGCA
GCACCGGCTGCCTCATCCCGGAGTACCGGCCGCTCGACCCCACCGCCAGC
TACAAGATCATCATGCCCACGTTCTTGGCAAACGGCGGGGACGGATATAA
CATGATAGCCGAGAACAAGACAGCTCACTATATACCAGGTGACCTTGACA
CAGATATCCTGATTGAGTACATCAAGACCGCCTCACCTGTGTCTGTAGGG
CTGGAGGGACGCATCCGAGTCATCAACTCAACCCAGGAGGAGCCACTGAA
GCCCTGTCCAACCGTGGCAGCATCTTCTACTGGCCACTTTTTCACAACAG
ATCATGATCACGACTTTGAGGACGAACCTGACGACAAGAACATCATCGCC
TTAGCCGTGGGAATCCCTGCCGCTCTGGTCCTAACCATTGCCGTCATAGC
CTGTGTGATTTGGGGTGTGAAGAGAAGTAGAAACAACTTCACCATGACAA
ATAGTAACCATGGCATGGCCCAAGCAAACCCAGTTTTTGCAATGGAAAAG
GGGATAAATGGCTAGATCTCCGCCGAAGTGGCCAGGCTGGCGGCAAGCCT
CGCCAACAAGACGGAGGAGTCGGTTGGGACAACACAAGTACTCCTTGGAG
GGGAGTGCAAGTCTGGGGAATGCAACATAGGTAACCTGATCACAAACTCC
ATGGTTCACCACAACATCAAACATCCTGACCAAACCAGCTGGAACGATGT
CGCCATTGCTGTCCTGAACTCCGGCGGTATCAGGTCCATCATTGACCAAG
GTTCTATCACTGTGGGAGACGTCGTTGGATGCATCCCTTTCGAGAACACC
ATAGACATCGTGGAGTTGCGCGGGGAGGATGTGTTACGTATGCTGGAGCA
CTCCGCCATCCTTATCGGCCACCCAAGATTCCTGCAAGTCTCTGGTCTCC
GCGTGGTGTATGACAAGACAAAAGCACCAGGCCACAGAGTGGTGAAAGTA
GACGCACTCTGCAGCACCGGCTGCCTCATCCCGGAGTACCGGCCGCTCGA
CCCCACCGCCAGCTACAAGATCATCATGCCCACGTTCTTGGCAAACGGCG
GGGACGGATATAACATGATAGCCGAGAACAAGACAGCTCACTATATACCA
GGTGACCTTGACACAGATATCCTGATTGAGTACATCAAGACCGCCTCACC
TGTGTCTGTAGGGCTGGAGGGACGCATCCGAGTCATCAACTCAACCCAGG
AGGAGCCACTGAAGCCCTGTCCAACCGTGGCAGCATCTTCTACTGGCCAC
TTTTTCACAACAGATCATGATCACGACTTTGAGGACGAACCTGACGACAA
GAACATCATCGCCTTAGCCGTGGGAATCCCTGCCGCTCTGGTCCTAACCA
TTGCCGTCATAGCCTGTGTGATTTGGGGTGTGAAGAGAAGTAGAAACAAC
TTCACCATGACAAATAGTAACCATGGCATGGCCCAAGCAAACCCAGTTTT
TGCAATGGAAAAGGGGATAAATGGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000230 | genome | Sc0000230:267..3295 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL66775_cuf0 |
| Biotype | protein_coding |
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