transcript:BL66801_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL66801_cuf0
Unique Nametranscript:BL66801_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL66801_cuf0

>transcript:BL66801_cuf0-protein ID=transcript:BL66801_cuf0-protein|Name=transcript:BL66801_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=173bp
RRKLRHMLIFLLIFLEEPNTSQAECSCLHLQYCSARCPNQNLTTIPQNLP
TSIYDLFLAGNRITSVNRSELSRYSDLSTLDLGKNCISMVDCFPILPRLQ
TLYLNNNKITNICPGAFSNLPKLSSLGMSYNGITNIQAGTFANPSRLEVL
WLTWNQIKSIQPGAFANLTHIEY
Run BLAST on NCBI

mRNA from alignment at Sc0000015:41322..41843+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL66801_cuf0 ID=transcript:BL66801_cuf0|Name=transcript:BL66801_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=522bp|location=Sequence derived from alignment at Sc0000015:41322..41843+ (Branchiostoma lanceolatum)
GAGAAGAAAGCTGCGACACATGCTGATTTTCCTTCTCATCTTCCTAGAGG
AACCCAACACGTCACAAGCTGAATGCAGCTGTCTACATTTGCAATATTGC
AGCGCTAGGTGTCCCAACCAGAACCTTACCACCATCCCTCAGAACCTCCC
AACATCCATCTATGACTTGTTTTTGGCTGGTAATCGTATCACATCCGTGA
ATAGGTCTGAACTGTCAAGATATAGTGATTTATCTACGTTGGATTTGGGA
AAAAATTGCATAAGCATGGTTGATTGTTTCCCAATCCTACCCAGACTTCA
AACGTTATACTTAAACAACAACAAAATAACTAACATCTGTCCTGGTGCGT
TTTCAAATCTACCCAAACTCAGCAGCTTGGGCATGTCCTACAACGGTATA
ACAAACATTCAGGCAGGTACATTTGCAAATCCCTCCCGACTAGAAGTGTT
ATGGCTGACCTGGAACCAGATAAAATCAATTCAGCCTGGCGCATTTGCAA
ATCTAACTCACATCGAATACAT

Coding sequence (CDS) from alignment at Sc0000015:41322..41843+

>transcript:BL66801_cuf0 ID=transcript:BL66801_cuf0|Name=transcript:BL66801_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=519bp|location=Sequence derived from alignment at Sc0000015:41322..41843+ (Branchiostoma lanceolatum)
AGAAGAAAGCTGCGACACATGCTGATTTTCCTTCTCATCTTCCTAGAGGA
ACCCAACACGTCACAAGCTGAATGCAGCTGTCTACATTTGCAATATTGCA
GCGCTAGGTGTCCCAACCAGAACCTTACCACCATCCCTCAGAACCTCCCA
ACATCCATCTATGACTTGTTTTTGGCTGGTAATCGTATCACATCCGTGAA
TAGGTCTGAACTGTCAAGATATAGTGATTTATCTACGTTGGATTTGGGAA
AAAATTGCATAAGCATGGTTGATTGTTTCCCAATCCTACCCAGACTTCAA
ACGTTATACTTAAACAACAACAAAATAACTAACATCTGTCCTGGTGCGTT
TTCAAATCTACCCAAACTCAGCAGCTTGGGCATGTCCTACAACGGTATAA
CAAACATTCAGGCAGGTACATTTGCAAATCCCTCCCGACTAGAAGTGTTA
TGGCTGACCTGGAACCAGATAAAATCAATTCAGCCTGGCGCATTTGCAAA
TCTAACTCACATCGAATAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL66801gene:BL66801Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL66801_cuf0-E1BL66801_cuf0-E1-1564476830-123087Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL66801_cuf0transcript:BL66801_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000015genomeSc0000015:41322..41843 +
Properties
Property NameValue
Transcript idBL66801_cuf0
Biotypeprotein_coding