transcript:BL67999_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL67999_cuf0
Unique Nametranscript:BL67999_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL67999_cuf0

>transcript:BL67999_cuf0-protein ID=transcript:BL67999_cuf0-protein|Name=transcript:BL67999_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=211bp
DDSEPHPGPPEPRYLTIGDHVVEYPQSEEECVYSKPEDVYGHKEEESADD
KPEDIHGHKEEESADEKPDVYQHKAQEKVSLTCKAKARVIGMWTKVKSNR
VILPALGCGMLVMASVITVSILATHAVHERKEANGSKIQDDMMIRATLKA
PGPPLLTTFFDDGNQTTSLAAPTELELTEPFAITSLTTDTLPVTITPLPT
TAMNGCMLKPC
Run BLAST on NCBI

mRNA from alignment at Sc0000175:101256..104258+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL67999_cuf0 ID=transcript:BL67999_cuf0|Name=transcript:BL67999_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3003bp|location=Sequence derived from alignment at Sc0000175:101256..104258+ (Branchiostoma lanceolatum)
GTGACGACAGCGAACCGCACCCTGGTCCACCCGAGCCTCGGTACCTGACC
ATAGGAGACCACGTGGTGGAGTATCCGCAGTCAGAAGAGGAGTGTGTCTA
CAGCAAGCCAGAAGATGTCTACGGACACAAAGAAGAAGAGTCTGCTGACG
ACAAACCGGAGGATATCCACGGGCACAAAGAAGAGGAGTCTGCTGACGAA
AAGCCAGATGTTTACCAACACAAAGCTCAAGAGAAAGTGAGCCTCACTTG
CAAGGCTAAAGGTACGTCTAAAGATACACTCACAAATCAGGGACCAGCCA
TTGCTGCTATAGTCGATAGGACCAGAAAGTTCCAAAGCCTTTGTCATGAA
ATATTAATTGGTACTCTAATTTAAAATCAGGCATTTAGGAGAAATCAACA
GATCAAGACTTTGAATAGGTCAATATATGGTTGTCCGTTTGCATGTTTCA
TGTCTTTTAGATTTTATAGATCCTTAAAAGATTTCTTTATCGTTTCTTTC
AAACATTTGCATTTTCAGCTCCTGTAACATGCAACATGTAACACAGTGCT
GCAGCTCTTGCTGTACACATGTTGATTATGAAGGTCCACACAATATTGTA
TAGATATTTCATATTCAGAGTAATGCTTATGAGCGGGGATCATTTTGGAG
TTACCGATTTATGCGTTATATACATGTACTACAATGTATATATTGCTTGG
GGCTTCGTAGCATTGCGTGCATCATGTATACAAATGCACTGTTTCGTATT
TGCATCGTTATGTTTGTATAGACCATCATGCTTTCACTAGCTATAGGGAA
TGCTTGAATTTCTTGTGATATAGAGGATTAGATTTTTGTTGGCTGTTTGT
TTGGTTGTTCATTTTAACTGCTTGGAAAGGCATGTGGAAAACCGACACAA
CAGTAACGTCTTTTAGTGAATTTGAATTCCTACTTAAGAATTAGAAGCTT
TATACATTTTAACGTAAAGCCTAAAGGCAGTATTGTTTTTGGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTCTGTGTGTCTGTGTGTGTGTATTTTTCTGATGATATTTGGTAT
GTGGCTAGGTCTTGCGAAGGTCAGGGTCATTTGTGAGCCTCCATGTGTCC
TTGATATTGTGCTTTTTACCTTCGCCGAGAAGGTTATGCAGAGGGTAGCG
TTTGTATGTATGTTTGTAACCACCAGCGTAACTCAAGAAGGCTTAGATGG
ATTGTCTTGATATTTGGTAGGTGGGTAGGTCTTGATGAGACTTGGAAATG
ATTAGATTTTGGGTCCCCTAGCGGCTTGTTACGGTACTGCAGCGGAACTT
CCTGTTTTGATATCTCGTGTTATGGACAAGCTATGGAACTGATTTTTAGT
GGTAGATAGCTCTTTGGACAGAGAGTAAATGGTATAGGTTTTGGCCCCCT
AGCAGCTTTTTTGGTTCAGACTTTGAAAGGGTATAACTCAAGAAGGCCTT
GATGGATGGTAATACATTTTGGTAAGTAGATAGCTTGAGTGATGATGTAC
ATGATTAGATACTTGTTATGCAAATCAATATCTAATTTGCATAATTAATG
AGGAAAGTTTATACAGCCGCCAAATTCCATGGTAGGACTCTCAAACATGT
GACATATGTATCTGAGGAAGAGAGAAATGTTAATTGATATCAACTATGCA
AATGAGGACCTCATTTGCATAATTAATGAGAAAAACTTTAACTCAAGATG
GGCTTGATGGATGGTCATGAATTTTTCTGTATATCTTCTGTTTTGACATA
CCATACTTGATTGTTGGGTGGCAAATAGCTGTAGGGGTCCATATAGGTTG
GGATCCCCTAACAGCCTGTTATCTTTTGTGTTCTATTTTAGCACGTGTCA
TTGGCATGTGGACTAAGGTGAAATCTAACAGAGTAATCTTGCCTGCACTG
GGTTGTGGGATGCTGGTGATGGCGTCAGTTATCACCGTTTCAATCCTGGC
AACTCATGCCGTACATGAGAGAAAGGTAGGCCAGAAGGTCTTCATCAAAA
TGTGCCATTTGCAACAGTCGCTTCGCAGCACAAAGTTGCCTTTTTCAACT
GCAGGGCCATTATATATGTATATCATTATATAGATCTTGTTGACCCTGTC
GCGCCTATGTTATTTTATGCACAAATATCTACGAACTAGAATTTCTAGAT
TGTCCATGGTTCGATCCCCAAAAGAAGCTGTCGAGAACCGGCTTCTCACA
CAGATGTTTGTTATACGCTTGTAGGAGGCAAACGGTTCGAAGATACAAGA
CGACATGATGATCAGGGCGACCTTAAAGGCGCCAGGGCCTCCACTATTGA
CGACATTCTTCGACGACGGTAACCAAACTACTTCGCTTGCTGCACCAACT
GAACTGGAGTTGACGGAACCATTCGCAATCACCAGTCTGACCACCGACAC
CCTGCCAGTAACAATCACGCCCCTGCCAACCACAGGTATGTAATGCTTGT
TTGGGATCCTCAGTGCTCAGTAGCTTATCCAGTCGGTGCAAAAGAGAACC
TACATTCTGATTGGCTATTTCACAAGAGCGCCCTAGGCCTATCCTGCTTA
GAAAGAAACAGCCAATAGGAGACAAGTAGAGGGCATAAAAGCAGGAGCCA
CTCTCTTGTAATCCTCTAGAACTTTCTAATGATAAAATCGAAGCCGGCAA
TTAGCGGATTTTCTCTCTTTCAGTAATTCTTCAGACTTTCAATTGATCAT
AGGTAAGCAAACATAGGATTCTCTATGATGCATTGATGCTAAGATATCAA
TTGTGACGAAAATAAAATACCTTCGATGAATTGTGTATATTCGGAATTAC
AGAAACATACAAACAGTTTAAAAGATGTGGACTGACACATGCAGAAAGAC
GGACATACAGACAGACATGCAAAATATTAGATACTTTGTTCTTATTCTTG
TTATCACCTTTTTTCCCACCACAGCCATGAACGGATGTATGCTGAAGCCA
TGT

Coding sequence (CDS) from alignment at Sc0000175:101256..104258+

>transcript:BL67999_cuf0 ID=transcript:BL67999_cuf0|Name=transcript:BL67999_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2532bp|location=Sequence derived from alignment at Sc0000175:101256..104258+ (Branchiostoma lanceolatum)
GACGACAGCGAACCGCACCCTGGTCCACCCGAGCCTCGGTACCTGACCAT
AGGAGACCACGTGGTGGAGTATCCGCAGTCAGAAGAGGAGTGTGTCTACA
GCAAGCCAGAAGATGTCTACGGACACAAAGAAGAAGAGTCTGCTGACGAC
AAACCGGAGGATATCCACGGGCACAAAGAAGAGGAGTCTGCTGACGAAAA
GCCAGATGTTTACCAACACAAAGCTCAAGAGAAAGTGAGCCTCACTTGCA
AGGCTAAAGCACGTGTCATTGGCATGTGGACTAAGGTGAAATCTAACAGA
GTAATCTTGCCTGCACTGGGTTGTGGGATGCTGGTGATGGCGTCAGTTAT
CACCGTTTCAATCCTGGCAACTCATGCCGTACATGAGAGAAAGGAGGCAA
ACGGTTCGAAGATACAAGACGACATGATGATCAGGGCGACCTTAAAGGCG
CCAGGGCCTCCACTATTGACGACATTCTTCGACGACGGTAACCAAACTAC
TTCGCTTGCTGCACCAACTGAACTGGAGTTGACGGAACCATTCGCAATCA
CCAGTCTGACCACCGACACCCTGCCAGTAACAATCACGCCCCTGCCAACC
ACAGCCATGAACGGATGTATGCTGAAGCCATGTGACGACAGCGAACCGCA
CCCTGGTCCACCCGAGCCTCGGTACCTGACCATAGGAGACCACGTGGTGG
AGTATCCGCAGTCAGAAGAGGAGTGTGTCTACAGCAAGCCAGAAGATGTC
TACGGACACAAAGAAGAAGAGTCTGCTGACGACAAACCGGAGGATATCCA
CGGGCACAAAGAAGAGGAGTCTGCTGACGAAAAGCCAGATGTTTACCAAC
ACAAAGCTCAAGAGAAAGTGAGCCTCACTTGCAAGGCTAAAGCACGTGTC
ATTGGCATGTGGACTAAGGTGAAATCTAACAGAGTAATCTTGCCTGCACT
GGGTTGTGGGATGCTGGTGATGGCGTCAGTTATCACCGTTTCAATCCTGG
CAACTCATGCCGTACATGAGAGAAAGGAGGCAAACGGTTCGAAGATACAA
GACGACATGATGATCAGGGCGACCTTAAAGGCGCCAGGGCCTCCACTATT
GACGACATTCTTCGACGACGGTAACCAAACTACTTCGCTTGCTGCACCAA
CTGAACTGGAGTTGACGGAACCATTCGCAATCACCAGTCTGACCACCGAC
ACCCTGCCAGTAACAATCACGCCCCTGCCAACCACAGCCATGAACGGATG
TATGCTGAAGCCATGTGACGACAGCGAACCGCACCCTGGTCCACCCGAGC
CTCGGTACCTGACCATAGGAGACCACGTGGTGGAGTATCCGCAGTCAGAA
GAGGAGTGTGTCTACAGCAAGCCAGAAGATGTCTACGGACACAAAGAAGA
AGAGTCTGCTGACGACAAACCGGAGGATATCCACGGGCACAAAGAAGAGG
AGTCTGCTGACGAAAAGCCAGATGTTTACCAACACAAAGCTCAAGAGAAA
GTGAGCCTCACTTGCAAGGCTAAAGCACGTGTCATTGGCATGTGGACTAA
GGTGAAATCTAACAGAGTAATCTTGCCTGCACTGGGTTGTGGGATGCTGG
TGATGGCGTCAGTTATCACCGTTTCAATCCTGGCAACTCATGCCGTACAT
GAGAGAAAGGAGGCAAACGGTTCGAAGATACAAGACGACATGATGATCAG
GGCGACCTTAAAGGCGCCAGGGCCTCCACTATTGACGACATTCTTCGACG
ACGGTAACCAAACTACTTCGCTTGCTGCACCAACTGAACTGGAGTTGACG
GAACCATTCGCAATCACCAGTCTGACCACCGACACCCTGCCAGTAACAAT
CACGCCCCTGCCAACCACAGCCATGAACGGATGTATGCTGAAGCCATGTG
ACGACAGCGAACCGCACCCTGGTCCACCCGAGCCTCGGTACCTGACCATA
GGAGACCACGTGGTGGAGTATCCGCAGTCAGAAGAGGAGTGTGTCTACAG
CAAGCCAGAAGATGTCTACGGACACAAAGAAGAAGAGTCTGCTGACGACA
AACCGGAGGATATCCACGGGCACAAAGAAGAGGAGTCTGCTGACGAAAAG
CCAGATGTTTACCAACACAAAGCTCAAGAGAAAGTGAGCCTCACTTGCAA
GGCTAAAGCACGTGTCATTGGCATGTGGACTAAGGTGAAATCTAACAGAG
TAATCTTGCCTGCACTGGGTTGTGGGATGCTGGTGATGGCGTCAGTTATC
ACCGTTTCAATCCTGGCAACTCATGCCGTACATGAGAGAAAGGAGGCAAA
CGGTTCGAAGATACAAGACGACATGATGATCAGGGCGACCTTAAAGGCGC
CAGGGCCTCCACTATTGACGACATTCTTCGACGACGGTAACCAAACTACT
TCGCTTGCTGCACCAACTGAACTGGAGTTGACGGAACCATTCGCAATCAC
CAGTCTGACCACCGACACCCTGCCAGTAACAATCACGCCCCTGCCAACCA
CAGCCATGAACGGATGTATGCTGAAGCCATGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL67999gene:BL67999Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL67999_cuf0transcript:BL67999_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL67999_cuf0-E1BL67999_cuf0-E1-1564476830-367349Branchiostoma lanceolatumexon
BL67999_cuf0-E2BL67999_cuf0-E2-1564476830-367351Branchiostoma lanceolatumexon
BL67999_cuf0-E3BL67999_cuf0-E3-1564476830-367353Branchiostoma lanceolatumexon
BL67999_cuf0-E4BL67999_cuf0-E4-1564476830-367355Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000175genomeSc0000175:101256..104258 +
Properties
Property NameValue
Transcript idBL67999_cuf0
Biotypeprotein_coding