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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL68710_cuf1 >transcript:BL68710_cuf1-protein ID=transcript:BL68710_cuf1-protein|Name=transcript:BL68710_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=447bp
MNGDPRRNPRARLLCFLHAPHFGTTTRQVCTPYQILCIRHLSSEGLIKTA
GSSRSISCSPGGLLFQPGLSATFATCLTVPSMQARMANFLELLPVVLLSI
AFATFIKAEQSWQSGANLEHYSPSTPGLATTNDRASNIAAGLSSLADTKD
ISANHTPYTISLVDVVGTHVLSGSEPSNHLRESHNGGLKLMDNTEVRFSA
MEDAVEEHHHSQKKTDNVSRGGDSVLIVTINITLGPETVFSTPSTLRKDA
PEAESTDGLDDYEATTELRQQSVLCLGGSQRWTGLLRNNFNSIINLIVWQ
PCCNLFHLVFLSLKIGFCCAYMLVISAVILLCISIAFPSKVSNKLIQNYF
LPAIIGMLVYLLGVLVLYAILPVICMFLVVVYRSITNWFPKMRLTSEETI
ARCTVELPMKVLSLALAQIMKKTTPTHFVNPQYQQQHIHFRRNRRCG Run BLAST on NCBI mRNA from alignment at Sc0000082:325000..328001- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL68710_cuf1 ID=transcript:BL68710_cuf1|Name=transcript:BL68710_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3002bp|location=Sequence derived from alignment at Sc0000082:325000..328001- (Branchiostoma lanceolatum)
GCAAACTTTAACCGAAATGCCCCTTCAAACACTTTAAGCTCGTTAAAAAC
AACTTCTATTTTCAAAAAGAACACTCGAGATTCGGGTGAGCACAGAGAGC
TTTGGGGTAACCGTGCTGCAGGCGCGTTCTCAAGTTCTTGACCTTTATTT
TCCACTTGCGTCAATGAACCGACCTCTATTGTTCACACGGCATACCTCGT
TGCCATTGGCAACCTACTGGTGCTGCTACCGTAACCTCAGTTGTTTTTGT
GAGACGAAATCCGTAGGAAGTCAAATTTTACGGTTTCTATGTTGGATTAT
ATCATGATTTTTATCTATGAACAACACTAAGTCGGTTGTATATGACACCA
CTCAAGAAACGTACGCGTTGAAGCGTCGGGAGTAGACTTTCTTTCTAAAC
CGCTACAATTTGAAGAGTTACGGTGATCGACAGGTACAAATGAACGGTGA
CCCGCGTCGAAACCCGAGGGCGAGATTATTGTGTTTCCTGCATGCCCCGC
ATTTCGGGACAACAACCAGACAAGTGTGCACTCCATACCAAATATTATGC
ATACGTCATTTGTCATCAGAGGGCCTTATAAAAACTGCCGGTTCGAGCAG
ATCGATCAGTTGTAGCCCAGGTGGTCTCTTGTTTCAGCCGGGTCTTTCTG
CAACATTTGCAACCTGTTTAACAGTACCGAGCATGCAGGCAAGGATGGCC
AACTTCCTGGAGTTGTTACCGGTAAGTGTGTACATGTAGAATTCTACACT
GCCTGCCGTGTACTGTATTCCGTGTACCTGTAGTTAAGAGAGGTTTCTCT
GAATGCAAAATGCAATGTACTTGTAATTCAGGTAAGCCATGAAACAGTGC
TGTTTTACTGTGCGTAAACGTGGGCTGTAACGTTACAACAAACGTTTAGG
CTCCACCTTTCACACGTATTCATATCTGAGCAAAGACATTGTAAGTGCAG
ATTTGTGGCAATGGTATGGGTTCTGTGGGATATTTAGGGCTACACGTACT
AAAACCAGAATGTGACAGTGTTACAGGTTCTGTTATTTGGAACAGGTATC
TGAATATCACGTGCATGTAGGCGTAGGTATTCACCATGAACCCGAGGTCA
TCATAGTAACGTTAGCCCTGAATGGCTGAACGGCCTGAAGGGAGGCATCT
CTCAGAACTGTGCTAGTCTCTATCAGACTCTTTTGCTTGCTGAAAAAAAT
GGCAGAAATTTGCCATATCATCCTGTCTATTTAGCCGATTTATACCTCTT
TCAATTCCAAAACTTTATGCTGTTCTTTCTTTTTGTGTAAGGGAACTAGC
TCGTATCCTGAGTACCATCCGGTCACTACCGGGGTTCCTACACTTGCTAC
CCTGAAAGATTTGTAGGAGCCCCGGTAGAAATCGGATGGCACCCAGGCTA
ATGAGCTAGGCCAGATACAATTTATGGTATAGCCGGGCTTAGTTTTCCAT
CTTCTCCGTCTATATATTCATCTTTGTTATCATTATCAATATCATTTCAT
CTTATAATCTTCATCACTAATAGATTCATTTATCTATATGTCCAGGTTGT
TTTGCTGTCGATCGCTTTTGCAACCTTCATCAAGGCTGAGCAGTCTTGGC
AATCTGGAGCCAACCTAGAGCACTACTCGCCAAGCACTCCTGGTCTAGCC
ACGACCAATGACCGAGCGTCGAACATTGCAGCTGGACTCTCCTCATTGGC
TGATACAAAGGACATCAGCGCAAATCATACACCTTACACGATTTCATTGG
TGGACGTGGTTGGGACTCATGTCCTAAGTGGAAGTGAGCCATCCAATCAC
CTGCGAGAATCGCACAATGGCGGACTGAAATTGATGGACAACACTGAAGT
TCGATTTTCAGCGATGGAAGATGCTGTGGAAGAACATCATCATTCACAAA
AAAAGACAGACAACGTCTCAAGAGGTGGAGATTCAGTTCTTATCGTTACC
ATCAACATAACCTTGGGTCCAGAAACAGTTTTTTCTACACCCAGTACACT
ACGCAAGGACGCACCCGAGGCCGAATCTACTGATGGTTTGGATGACTACG
AAGCTACAACTGAACTTCGTCAACAATCTGTTTTATGCCTTGGTGGCTCA
CAACGCTGGACTGGTCTTCTGAGAAACAACTTCAACAGTATTATTAACCT
CATAGTTTGGCAGCCATGTTGTAACCTTTTCCACTTGGTGTTCCTGTCTC
TTAAGATAGGGTTTTGCTGTGCTTACATGCTTGTAATATCCGCGGTGATT
CTCCTATGTATTTCCATCGCATTCCCCTCCAAAGTATCAAACAAGCTTAT
CCAGAACTATTTTCTCCCTGCTATCATTGGGATGTTAGTATATTTGCTCG
GTGTTCTCGTCCTATATGCAATCCTGCCTGTAATCTGTATGTTCCTGGTA
GTTGTTTACAGATCGATAACTAACTGGTTTCCGAAAATGAGGTTAACGTC
CGAAGAGACTATCGCACGGTGTACCGTAGAACTGCCGATGAAGGTGCTAT
CGCTAGCCCTGGCTCAAATCATGAAGAAGACAACACCTACTCACTTCGTA
AACCCACAGTACCAGCAACAACATATTCACTTCCGCCGAAACAGAAGATG
CGGATAGGATGATCCTTGAGATACCTTTGAGGACGTTTTTTGGACGTTGC
ATATTTAGAAAATGTACAAATAGAGTTCTAGTATAGAGAGTTTTTTTAGC
ACAGCTACTAGACAACACTGGGTTACACATCACTAGGATTCTTGTTTATA
GAAAATGTTACGTTGGTATGTGTCTTTTACTTTGTATGAGCAATAACTTT
CGGTGATTGTATCGTATTCCAGTCAGTTTTATATTGAGAAGTCAAGTTTT
GCTTGTTTTAGCCCAAAATATTTGATATATTTATTCTAAGTTATGTTGCC
TAAGCTTATGTATATATATGCTACTCCTGTATCGACAAATGGAATTTGTC
GGTCAACTTTCACACATTCATATGTAATGTCAAAATAAAGATGACTTCTG
CG Coding sequence (CDS) from alignment at Sc0000082:325000..328001- >transcript:BL68710_cuf1 ID=transcript:BL68710_cuf1|Name=transcript:BL68710_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2688bp|location=Sequence derived from alignment at Sc0000082:325000..328001- (Branchiostoma lanceolatum)
ATGAACGGTGACCCGCGTCGAAACCCGAGGGCGAGATTATTGTGTTTCCT
GCATGCCCCGCATTTCGGGACAACAACCAGACAAGTGTGCACTCCATACC
AAATATTATGCATACGTCATTTGTCATCAGAGGGCCTTATAAAAACTGCC
GGTTCGAGCAGATCGATCAGTTGTAGCCCAGGTGGTCTCTTGTTTCAGCC
GGGTCTTTCTGCAACATTTGCAACCTGTTTAACAGTACCGAGCATGCAGG
CAAGGATGGCCAACTTCCTGGAGTTGTTACCGGTTGTTTTGCTGTCGATC
GCTTTTGCAACCTTCATCAAGGCTGAGCAGTCTTGGCAATCTGGAGCCAA
CCTAGAGCACTACTCGCCAAGCACTCCTGGTCTAGCCACGACCAATGACC
GAGCGTCGAACATTGCAGCTGGACTCTCCTCATTGGCTGATACAAAGGAC
ATCAGCGCAAATCATACACCTTACACGATTTCATTGGTGGACGTGGTTGG
GACTCATGTCCTAAGTGGAAGTGAGCCATCCAATCACCTGCGAGAATCGC
ACAATGGCGGACTGAAATTGATGGACAACACTGAAGTTCGATTTTCAGCG
ATGGAAGATGCTGTGGAAGAACATCATCATTCACAAAAAAAGACAGACAA
CGTCTCAAGAGGTGGAGATTCAGTTCTTATCGTTACCATCAACATAACCT
TGGGTCCAGAAACAGTTTTTTCTACACCCAGTACACTACGCAAGGACGCA
CCCGAGGCCGAATCTACTGATGGTTTGGATGACTACGAAGCTACAACTGA
ACTTCGTCAACAATCTGTTTTATGCCTTGGTGGCTCACAACGCTGGACTG
GTCTTCTGAGAAACAACTTCAACAGTATTATTAACCTCATAGTTTGGCAG
CCATGTTGTAACCTTTTCCACTTGGTGTTCCTGTCTCTTAAGATAGGGTT
TTGCTGTGCTTACATGCTTGTAATATCCGCGGTGATTCTCCTATGTATTT
CCATCGCATTCCCCTCCAAAGTATCAAACAAGCTTATCCAGAACTATTTT
CTCCCTGCTATCATTGGGATGTTAGTATATTTGCTCGGTGTTCTCGTCCT
ATATGCAATCCTGCCTGTAATCTGTATGTTCCTGGTAGTTGTTTACAGAT
CGATAACTAACTGGTTTCCGAAAATGAGGTTAACGTCCGAAGAGACTATC
GCACGGTGTACCGTAGAACTGCCGATGAAGGTGCTATCGCTAGCCCTGGC
TCAAATCATGAAGAAGACAACACCTACTCACTTCGTAAACCCACAGTACC
AGCAACAACATATTCACTTCCGCCGAAACAGAAGATGCGGATAGATGAAC
GGTGACCCGCGTCGAAACCCGAGGGCGAGATTATTGTGTTTCCTGCATGC
CCCGCATTTCGGGACAACAACCAGACAAGTGTGCACTCCATACCAAATAT
TATGCATACGTCATTTGTCATCAGAGGGCCTTATAAAAACTGCCGGTTCG
AGCAGATCGATCAGTTGTAGCCCAGGTGGTCTCTTGTTTCAGCCGGGTCT
TTCTGCAACATTTGCAACCTGTTTAACAGTACCGAGCATGCAGGCAAGGA
TGGCCAACTTCCTGGAGTTGTTACCGGTTGTTTTGCTGTCGATCGCTTTT
GCAACCTTCATCAAGGCTGAGCAGTCTTGGCAATCTGGAGCCAACCTAGA
GCACTACTCGCCAAGCACTCCTGGTCTAGCCACGACCAATGACCGAGCGT
CGAACATTGCAGCTGGACTCTCCTCATTGGCTGATACAAAGGACATCAGC
GCAAATCATACACCTTACACGATTTCATTGGTGGACGTGGTTGGGACTCA
TGTCCTAAGTGGAAGTGAGCCATCCAATCACCTGCGAGAATCGCACAATG
GCGGACTGAAATTGATGGACAACACTGAAGTTCGATTTTCAGCGATGGAA
GATGCTGTGGAAGAACATCATCATTCACAAAAAAAGACAGACAACGTCTC
AAGAGGTGGAGATTCAGTTCTTATCGTTACCATCAACATAACCTTGGGTC
CAGAAACAGTTTTTTCTACACCCAGTACACTACGCAAGGACGCACCCGAG
GCCGAATCTACTGATGGTTTGGATGACTACGAAGCTACAACTGAACTTCG
TCAACAATCTGTTTTATGCCTTGGTGGCTCACAACGCTGGACTGGTCTTC
TGAGAAACAACTTCAACAGTATTATTAACCTCATAGTTTGGCAGCCATGT
TGTAACCTTTTCCACTTGGTGTTCCTGTCTCTTAAGATAGGGTTTTGCTG
TGCTTACATGCTTGTAATATCCGCGGTGATTCTCCTATGTATTTCCATCG
CATTCCCCTCCAAAGTATCAAACAAGCTTATCCAGAACTATTTTCTCCCT
GCTATCATTGGGATGTTAGTATATTTGCTCGGTGTTCTCGTCCTATATGC
AATCCTGCCTGTAATCTGTATGTTCCTGGTAGTTGTTTACAGATCGATAA
CTAACTGGTTTCCGAAAATGAGGTTAACGTCCGAAGAGACTATCGCACGG
TGTACCGTAGAACTGCCGATGAAGGTGCTATCGCTAGCCCTGGCTCAAAT
CATGAAGAAGACAACACCTACTCACTTCGTAAACCCACAGTACCAGCAAC
AACATATTCACTTCCGCCGAAACAGAAGATGCGGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000082 | genome | Sc0000082:325000..328001 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL68710_cuf1 |
| Biotype | protein_coding |
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