transcript:BL68730_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL68730_cuf0
Unique Nametranscript:BL68730_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL68730_cuf0

>transcript:BL68730_cuf0-protein ID=transcript:BL68730_cuf0-protein|Name=transcript:BL68730_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=194bp
SETNFRTFMRHLDGLIHDVERRRETTDLNEINVFIKRIFVLTTKASKIQR
ACHDMPADDEFRLAISQVATELRSILRKWNAKRAHALPKPKRGETFSPAE
EVRGEGPGRPRKDILTEDVLHDIIDLDYTVTDVAKKYGVNRSTIYRRLSE
DGINIQQERHSRLTQAEVQDIVRTAQVEHGFIQMGQKVMAGYLR
Run BLAST on NCBI

mRNA from alignment at xfSc0006006:699..1382+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL68730_cuf0 ID=transcript:BL68730_cuf0|Name=transcript:BL68730_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=684bp|location=Sequence derived from alignment at xfSc0006006:699..1382+ (Branchiostoma lanceolatum)
TCAGAAACCAATTTTCGTACATTCATGCGACATCTCGATGGACTCATACA TGATGTGGAAAGAAGAAGAGAGACAACTGACCTGAATGAAATAAACGTTT TCATCAAACGAATCTTTGTCCTCACAACAAAAGCATCAAAAATACAAAGA GCATGCCACGATATGCCTGCCGATGATGAATTCAGATTGGCAATTTCTCA GGTCGCCACAGAACTGCGCAGCATCCTTAGAAAATGGAACGCCAAACGGG CCCACGCTCTACCGAAGCCGAAAAGGGGGGAAACGTTCTCTCCGGCAGAA GAAGTGAGAGGGGAAGGACCGGGGAGGCCCCGTAAAGATATTTTGACTGA AGATGTCTTACATGATATCATAGATTTGGATTATACAGTCACTGACGTGG CCAAAAAGTACGGCGTGAACAGATCAACCATATATAGGCGCCTAAGTGAG GACGGAATCAACATCCAGCAGGAGAGGCACAGTAGGCTTACGCAGGCGGA AGTACAGGACATAGTGCGGACAGCACAGGTTGAACATGGCTTTATACAAA TGGGCCAGAAAGTCATGGCTGGCTACTTGCGGTGAGTGTTTCCTTCCTCG TGTAAGGCTATACATATCAATATGTAGAGGGACACTTATTTAGCCCTGTA TGTGAGTGGGGTATTCAGCGTGTTGGGTAGGAGG

Coding sequence (CDS) from alignment at xfSc0006006:699..1382+

>transcript:BL68730_cuf0 ID=transcript:BL68730_cuf0|Name=transcript:BL68730_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=585bp|location=Sequence derived from alignment at xfSc0006006:699..1382+ (Branchiostoma lanceolatum)
TCAGAAACCAATTTTCGTACATTCATGCGACATCTCGATGGACTCATACA
TGATGTGGAAAGAAGAAGAGAGACAACTGACCTGAATGAAATAAACGTTT
TCATCAAACGAATCTTTGTCCTCACAACAAAAGCATCAAAAATACAAAGA
GCATGCCACGATATGCCTGCCGATGATGAATTCAGATTGGCAATTTCTCA
GGTCGCCACAGAACTGCGCAGCATCCTTAGAAAATGGAACGCCAAACGGG
CCCACGCTCTACCGAAGCCGAAAAGGGGGGAAACGTTCTCTCCGGCAGAA
GAAGTGAGAGGGGAAGGACCGGGGAGGCCCCGTAAAGATATTTTGACTGA
AGATGTCTTACATGATATCATAGATTTGGATTATACAGTCACTGACGTGG
CCAAAAAGTACGGCGTGAACAGATCAACCATATATAGGCGCCTAAGTGAG
GACGGAATCAACATCCAGCAGGAGAGGCACAGTAGGCTTACGCAGGCGGA
AGTACAGGACATAGTGCGGACAGCACAGGTTGAACATGGCTTTATACAAA
TGGGCCAGAAAGTCATGGCTGGCTACTTGCGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL68730gene:BL68730Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL68730_cuf0-E1BL68730_cuf0-E1-1564476830-536134Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL68730_cuf0transcript:BL68730_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0006006genomexfSc0006006:699..1382 +
Properties
Property NameValue
Transcript idBL68730_cuf0
Biotypeprotein_coding