transcript:BL69762_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL69762_cuf0
Unique Nametranscript:BL69762_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL69762_cuf0

>transcript:BL69762_cuf0-protein ID=transcript:BL69762_cuf0-protein|Name=transcript:BL69762_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
MFYPTLHTKYNCNVIIIISINMYHASLGQVNVGYEEIEQKVSELLDMKRS
YHTTLLATWSVRMKKTKHTEYGIPKYRFLFFVLSKRLFDFGIEFGILRY
Run BLAST on NCBI

mRNA from alignment at Sc0000569:59320..60568-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL69762_cuf0 ID=transcript:BL69762_cuf0|Name=transcript:BL69762_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1249bp|location=Sequence derived from alignment at Sc0000569:59320..60568- (Branchiostoma lanceolatum)
CCAATGGCGAACACACATGCAGCTCGGACACCAAAAAAAGCAGAACTAAA
ACATTTTCCTAACAATAGTCTCTACAGCCGGTAGTAATCTTTCCTGACCT
ATACATTTACACTTACACAATAAGAGAACAGGTGCAATACTTTTATAACA
ATAACAAACAAAAAATACACAATTTGACAGCTGGGGAAAGTTGAAAAAAA
TTAATGTACACAAATATGATTTTTTGCACTGTTATGATTTTTAATTCATG
CATCTTACAGTAATTCAGTTACCGTTTACTGTACTAGAAATTTAATAACA
ACAGTGATGATGATCTTGATTAGAAATTTTGGACGTCAATAAGTGTGTCC
TAGACTCTACCTGTCTCCCCCGGTCGCTGGGAAAATAGTAGAAATTGGCC
AAATAGAGTCAAATGTTTGAAGGGAGTTGGCTACGGAGAGAGGGTCCAAT
CTGCAATCCTAGGAGCCTGCAAGTGCGACCGGGGGAGACTGGTAGAGTCT
AAGTGTGTCCTACCACTAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCC
ATAACCCAGAGGTCGGTGGATCGAAACCACCCGCTGCTACACAGGACATG
CTTCTGTTTCCCTAAATGTTTTTGTCACATTTCAAAACAGGCTAAACAAC
AAAGTTAACTGTACATGTATTAGATTTAACTTCATTTGAACTGAATTGCA
AAAATACAATACCAGGCATGCCGACAGCCATTGCTGGTGTCGCGCACCAC
ACATCACATATTACAAAACATGTTCTATCCAACACTCCATACAAAATACA
ATTGTAATGTTATTATCATAATATCGATAAATATGTATCATGCCTCTCTG
GGGCAGGTAAATGTGGGATATGAAGAAATAGAACAGAAAGTATCAGAGTT
ATTAGATATGAAGAGAAGTTATCACACAACACTACTAGCTACATGGTCTG
TAAGGATGAAGAAAACTAAGCACACAGAGTATGGTATACCGAAATATAGA
TTCTTGTTTTTTGTTCTTTCAAAACGTCTTTTTGACTTTGGAATTGAATT
TGGCATTCTTAGATATTAGTATCCATTTCCGGAAATATTTTTCACAATTT
ACAAATCATGTATTTTCTCATTTTGCAGCTGCTTTTTACGATTTGCAATA
TGGTCGAAAACTTTTGTTGTTGTTGGAAATCTACGAAAATTGATGCGCGC
GTGGATGTCATCCATATGATCATATCAATATGGCCTAGCTGGCAAGGAG

Coding sequence (CDS) from alignment at Sc0000569:59320..60568-

>transcript:BL69762_cuf0 ID=transcript:BL69762_cuf0|Name=transcript:BL69762_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=300bp|location=Sequence derived from alignment at Sc0000569:59320..60568- (Branchiostoma lanceolatum)
ATGTTCTATCCAACACTCCATACAAAATACAATTGTAATGTTATTATCAT
AATATCGATAAATATGTATCATGCCTCTCTGGGGCAGGTAAATGTGGGAT
ATGAAGAAATAGAACAGAAAGTATCAGAGTTATTAGATATGAAGAGAAGT
TATCACACAACACTACTAGCTACATGGTCTGTAAGGATGAAGAAAACTAA
GCACACAGAGTATGGTATACCGAAATATAGATTCTTGTTTTTTGTTCTTT
CAAAACGTCTTTTTGACTTTGGAATTGAATTTGGCATTCTTAGATATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL69762gene:BL69762Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL69762_cuf0-E1BL69762_cuf0-E1-1564476830-483052Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL69762_cuf0transcript:BL69762_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000569genomeSc0000569:59320..60568 -
Properties
Property NameValue
Transcript idBL69762_cuf0
Biotypeprotein_coding