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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL70060_cuf2 >transcript:BL70060_cuf2-protein ID=transcript:BL70060_cuf2-protein|Name=transcript:BL70060_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=446bp
MEELTCGPPGLCSEQTVKQLHIKEEETGETGWQQNEEQHVCQEMYSEDKE
SYAVSHVAVPTRHPGNETYSSTSGEQTTDTDWLDVLSEETYGVNCTQPEE
GVSSHLHVQACTRHVGVNNTKEQTTDTDRQQDKKRAIPNDETSGVNYTGS
AKEVLIQGHTIQEGSHVAEHTYICFKCGYRAAERKLIYEHMRNHADEKNY
KCDHCDYSTAEKYDVDQHVVVKHAGEKPYICDDDICKMNDGQHLTQHKTA
CKGEKRPFDCDHGLNSETCSEPSSQGSVNNTSSEQEKRHADNPLILRSAV
PRRHDSDKLFETLKMVFRQEKEANGVICSAVELWADTMQTNCLIEVELRK
DNGHGYHICPWPSCRYGRRGRHQVADHVRKLHIGPNFCSQCGHITKSLPA
MQRHRKRRGHDTPAPPPLFDTYQNAAVRRYCREMCSEFSVPFSEVH Run BLAST on NCBI mRNA from alignment at Sc0000380:22114..26615+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL70060_cuf2 ID=transcript:BL70060_cuf2|Name=transcript:BL70060_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4502bp|location=Sequence derived from alignment at Sc0000380:22114..26615+ (Branchiostoma lanceolatum)
CTCTTCTCTCGTGCCATTTGGGAGACCTTGAACACTGCACTGTTAAATCT
GAACCAGAGTCCAAATGTCTTGTTCATGCAAGGAGGTTAAAATAAGATGT
ATGAGTGAATCTTTTTAATTTCCTCTTCAAGTATTCAATTGCATATCTAA
CTGATGCGAGGTCATTAGATGTCTTTCATGTCTAAATACTACGAACATCA
AGCAGCATTCGGACAGTTTTGACTATGAAATATGAAAATATGAAAGATAT
TCGACATATGACTTGATTATGAGTTTTTGATACCTAGTTAAAAAATACAA
TTAGAGATTTTGAATAGCTAATGCAAAAATCTTGAGATATTCCAAAGCTG
ATATGAAAAAATCCAATCCTTTTTAAAGATTTAAAAAGTTCAATTAGAGT
TTTAAATGCGCTGTGGAATCTTCCTACGAATTATGGCCATGTGTCGGAAC
ATTTTGATTGGGGTTTCGGAACTTATATGGCATAGGGATTTTGGAACATA
TCTAGTAGGGATTTCGGAACATAGAGATTTTGGAACAAAGGGATTTCGGA
ACATAGGGATTTCGGAACATATAGGGATTTCGGAACATATAGGGATTTCG
GAACATAGGGATTTCGGAACATAGTGCTGTAATGGAGGGGCCCGGGCCCA
AAAGTTATTCGCCACTGTTGCTTAAATTCGCCACTTTGAGTTTACTTGAT
TTCTATAGCTAACATTAACTTGTTAAGCTACAATGTTAAGGTTACTTTTA
CGATCCAGCCAAGCATAAAATGTTAGTTTGATATGCATAGTGGTTAATTT
GAGGCCCCCTTCTGGGTCGGTGGACGTCTTTGACGGGGAGGGGCCAATAG
CCAATGGCCAGGGCAGTGTCTGTTGCAGGGCAGGGCTACAAGTATGAGAA
ATGCACACCCGTGAAGCTTTAATTTCAGTTATGAGTATATTACAAGATTG
AAGCTCATGTTACATGGGTTGAGTGTCACACACACCTTTACAAATTAAAG
CACTGTGCGTTAAATAATGCTTAGAACATATCTCAGGATTAGGACCGCTC
CAGTTATGGGCTAAATACTGCAAACAGTGTAACTGCCATGCACGAGGATA
CACACAGTTGTTGATTTGGATCTTAAGAATATCTACGCATATCGCGAACA
ATGTTGTTGTGTCCTCTAGGAGTAAAGTCTTGGAAGATATTTGGAATTTC
TGTGAGTGGGTTATATGAAAAGAAAGAAGAAGGAACAAAACATCCACATT
GTAGTCACATCATTTGTTTGAGAAACTGACAGGAAGTGCGGTCAAAACTC
ATTTACATAATCAATGAGGATTAGATCCATCTTACAATAAACTAGTATGT
AATTTGTGTAGAATTAGAACTTCATAGATTCTGCTAAACCTTATCCTTGC
ATAGTCAATGAAATTCTTTTAACTATAGAGATAATTGGAACGTTAGTTTT
TCCACTGGAAAAAACCTGGTGATCTCTCATAAATTTACTTACAGGCATAG
TAAAACGTGTAACTATATTGACAACATTTCTAATGTACTACTAGTAGTAA
ATCCAAACCTTTTTCATTTTTTTGTTTGTTTTATACGTAGAAAAATTTGC
CTCTTCACATCTTAAATGATCTTTTCTGTTTCTAATATTTTCTTGTCTCT
CTTAGACTAGAGATGGAGGAGTTGACATGTGGGCCTCCTGGGCTTTGCTC
AGAACAAACTGTGAAACAGTTACACATCAAAGAGGAGGAGACAGGAGAAA
CGGGATGGCAGCAGAACGAAGAACAGCACGTATGCCAGGAAATGTACAGC
GAGGACAAGGAATCGTACGCCGTAAGTCATGTAGCTGTACCAACCCGGCA
TCCTGGGAACGAGACTTACAGCAGTACTAGTGGGGAGCAGACAACAGACA
CAGACTGGCTGGATGTACTAAGTGAGGAAACGTACGGCGTAAACTGTACT
CAGCCTGAGGAGGGCGTCTCTTCACATCTGCATGTACAGGCCTGCACTCG
ACATGTGGGGGTTAACAACACGAAGGAGCAAACAACAGACACGGATCGGC
AGCAGGACAAGAAAAGGGCCATTCCAAACGATGAAACGTCCGGTGTTAAC
TATACCGGGTCCGCCAAAGAAGTCTTGATACAGGGACATACAATACAAGA
AGGCAGCCATGTGGCAGAACATACCTACATTTGCTTTAAGTGTGGTTACC
GGGCAGCAGAAAGGAAGCTCATTTATGAACATATGAGAAACCATGCTGAT
GAGAAAAACTACAAATGTGACCATTGTGACTATTCTACAGCAGAGAAATA
TGACGTAGACCAACACGTCGTGGTAAAGCACGCCGGTGAGAAGCCCTACA
TTTGTGATGATGATATATGTAAGATGAATGATGGGCAACACCTAACCCAA
CATAAAACAGCTTGTAAAGGGGAGAAGCGGCCTTTTGATTGTGACCATGG
ATTGAATTCTGAAACATGTTCAGAGCCAAGCAGTCAGGGTTCTGTGAATA
ACACATCTTCAGAACAGGAGAAAAGGCACGCTGATAATCCACTGATTCTA
CGATCGGCCGTGCCCAGACGCCATGATAGCGACAAGCTGTTTGAAACACT
GAAGATGGTTTTTCGCCAAGAAAAGGAAGCCAATGGTGTGATCTGTTCTG
CTGTGGAATTGTGGGCGGACACAATGCAGACAAATTGCCTGATTGAAGTG
GAGCTGAGAAAGGATAACGGCCATGGGTATCATATTTGCCCTTGGCCTTC
ATGTCGGTATGGGAGAAGGGGGAGGCACCAGGTTGCAGACCACGTCAGGA
AACTACACATCGGTCCAAACTTTTGTTCGCAATGTGGCCACATCACCAAG
TCACTGCCAGCTATGCAGCGCCATCGCAAGCGAAGAGGACACGACACCCC
AGCACCTCCACCGCTGTTTGACACATACCAGAATGCAGCTGTTAGAAGAT
ACTGTAGAGAAATGTGTAGCGAATTTTCTGTTCCCTTTTCTGAAGTACAT
TAGTGTTCTTCTCTTTCCTCCAATTCATAGATACATGTAAAGAATTGAGT
TCATAAGAACTGTCAGCCTTTTGCTGTTTCACAAGAACAGTTTTGCATCA
GGGGTGCTGTTAGTGTTAGCACATTATGTACATAGATACGATATGGATAA
TCTCCAAGTAGATGCGGGGTCCAGCATGTTGTTCTTTGCATACTTTTGTA
AAATCTAGTACAACACTCTAGTAGTTAACATTCTTAACACCACTCTCTTT
CTCAAAATAATCGGAGACTAAGCTGGTGTTGAAAATGTCAACTACTAGAG
TGGTGTTACAAAACATGCGTAAAACACAGACTGTGCCAGTGCACACATCT
GCTTGGATTTAGATATGGCCGGCAACCGACAAGTTATATTGCTATAGCTT
TATTGTTTTCATTTTTAGTATAGGTTTTCTGTTCATAAATGTAGCCTTTG
GATAAAGATATGGTAGCGCTGAAAGTACTATTTTGTGTTGAATTCAGTGA
AATTGGAAGTGAAGGACAAAGAAAGTCTTGTGTGAAATTTCACATCTCCT
TGGGCATTTCACAACTTTGCAAAGATAGTAGCACTGTACATTATTTGTAA
ACCGTTCACTTAAGTAGTGCTTGTATGAATCCGTTTAATACAATGAAGCT
GCACATGTACCAGGAACATGGCAGAAAATAGAATGAATAAACAAATACAA
AAAGTCATGTAGATTAGATATAGCCTGACAAAGACCATTCTTTCCTCAAT
TGGATGGCATGATATACTGTAACTTCATGTTCACTGTGTTCTCGGTCACC
TCTTCACCGTGAATTCATCATCACCGTGAAAAACCTGTTGTAATCATTCA
TAATTCCTTCACATTTCTGTTCTGTAAAATTTACTTGGCGCCACCGTGAA
GTTAACGTTCAGTGAAAATGTCCATTTTCCTTACACTGAAATTTTGCCTC
CGTGAAGATAAAGTTAATTACAGTGTAGTGTGCCTATGGTAATTGGAAAA
AGACATGCTTGCATTTGTAGATTCACAAAAAGGGTTTCAAAATTCAATTT
TGGTCTCCCAGCAATCAACGTCTAATGAAAAGGGGTCATATGAAGGGTGT
GCTAGATATCCAATCTATCCTAGGACAATCCCAGATTCTCCTAGCCTGAC
AAAAAACATATGGAAATTCTGTGCCCTTAATGAGTTAATTAGTTATCCCT
GAAGGTACCCCCTTCTGTATATTAATAATAACTCACTCCAAGGAGGTTTT
CTCACTCTAATCCACCCTTAGAGGTATTTGGGATCTTATCTGATTTTGTG
TGATTCTGATAACGTAGGGTCAGAGATTGTAAAGTAGAATCATGAAGGAA
GATTATATTCAGTTAGTAACTTAATTATTGATACTACTGACACAATAAAC
TGTGGCCAAAATTCATATCGAACCCGGCTTGGTGTGTTGCCTTGGGACCA
ATACAGACTATAGTGAAAGAGACATAGGCAATCCCTCCCAACTGACATGT
AG Coding sequence (CDS) from alignment at Sc0000380:22114..26615+ >transcript:BL70060_cuf2 ID=transcript:BL70060_cuf2|Name=transcript:BL70060_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1341bp|location=Sequence derived from alignment at Sc0000380:22114..26615+ (Branchiostoma lanceolatum)
ATGGAGGAGTTGACATGTGGGCCTCCTGGGCTTTGCTCAGAACAAACTGT
GAAACAGTTACACATCAAAGAGGAGGAGACAGGAGAAACGGGATGGCAGC
AGAACGAAGAACAGCACGTATGCCAGGAAATGTACAGCGAGGACAAGGAA
TCGTACGCCGTAAGTCATGTAGCTGTACCAACCCGGCATCCTGGGAACGA
GACTTACAGCAGTACTAGTGGGGAGCAGACAACAGACACAGACTGGCTGG
ATGTACTAAGTGAGGAAACGTACGGCGTAAACTGTACTCAGCCTGAGGAG
GGCGTCTCTTCACATCTGCATGTACAGGCCTGCACTCGACATGTGGGGGT
TAACAACACGAAGGAGCAAACAACAGACACGGATCGGCAGCAGGACAAGA
AAAGGGCCATTCCAAACGATGAAACGTCCGGTGTTAACTATACCGGGTCC
GCCAAAGAAGTCTTGATACAGGGACATACAATACAAGAAGGCAGCCATGT
GGCAGAACATACCTACATTTGCTTTAAGTGTGGTTACCGGGCAGCAGAAA
GGAAGCTCATTTATGAACATATGAGAAACCATGCTGATGAGAAAAACTAC
AAATGTGACCATTGTGACTATTCTACAGCAGAGAAATATGACGTAGACCA
ACACGTCGTGGTAAAGCACGCCGGTGAGAAGCCCTACATTTGTGATGATG
ATATATGTAAGATGAATGATGGGCAACACCTAACCCAACATAAAACAGCT
TGTAAAGGGGAGAAGCGGCCTTTTGATTGTGACCATGGATTGAATTCTGA
AACATGTTCAGAGCCAAGCAGTCAGGGTTCTGTGAATAACACATCTTCAG
AACAGGAGAAAAGGCACGCTGATAATCCACTGATTCTACGATCGGCCGTG
CCCAGACGCCATGATAGCGACAAGCTGTTTGAAACACTGAAGATGGTTTT
TCGCCAAGAAAAGGAAGCCAATGGTGTGATCTGTTCTGCTGTGGAATTGT
GGGCGGACACAATGCAGACAAATTGCCTGATTGAAGTGGAGCTGAGAAAG
GATAACGGCCATGGGTATCATATTTGCCCTTGGCCTTCATGTCGGTATGG
GAGAAGGGGGAGGCACCAGGTTGCAGACCACGTCAGGAAACTACACATCG
GTCCAAACTTTTGTTCGCAATGTGGCCACATCACCAAGTCACTGCCAGCT
ATGCAGCGCCATCGCAAGCGAAGAGGACACGACACCCCAGCACCTCCACC
GCTGTTTGACACATACCAGAATGCAGCTGTTAGAAGATACTGTAGAGAAA
TGTGTAGCGAATTTTCTGTTCCCTTTTCTGAAGTACATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000380 | genome | Sc0000380:22114..26615 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL70060_cuf2 |
| Biotype | protein_coding |
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