transcript:BL70102_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL70102_cuf0
Unique Nametranscript:BL70102_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL70102_cuf0

>transcript:BL70102_cuf0-protein ID=transcript:BL70102_cuf0-protein|Name=transcript:BL70102_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=149bp
VSIRQKYRKIPVRIRQDRWHFRAVYGSVFVENTLLSDSSGNIPYPSAHLV
GSVRLDPPVSVSIRQKYRKIPVRIRQDRWHFRAVYGSVFVENTLLSDSSG
NIPYTGAEIVGYLTRIRLYPSVSVSIRQKYRKIPVRIRRETRPFRAVLA
Run BLAST on NCBI

mRNA from alignment at Sc0001476:1385..1832+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL70102_cuf0 ID=transcript:BL70102_cuf0|Name=transcript:BL70102_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=448bp|location=Sequence derived from alignment at Sc0001476:1385..1832+ (Branchiostoma lanceolatum)
CGTCAGTATCCGCCAAAAATACAGAAAAATTCCTGTTCGTATCCGTCAGG
ATCGGTGGCATTTCCGTGCAGTGTACGGCTCCGTATTCGTCGAAAATACC
TTACTTTCGGATTCTTCCGGAAATATTCCATATCCCAGTGCGCATTTAGT
CGGATCCGTCAGGTTGGATCCGCCTGTATCCGTCAGTATCCGCCAAAAAT
ACAGAAAAATTCCTGTTCGTATCCGTCAGGATCGGTGGCATTTCCGTGCA
GTGTACGGCTCCGTATTCGTCGAAAATACCTTACTTTCGGATTCTTCCGG
AAATATTCCATATACCGGTGCGGAAATAGTCGGATACCTTACACGAATCC
GCCTGTATCCGTCAGTATCCGTCAGTATCCGACAAAAATACAGAAAAATA
CCGGTACGTATACGCCGGGAAACGAGGCCATTTCGTGCAGTGCTAGCT

Coding sequence (CDS) from alignment at Sc0001476:1385..1832+

>transcript:BL70102_cuf0 ID=transcript:BL70102_cuf0|Name=transcript:BL70102_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=447bp|location=Sequence derived from alignment at Sc0001476:1385..1832+ (Branchiostoma lanceolatum)
GTCAGTATCCGCCAAAAATACAGAAAAATTCCTGTTCGTATCCGTCAGGA
TCGGTGGCATTTCCGTGCAGTGTACGGCTCCGTATTCGTCGAAAATACCT
TACTTTCGGATTCTTCCGGAAATATTCCATATCCCAGTGCGCATTTAGTC
GGATCCGTCAGGTTGGATCCGCCTGTATCCGTCAGTATCCGCCAAAAATA
CAGAAAAATTCCTGTTCGTATCCGTCAGGATCGGTGGCATTTCCGTGCAG
TGTACGGCTCCGTATTCGTCGAAAATACCTTACTTTCGGATTCTTCCGGA
AATATTCCATATACCGGTGCGGAAATAGTCGGATACCTTACACGAATCCG
CCTGTATCCGTCAGTATCCGTCAGTATCCGACAAAAATACAGAAAAATAC
CGGTACGTATACGCCGGGAAACGAGGCCATTTCGTGCAGTGCTAGCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL70102gene:BL70102Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL70102_cuf0-E1BL70102_cuf0-E1-1564476830-509163Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL70102_cuf0transcript:BL70102_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0001476genomeSc0001476:1385..1832 +
Properties
Property NameValue
Transcript idBL70102_cuf0
Biotypeprotein_coding