transcript:BL70283_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL70283_cuf0
Unique Nametranscript:BL70283_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL70283_cuf0

>transcript:BL70283_cuf0-protein ID=transcript:BL70283_cuf0-protein|Name=transcript:BL70283_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=123bp
CCLWFYLAPGEGFEFPKPLRRQKFADKESLARGTCCRRFVYLGYFTSSSM
VXSLARGTCCRRFVYLGYFTSSSMGEHFIINYTDAFHPLQKGFKVINSLF
VCSLYSKNFFDEIGLHIVLFNIE
Run BLAST on NCBI

mRNA from alignment at Sc0000019:1966739..1967623-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL70283_cuf0 ID=transcript:BL70283_cuf0|Name=transcript:BL70283_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=885bp|location=Sequence derived from alignment at Sc0000019:1966739..1967623- (Branchiostoma lanceolatum)
AATGTTGCCTATGGTTTTATTTGGCCCCTGGTGAGGGTTTTGAATTTCCA
AAACCGCTAAGACGCCAGAAATTTGCAGACAAAGAGTCTCTTGCGCGCGG
TACATGTTGCCGACGCTTTGTTTACTTGGGTTACTTCACTAGTAGTAGCA
TGGTCGANTCTCTTGCGCGCGGTACATGTTGCCGACGCTTTGTTTACTTG
GGTTACTTCACTAGTAGTAGCATGGGCGAGCACTTTATTATAAATTATAC
GGACGCCTTTCATCCTCTACAAAAAGGTTTTAAAGTCATCAATTCTTTGT
TTGTGTGTTCTCTTTATTCAAAGAACTTCTTTGACGAAATAGGTTTACAT
ATTGTACTATTTAATATAGAGTAAAATCATACCCCACACCTACATTACAG
TAGACTATCCCAATGACCCTATGACCTCAAGCACCATTTTGTTTTTCCCA
CACCGTCAAGGAATCCAACCCAAACAGGCTGATTTTACCGTGATATTCCG
CAATTTTTTCCCGATAAATAATGTCACCGCGCAATTGAAAATGACACGGT
TGTCTTCGGCAACATTTTAAGTCGCATGTGCTCCGGTTTGGGGGCGGATC
TATGGATCGACTTGGACTTAAATAATATGCTTGTGGAAAAATCGAGACCG
ACCGAAATCAGTCATCTTCAAGATCTTGAGCCGATCGTCGTCTTGTGGAA
GTGGTCGGTAGACCAAGTTTGACTGTACACTGTACATGTATAGTATGTGA
ATAAATGTTTCTCAGTGTGGCACTTATTGCTCGTGGTCAAAATCAACCGT
TTCTATAGAGCGGCCACCTGTCCATAGCGGTCGATTTTGGCCAGTCCCTT
GAGTGACCGCTATAGGCAGGTTTGACTGTACTTTA

Coding sequence (CDS) from alignment at Sc0000019:1966739..1967623-

>transcript:BL70283_cuf0 ID=transcript:BL70283_cuf0|Name=transcript:BL70283_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=372bp|location=Sequence derived from alignment at Sc0000019:1966739..1967623- (Branchiostoma lanceolatum)
TGTTGCCTATGGTTTTATTTGGCCCCTGGTGAGGGTTTTGAATTTCCAAA
ACCGCTAAGACGCCAGAAATTTGCAGACAAAGAGTCTCTTGCGCGCGGTA
CATGTTGCCGACGCTTTGTTTACTTGGGTTACTTCACTAGTAGTAGCATG
GTCGANTCTCTTGCGCGCGGTACATGTTGCCGACGCTTTGTTTACTTGGG
TTACTTCACTAGTAGTAGCATGGGCGAGCACTTTATTATAAATTATACGG
ACGCCTTTCATCCTCTACAAAAAGGTTTTAAAGTCATCAATTCTTTGTTT
GTGTGTTCTCTTTATTCAAAGAACTTCTTTGACGAAATAGGTTTACATAT
TGTACTATTTAATATAGAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL70283gene:BL70283Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL70283_cuf0-E1BL70283_cuf0-E1-1564476830-141826Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL70283_cuf0transcript:BL70283_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000019genomeSc0000019:1966739..1967623 -
Properties
Property NameValue
Transcript idBL70283_cuf0
Biotypeprotein_coding