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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL71619_cuf0 >transcript:BL71619_cuf0-protein ID=transcript:BL71619_cuf0-protein|Name=transcript:BL71619_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=467bp
MTLDVANMQEDDTEGPVHAQPLGSFRKKWREADENMKTVVSTMEQKLGTA ERAGNAADIIEFEKYVSESKKSWCTVEDHLGRGIVHTVVESGNVNLLRNL VAAGVDFDSEEGCGATPLCLTVIKHDDQMVMCLLETQAVRVDGVTFLHFP SLIALARRMGHNDTMDILERSRAPSVEDVNLYMQFVNENEPGISDDVDNM IAQIEQVQVEEEVYKFHRKNAPNVTIGDGLTNRNHLHCRLSDEVSFGWTG EMPGDLHASGYMEECFAKSQGPGGLYHITTNVLQRKKVKQETYGKDKFKE NNLQLIREANRDVGYGYGLCAVVEFRDSDSFPSDEELLNCGTDKGPLLLS RFKEWLKKCSEDDVDFGYRAQSVTLFGPLTRLLYSSIKNGDGAARETVWM LLLPIFSQSKRKNYWIEALAHTVNVTAAWPIAIKMMVRQNCSVSVDGRKG HNIACDEFVETHMVKPL Run BLAST on NCBI mRNA from alignment at Sc0000954:4899..13748+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL71619_cuf0 ID=transcript:BL71619_cuf0|Name=transcript:BL71619_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=8850bp|location=Sequence derived from alignment at Sc0000954:4899..13748+ (Branchiostoma lanceolatum) CTGGGACCGAGAAGAGGGGGGACTAACCGCGCGCCAATCAGGGAACTGCT
TGCGCAAAGTAACCTGGATACGCGATGGTAGCTGTTTATATCGACGCTGC
CAGATTTGACTGCGCGAGAGTCCCGATTTTTGCGCGAGAGTACACCAGTT
TTGAGGGAAGTTTTTTACATGTTATCGATATCCCAGTGCTTCGAAAATCT
ATATGTACTTTCTTTGGTACCTAAAGTCTTTAGAACAAGGAACAGATATG
TCGAGATAAAATTGGATGGTTAGACATATCAGCTGCAAGAAAGAGGTTTG
AATTCAAAGAAAGCCTAAAACAGCACAGGATTGATCAAGCCGCCCTGCTC
AACACAATTGAAAGTTATCCTTGGGAGGAGGCAGAAGAAGACATGACTTT
AGATGTAGCAAACATGCAAGAAGATGACACGGAAGGACCTGTTCATGCAC
AGCCCCTCGGCTCATTCCGAAAAAAGTGGAGGGAGGCCGATGAAAATATG
AAAACTGTTGTGTCCACTATGGAGCAGAAGCTGGGAACAGCAGAGAGGGC
TGGAAATGCAGCAGACATTATCGAGTTTGAAAAATATGTTTCTGAGTCCA
AAAAAAGTTGGTGTACAGTAGAAGATCACCTAGGTCGCGGTATTGTACAC
ACAGTAGTGGAATCAGGAAATGTGAACCTTTTGCGAAATCTTGTAGCTGC
AGGGGTTGATTTTGATTCCGAGGAAGGCTGTGGCGCTACTCCACTATGCC
TTACCGTCATAAAACACGACGATCAAATGGTTATGTGTTTGCTAGAGACA
CAGGCAGTCCGTGTGGATGGAGTGACCTTTTTGCATTTCCCTTCCCTAAT
AGCCCTGGCCAGGAGAATGGGACACAATGACACAATGGATATTCTAGAAC
GGTCACGTGCCCCCTCTGTAGAAGATGTGAACTTGTATATGCAATTTGTA
AATGAAAATGAACCAGGGATCAGTGATGATGTAGATAACATGATAGCCCA
GATTGAACAAGTACAAGTTGAAGAGGAAGTGTACAAATTTCACAGGAAAA
ATGCACCTAATGTAACTATTGGTGATGGGCTAACCAATAGAAACCACCTG
CATTGTAGACTTAGTGACGAGGTTTCATTTGGATGGACAGGCGAGATGCC
AGGTGATCTTCATGCATCAGGGTACATGGAGGAATGTTTTGCTAAATCAC
AGGGGCCTGGAGGACTGTATCACATAACCACTAATGTACTCCAGAGGAAA
AAGGTGAAGCAGGAGACGTACGGAAAGGACAAGTTCAAAGAAAACAATCT
CCAGTTAATTAGAGAAGCTAATCGCGACGTGGGGTACGGATATGGGCTTT
GTGCTGTGGTCGAGTTCAGGGATTCAGACTCATTTCCCTCAGATGAAGAG
TTGCTGAACTGCGGGACAGATAAGGGACCACTTCTTTTATCCAGGTTCAA
GGAATGGCTCAAAAAGTGTAGTGAAGATGATGTCGATTTCGGCTACAGGG
CTCAAAGTGTCACTCTGTTTGGTCCTCTGACAAGACTGCTGTACAGTTCA
ATCAAGAATGGAGATGGTGCTGCCAGAGAAACGGTGTGGATGCTGCTGCT
TCCAATATTCTCACAATCCAAGAGGAAGAATTATTGGATTGAGGCCTTGG
CTCATACAGTTAACGTGACAGCAGCATGGCCAATTGCGATCAAAATGATG
GTTCGCCAGAACTGTTCCGTTAGTGTGGATGGACGGAAAGGCCACAACAT
TGCCTGTGACGAGTTTGTAGAGACACACATGGTTAAACCTTTATAACAGT
ACTGTTCTGGCCAGACAACCCTTAAGACACTCCAGAGACTGAATGTTAAT
CTTCAGCTGATTGGAAGTGCCAGAGCAAGTTACAAGTCTAGAAGTGGCTT
TGACATCCACAATACTAAGCGCCACAGTGAGCCATCACCTCTAAGGTACT
CTCCAAGCAGAGCTAGGGTTTCGGCTGGTTTTTAACGTGTTTTAGGCGTT
TTTGTCATGCCTTCTACTTTGTCATCGTTTTTGTTGTGTCGCAAACCCAA
GCTCTGCAGGCACTGACCTCGGGGCGGGGCAAACCTATTTACTTCCATTG
AAAAAAAGGTGACAGTACTCCTCCCTGAGAACCATTAGATAATCATTAGT
GGTAACAATTTTACTGCCCCGGATTATCACACATCCGGCAAGTGTAGAAC
GGCATTCACCAGGCCGCGCCGGTCCCCCGCTGACTGCCCTATTCATGCGA
CAGGCTGGTGTCCACGATCTCACGCCGGCATGATCATTGATAGCATCATA
ACGTACATTTCAATTGGAAACCTTAAGAAAAAAATACAATGATGCATGAA
CAAGACATATAAAATAAATATGTATTACGTATTAACTTGAACTGCATTAC
TAGTAATTATTATAATCATTATCTCAGGCATCGTTAAATGGATTATGAAC
GGGAACACGCGCCTTGTTTACGTTACATGCGGTTACCAATGCCGCCGCTC
GCTGTGTTCAGATTGGACGGAACTTTTCAACAACAGCAACGAAATTGGCG
ACGGAGTGCTACCAACAGAGACTAAAAAATCCCCACGACACCAGAGGATT
GTACAAATTTTTGTGTGCTTTGTTCTTTGATGGTTTTAAGATGGTGTAAA
TGAAGTGCGGTCACGATAGGCAAGTCATTTGCTGACGGACATGAAGCGAC
TTTCCAACATGGCGTCCTGATTCGGTTTTGTATGTAACGTTATTTGTGGG
TAGTAGTTTAGAGACTTTTTGAGATTCAACGATATCCTCCCACTACAGCA
TGGCATTTCCGCAGTGGGGATTAAAAATGAGAGAATCTATGGCTATTTCG
GGCTGTACATCGTCTTCTGGTACGACGGCCCAAATGGCCTGGATCGTAGT
TGAGTATCGTGGAGACTTTGTAAACTCCAGATGTCTTTGGTTGCACGTTG
AGCTATTATTTTCATACGAAAGTAATTGCAGTTAGCCAAGGAGTAGGGGA
AGCGTAAGAACATGGCATGAAAACATGGCCACGACCGATAGACCGAGGAT
TATGTCCATGGTGAGACTGGGCCGGAAATTCTGTGGCGCGTGGGGAGGGA
ATCCCGTGCCTGGCCGGGCACGCTTCGCACTAACTTGTGAAACGCTTGTT
ATGTGTTGGAGTGATTAAGTTTATTAGGCATTGAAGCTTCCGTCTGCCTG
CAGAGCTTGGGTTTGCGACACAACAAAAACGATGACAAAGTAGAAGGCAT
GACAAAAACGCCTAAAAACACGTTAAAAACCAGCCGAAACCCTAGCTCTG
CTTGGAGANTGCTTGGAGAGTACTCTAAGGGACCAGGTGTTGGTATGCTT
GTTTTGTTTACAGGAACAGTTTTTCAAATACGACAAGGAGCGCAGAAAGC
AAAAGGTCTACCCCCTCTCTCAGTCTGGAAGTCAGAAATTTGTCCCAAAT
GATCGCTGTAATGTGTATATGAAGGGCTGTGACAAAGTCAGGTCAAACTT
TGACAGAATCTTTCCACAGAGGAGGCGAGTACCTTCTGTGTTCAGGGCAA
ATGTTCCAACAGATTAGTTTTCTACTGTGTTGAAATGCAAAGTTTCAGAT
AACTATCAAAATGTGATATGCCTCTCTGTATTATACCTGATCTGAGGTCA
AAATTACTATTCATTCGGCTATTCCAAGATCAGGGTGCGCCAATAGCATC
TTTCATCGTTATCGTATTCTTAGGTTGCTTTTATCACATCCTGTTGGTAT
TTTTTCATCTTATTATCCAAATACAGTCATTTTCCAGACAATCCTGCAGT
TTGTTGGAAAATAAATGTTCAAAACATTATGCTGTGACCAATTTAATGCC
CAAAATTGGCCTAAAATATGCGTTATATCGGTGCACTTTAATAATGCAAT
TTTTGAAATCAGCATTTAACTATCTTGTGATGAAAAAAAAATAACTAAGA
ACTGAGTTTTATGATAAGACTAGCCCAATCTTATATGTTGTGCAAAAAAC
TAGAGGATAATTGGACATTTTTTCTTTCCATGAGCACAATTTCAATATGT
ATTGAACGTTATGAAAAATGCTGTTTTTTACACATTATACTAAAAAATAT
CCTTGCAGTAAAAAAATGGTGATGGAACTGGCCATTTTGCATGTTACTCA
GTTGGTATAGCCATATGTAACATAAAGATGTGTTTTTGTCCTGCTTGCAC
TTTGGGATACTATGGCAGATGGATTACAGTTGCCTCTAGTTGTTGTCCGA
AAAAATGCGTAGTGTCCGTATACTGGTAAAAGAGGTTTATCAAAAAGAAT
ATGAAAGCTATTGGTGCAGGTGAACTATATGATCTGAAACATCTTATGGT
GGTGGCCTTATTACCAAAGCCACTTAGCACTGTCATTGTATAAACATGAA
ATAATGTCAAAAATTGCCCAGCTGTAGTGTCCGTTTACCACGTGTAGTGT
CCGTATACCATATTCCATGTTAGTACCATACATGATTCCAATTTCACTTT
TGTTGCATTTTAAAGGCTTTTGTCCCAAATCTTATTTGTTATCCTACACA
ACAGTACAAGTTGAACCTTTCTTTCACGCAAGCTCGAATTCTCGTCAGAT
TTGGTGAGATTTTGCGTGATTTGGACTTCCCAGATGGTGGATCAATGCCA
AAGTTTTTCTTGTTGTTGAAACTTTCCACCAAGTGATACCATCTGACTAA
AGACAATATGAAGGACAAGAATATTGGTATAAAGCACCTGTAATATTTGT
GTGAACCTGAATATCTTATAGCATCTCTTTCACTCAAGCTTCAAGTCTCG
TGAGATTTGGTGAAATTTTATGTGATTTGGATTTCTGTGAAAAAGACCTT
GCCTGATATAGCACAATAAACCCGAAATGTCCCGTCCGTACCCCCAACCT
GTCCCATCCATACCCCCACTTTTAGTGTTTAGCAAAAAACTGTGGAAAAT
GGCGTTCCAATTGCTAAAAAGACATTAACTAAAGACTTAAAAGACACAAA
CAGTTGCTCTCCTCAGTAAAAACAGTAGTTTCTGATGAATTTATCAACAT
TTTCCTTCACAGATTTTTTCATTAGCCTACATCTGATTATCCAGTTCTCA
CCAACTTTAGAGAGCAGTTCCGGTGCTCTTAAGTTATTGAAAAGTAGAGT
ACATTATGTAAAACATGCATACAAGTTTAAGTAGTGTTATTGCTTTAAAA
ATTAGAATTCTTTTGGTGGGAAGATGGCTGCTAATAATTCCATTTAAACT
ACATTTTTTATCTTGCAGACCACCCACCAAGCAACCCCCAGTTTCTTTTA
TTACTAGTTTTAGCAAACTCAAATACTAGTATGTACACGTTTTGGTATAA
GATGTTATGTTATTGTTACCAATGATATTTAGAAAATATAAGCAGTAATT
AGAATCCTTTACATACCAATGACATTAAAGGAAAATACTTGTATATTGTA
AAGCCATATAGGTAGAGCTGTTCATGCTGCAATGTAAATACTAGTAATGT
CCAGCTCACTTTTTCTTAATTTAGACACTATTACAGTATTTGCATATGAT
TTACTCAACTTATATTAGTGAATAAATGTGTTTTAAAAGGTTTGAATAAG
TTCCTGCAGACAATATTTGTACCTGTTGTGTCCCGTTCGTACCCCCAAAT
ACATGTACAATCATGTTCATATAATGATCATACAAAAGTTCCTTGATGTG
CTTCCCATGTATAAAAGCTAGAATCTTATGTGGAAGTATATACAGAATGA
AATACTATCATAGTTTAGCTATCAAAGTGCCTGAACTTTAAAATTTTGTA
TTTGACCGTTCCCCCCACATAAGATGAAAGCAAGACGTTATCATCGCTTA
ACAATAAATGACCATGAAATGTTGCCACAAGGTGTCACTGCAAATCAAAG
TCAGTTTCCTGTTGTTGCGGACACAAGAAATGGAAAATAATAAGGAATGG
TATTCATCTTGTGTTCTTCGTTTAGGTATACTGTAAGTAACTTTACTTAC
AGTCTTGCAGTCTGTCCGTACCCCCTTAGTGACCCATTACAAAGAAGACC
TGTATCACTGTAACCAAGAGGCGTTGTGCAGAGATCTTTGAATACTAAGC
CCAAAGTATGTACCTTTGAACTGCCAACATCAATTTTGAAATATATTTAA
ATTGATTTTAGAGCCTCAGTGACACATGTTTGGAAACAGCCGTACAGAAC
TAAACTACGCACAAAAAGTTCGGAAACTTAACTTTGGTTGATCATATCTC
CGTTGTTTTTTTACCGATTTTGATCCATTATATATCATTATAAAGCTTGT
CTGATTCCCTTTCTATGATAACAAACGTATTGTGATTGAAAACCCACGGA
ACAAGTACCAGGACTAATAACGTGAGTGGGTCACAGAGAAAAAGTGCCCA
AAATTCCCTGTTGGTGTCATACGAGCGCTGTGACATCCTATTGGTCTGGG
CGCGGATGATGATTCAATATATTGTTTCCTCAGGTTCTAAGGTTATTTTT
AGAACACAGACCATCCAAGGTTATTTCTAGCACACAGAACATCCAAGTTT
ATTTTTAGCTAATCGAAGATCCAATTGTTTACACCACAACATTTGGTGGT
GGCAGCGTCATGGTATGGGGAGGCATTACCTCCAGGGGAAAGACAAGATT
TGTCATTGTACCAGGAACCCTCAATGCAGAAAGATATCGTGACACAGTAC
TTGATCCAGTGGCCATCTCTTTCCTTCATAACATGGGGCCGACTGCCTTG
CTGCAATATGATAACGCCCGCCCACACCGGGAGGGATAATCGCAGACCAT
CTTCAGCATGCAGGTGTAGAGAGGATGGAGTGGCCCTCTAAGAGCCCGGA
CCTGGACCCAGCGAACATCTATGGGATCAGCTTGGGCGAGCTGTCCGTGC
AAGAGTGACCGAGAGAACAACGCTAGCTGACCTAGGACGACTGCTGGTGG
AGGAATTGGACGCTATCCCACAGCATCGCATTGCGCGACTGGTGACGAGT
ATGAGGAGGAGGTGCCGTGCTGTAGTGACAGCGCGTGGCTGGGCCACCCG
TTCCTAAGACTCCTTGCTAACCTGTTACTAAGACACAGATTGTTGGTTCA
GTGATAAAGAATTTAGCTTTCATGAATATGTCTTGTTTATTCTTGTTGAT
TTTTCACAATACCCTCGTACAGAAGTCAATATCAACAGAAGAATATGTAC
GGAATAGCATGTTTGACTATAGTAAGGTAATCTGGGCAATTTATTTCTTC
GACCCACTCACTTTAGCAGGCCTGATGCTCGTTTCATGAACTCGCAATCA
CAATAAGTTTGGTATCATGGGAAAGGAAATCAAATAAGCTTTTAAATGAT
ATGTAATACATTGAAATCGGTAAAAAAATAACGGAAATATGATCGACCAA
AGTTAAGTTTCCGAACTTTTTGTGCGTAGTTTATAAGTTTTTAATTTTAG
TTAAAATATCCCCAAATCATATATCATACCGTAATATTTTAAAATCAATA
TTAAGTAAAGGTCTTGAACACAGCCCAGAACTACCCCAGTCCAAGTTTCA
GGTCATTTGGCCTTCATATGATTATATAGGAGCCAGAAATGTATAGTACA
ATTTCTGAAAACAGGCCTTCTAGTATTACTGATATTCTGTAGTGTCCGTA
TACCTTAGAGTTCATTAGTTATTAGCTTACATCACAGCTCCTTAGCAGCG
CAGTTACTTGTAATAAGGTTTTCCTAAAACTTTTGGATAAACTTTTGTAA
CAAACAGAAGACATTAATAGGATGCTCTTCATTAATTGATTCATTAATAG
AATAACACTCATGTTATGTTACATTTTTCAACTTGCCATTTTTTTTTACC
AAACATTGAAGATAAGTGCATATTGTTTAGGAAACTAAGTCAACCCAAAA
TACTTCTTAAAATCAAGGCAGTACAATAGGGAAAACATTGTTTATAGTTA
TGTTGCAAGTTGATAATTCAATCTTTGAAAGACACAAGAAATGTTATTGA
ACGTACTTGGGCTGTAGTGTCCGTATACTGCCAAAATTTGAAGTGAACAT
GCAAGATTAAAAGTGTATAACTCCAGAACCGCTTGTCGTTATCGAAAAAT
TTAAAAAGTTCCTTGTTAGGGATGACTTGTAGTACAATATTCTGTACTGA
CAGCGGAAAATATGAAACTTGAAATTTGGGCCCAAGTGCACCACCCTGGC
GCACCCTGATCTTGGAATAGCCGATTGCTAACGTTTCCATTACTTTCTAA
AGGCATAACAGAAAATTGGTATGTCAAGCTTCGGCAGTTTCTGTAGTGAT
TGAAATTGCCTGACGTGACAATGACATGGTGTAGTACATGTGCTATGCTA
ACTTCAGGTTATTTTTGGTGAATAGTCACAGTGGAGTTATAGGTAGAGTT
GAACATGTGTGAGAAGTGCAAGAGAGTAGGGACACGTCTACTCTTGTCCC
TACTTTGTCTCACTGTACTTGATGAATTTTCATACTTGTCTTAAGAGTCC
ACTCTCTATGAGATGTTCCTTTATATATATATACTAGCTGTACAAATTTA
TCTAGTCCATCTTAAGACAACTTTGTGGCCTAAACAGCTGTGATAACTGC
ATACACTTTTGAAAAACAAATGATATAATTTCATGCTGCACTTCATATGC
ATGTAAATGATTATATATCTACACATTTCACTTATATTTGCAAGCTTTAT
GGCAGTCCTTTGTTGCATGATATGGAGGATTTTTGAGAGTTTTTATTTCA
TTTTGAGTTGTACTTTACAAGGGTGTAAATAAATGATGTGTATAGTTTAC
CTTTAGTTGTCCTTTGTGGTGTATTGGTTCACAGATTACTAACAATGGAG
Coding sequence (CDS) from alignment at Sc0000954:4899..13748+ >transcript:BL71619_cuf0 ID=transcript:BL71619_cuf0|Name=transcript:BL71619_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1404bp|location=Sequence derived from alignment at Sc0000954:4899..13748+ (Branchiostoma lanceolatum) ATGACTTTAGATGTAGCAAACATGCAAGAAGATGACACGGAAGGACCTGT TCATGCACAGCCCCTCGGCTCATTCCGAAAAAAGTGGAGGGAGGCCGATG AAAATATGAAAACTGTTGTGTCCACTATGGAGCAGAAGCTGGGAACAGCA GAGAGGGCTGGAAATGCAGCAGACATTATCGAGTTTGAAAAATATGTTTC TGAGTCCAAAAAAAGTTGGTGTACAGTAGAAGATCACCTAGGTCGCGGTA TTGTACACACAGTAGTGGAATCAGGAAATGTGAACCTTTTGCGAAATCTT GTAGCTGCAGGGGTTGATTTTGATTCCGAGGAAGGCTGTGGCGCTACTCC ACTATGCCTTACCGTCATAAAACACGACGATCAAATGGTTATGTGTTTGC TAGAGACACAGGCAGTCCGTGTGGATGGAGTGACCTTTTTGCATTTCCCT TCCCTAATAGCCCTGGCCAGGAGAATGGGACACAATGACACAATGGATAT TCTAGAACGGTCACGTGCCCCCTCTGTAGAAGATGTGAACTTGTATATGC AATTTGTAAATGAAAATGAACCAGGGATCAGTGATGATGTAGATAACATG ATAGCCCAGATTGAACAAGTACAAGTTGAAGAGGAAGTGTACAAATTTCA CAGGAAAAATGCACCTAATGTAACTATTGGTGATGGGCTAACCAATAGAA ACCACCTGCATTGTAGACTTAGTGACGAGGTTTCATTTGGATGGACAGGC GAGATGCCAGGTGATCTTCATGCATCAGGGTACATGGAGGAATGTTTTGC TAAATCACAGGGGCCTGGAGGACTGTATCACATAACCACTAATGTACTCC AGAGGAAAAAGGTGAAGCAGGAGACGTACGGAAAGGACAAGTTCAAAGAA AACAATCTCCAGTTAATTAGAGAAGCTAATCGCGACGTGGGGTACGGATA TGGGCTTTGTGCTGTGGTCGAGTTCAGGGATTCAGACTCATTTCCCTCAG ATGAAGAGTTGCTGAACTGCGGGACAGATAAGGGACCACTTCTTTTATCC AGGTTCAAGGAATGGCTCAAAAAGTGTAGTGAAGATGATGTCGATTTCGG CTACAGGGCTCAAAGTGTCACTCTGTTTGGTCCTCTGACAAGACTGCTGT ACAGTTCAATCAAGAATGGAGATGGTGCTGCCAGAGAAACGGTGTGGATG CTGCTGCTTCCAATATTCTCACAATCCAAGAGGAAGAATTATTGGATTGA GGCCTTGGCTCATACAGTTAACGTGACAGCAGCATGGCCAATTGCGATCA AAATGATGGTTCGCCAGAACTGTTCCGTTAGTGTGGATGGACGGAAAGGC CACAACATTGCCTGTGACGAGTTTGTAGAGACACACATGGTTAAACCTTT ATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000954 | genome | Sc0000954:4899..13748 + |
Properties
Property Name | Value |
Transcript id | BL71619_cuf0 |
Biotype | protein_coding |
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