transcript:BL71697_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL71697_cuf0
Unique Nametranscript:BL71697_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL71697_cuf0

>transcript:BL71697_cuf0-protein ID=transcript:BL71697_cuf0-protein|Name=transcript:BL71697_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=394bp
FVKVEINPGSRLDMAEAGNGSLTAVSKSFCDGSPTGVSLHRNANNIEDQP
EAQTDEKPYMCGESGYRSAKTCGLTGHRRIHMGKKSYKCDQCAYSAADKS
ALDSHLAIHMGEKPYMCEKCGYMTANKIDLLRHMRTHTGEKPFKCDHCDY
SAAQKSALKRHLARHSGQKPYMCGECGYRSADRSNLSRHMRTHTGEKPYK
CDQCDYSAAQKSHLNEHLAKHTGEKPYMCDDCGYRTDDKGSLSKHIRTHT
GEKPFKCDQCDYSAARKSTLDSHLAKHTGEKPYICGECGYRAAQKRNLSE
HMRTHTGEKPYKCDQCDYSARQKSTLDSHLAKHSGEKPYMCGECGYRSAD
RSNLSRHMRTHTGEKPYKCDQCDYSAAQKYHLNRHLAKHTGEKS
Run BLAST on NCBI

mRNA from alignment at Sc0000655:45914..48254-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL71697_cuf0 ID=transcript:BL71697_cuf0|Name=transcript:BL71697_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2341bp|location=Sequence derived from alignment at Sc0000655:45914..48254- (Branchiostoma lanceolatum)
GATTTGTGAAGGTAGAAATCAACCCTGGAAGCAGGTAAGAAAGCGAGTTA
TGATAGATGACTATCATTCCGTGCCGCAGAGGAGCTATAGGTCGTCTCTG
TGATGTATGGTCCACATCAGGACGGAATGTAAGGCTTTTCTGTGTGGGAA
AATTAGGTAGGGGAGGGGGGCGACACCACACGTCACGAGGCAAAATAGTC
GTTTTTGTCAGAAAAATCTCTACAAAGNGGGAGGGGAGGGGGGCGACACC
ACACGTCACGAGGCAAAATAGTCGTTTTTGTCAGAAAAAAACTCTACAAA
GGGTGTTACAGAACCACCAAAATGAGACAGAAGTACAATAGAAAACATGA
GATCGGAAGACTTTACAAATATGGTTTGTAAAGCAGATTCGAAGGCGAAG
AGGGGGGGGGGTACAAGTGGGTCATGTTTGGAGGTCATTATATAATAATA
ATAATAATAATATAGGGGTGGTGGCTGGAAAGTTGTTGTAGGAGCTTCCT
GGTTTTGGAATCAGCAGAAAAATGATCTTTAATCTTTATTATCAACATGG
CAGAAATACAAGTAATTTATACAATGCCACGGTATATTATGTTACCCCAG
TTACCCCTGAATTGCGTTGATCTTACAAATCCCATCTATACACACAACGC
AACAAAGAAGACAAAAACCGGAAATCAACACAAAATGCACTCTAGAACTT
AGTGGCAGTAGTTAAGACTAGAGTAGACATTTGTTATACTGTTATTGTCT
GTCCGCCCACTCCGTGTTACATGTACATGTACTTGCAATTAGCCTACGGG
CAGGAATTTGCAATAAAACTTTTCATATATTATTTTTTATTGATGTGTTT
CACATTTTAAATGTATTTGTCTATTAGGTTAGACATGGCAGAGGCAGGTA
ATGGGTCTCTCACTGCTGTTTCCAAGAGCTTTTGTGATGGGTCTCCTACT
GGAGTTTCATTGCACAGGAATGCAAACAATATTGAAGACCAGCCAGAAGC
ACAGACTGATGAGAAACCCTACATGTGCGGTGAGTCTGGGTACAGGTCAG
CTAAAACATGTGGCCTAACCGGACATAGGAGAATCCATATGGGTAAAAAA
TCTTACAAGTGTGACCAGTGTGCCTATTCTGCTGCAGATAAATCCGCCTT
GGACAGCCATCTAGCAATACACATGGGTGAAAAACCCTACATGTGCGAGA
AATGCGGGTACATGACAGCCAACAAGATTGACCTACTTAGACATATGAGA
ACCCATACTGGTGAAAAACCCTTCAAGTGTGACCATTGTGACTATTCTGC
TGCACAAAAATCAGCCTTGAAGAGACATCTAGCAAGACACTCTGGACAAA
AACCCTACATGTGCGGAGAGTGCGGGTACAGGTCAGCTGACAGGAGTAAC
CTATCCAGACATATGAGAACCCATACAGGTGAAAAACCATACAAGTGTGA
CCAGTGTGACTATTCCGCTGCACAGAAATCCCATTTGAACGAACATCTCG
CAAAACACACCGGTGAGAAACCCTACATGTGTGACGATTGCGGGTACAGG
ACAGATGACAAGGGTAGCCTTTCCAAACATATCAGAACCCATACAGGTGA
AAAACCCTTCAAGTGCGACCAGTGTGATTATTCTGCAGCACGTAAATCCA
CCTTGGACAGCCATCTAGCCAAACACACTGGTGAGAAACCCTACATCTGT
GGGGAGTGCGGGTACAGGGCAGCTCAAAAGCGAAACCTATCCGAACATAT
GAGAACCCATACTGGTGAAAAACCCTACAAGTGTGACCAGTGTGACTACT
CTGCTAGACAGAAATCCACCTTAGACAGCCATCTAGCAAAACACTCAGGG
GAGAAACCCTACATGTGTGGGGAGTGCGGGTACAGGTCAGCTGACAGGAG
TAACCTATCCAGACATATGAGGACCCACACTGGTGAAAAACCCTACAAGT
GTGACCAGTGTGACTATTCCGCTGCACAGAAATACCATTTGAACCGACAT
CTAGCAAAACACACTGGTGAAAAATCCTGAAATGAATTTCCGTCAAATCT
AACATAGGCTATCCTGACAGCTAGATTTGTACTGACATCCTACAAAATGT
TGTGCTTCAGTGTAAGTCCGAGGCTTTAACGAGTGTGGATAAAGTTAGAG
GCTGTGATTTTTACTTGCTCCCTTATTTGCCAACCTGTAACATTTTACAC
TATATTATATTTGAACACTAATGATTATACTATACCTGAAGTGTTTAACA
TTATGAAGAATTGTGAAGCTTGTGTTATACGAAGCAATTGCCATAGCTGA
CTGATATGTAAGGACGCAGTTCATTCAAAAAAGAGTTCGAC

Coding sequence (CDS) from alignment at Sc0000655:45914..48254-

>transcript:BL71697_cuf0 ID=transcript:BL71697_cuf0|Name=transcript:BL71697_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2370bp|location=Sequence derived from alignment at Sc0000655:45914..48254- (Branchiostoma lanceolatum)
TTTGTGAAGGTAGAAATCAACCCTGGAAGCAGGTTAGACATGGCAGAGGC
AGGTAATGGGTCTCTCACTGCTGTTTCCAAGAGCTTTTGTGATGGGTCTC
CTACTGGAGTTTCATTGCACAGGAATGCAAACAATATTGAAGACCAGCCA
GAAGCACAGACTGATGAGAAACCCTACATGTGCGGTGAGTCTGGGTACAG
GTCAGCTAAAACATGTGGCCTAACCGGACATAGGAGAATCCATATGGGTA
AAAAATCTTACAAGTGTGACCAGTGTGCCTATTCTGCTGCAGATAAATCC
GCCTTGGACAGCCATCTAGCAATACACATGGGTGAAAAACCCTACATGTG
CGAGAAATGCGGGTACATGACAGCCAACAAGATTGACCTACTTAGACATA
TGAGAACCCATACTGGTGAAAAACCCTTCAAGTGTGACCATTGTGACTAT
TCTGCTGCACAAAAATCAGCCTTGAAGAGACATCTAGCAAGACACTCTGG
ACAAAAACCCTACATGTGCGGAGAGTGCGGGTACAGGTCAGCTGACAGGA
GTAACCTATCCAGACATATGAGAACCCATACAGGTGAAAAACCATACAAG
TGTGACCAGTGTGACTATTCCGCTGCACAGAAATCCCATTTGAACGAACA
TCTCGCAAAACACACCGGTGAGAAACCCTACATGTGTGACGATTGCGGGT
ACAGGACAGATGACAAGGGTAGCCTTTCCAAACATATCAGAACCCATACA
GGTGAAAAACCCTTCAAGTGCGACCAGTGTGATTATTCTGCAGCACGTAA
ATCCACCTTGGACAGCCATCTAGCCAAACACACTGGTGAGAAACCCTACA
TCTGTGGGGAGTGCGGGTACAGGGCAGCTCAAAAGCGAAACCTATCCGAA
CATATGAGAACCCATACTGGTGAAAAACCCTACAAGTGTGACCAGTGTGA
CTACTCTGCTAGACAGAAATCCACCTTAGACAGCCATCTAGCAAAACACT
CAGGGGAGAAACCCTACATGTGTGGGGAGTGCGGGTACAGGTCAGCTGAC
AGGAGTAACCTATCCAGACATATGAGGACCCACACTGGTGAAAAACCCTA
CAAGTGTGACCAGTGTGACTATTCCGCTGCACAGAAATACCATTTGAACC
GACATCTAGCAAAACACACTGGTGAAAAATCCTGATTTGTGAAGGTAGAA
ATCAACCCTGGAAGCAGGTTAGACATGGCAGAGGCAGGTAATGGGTCTCT
CACTGCTGTTTCCAAGAGCTTTTGTGATGGGTCTCCTACTGGAGTTTCAT
TGCACAGGAATGCAAACAATATTGAAGACCAGCCAGAAGCACAGACTGAT
GAGAAACCCTACATGTGCGGTGAGTCTGGGTACAGGTCAGCTAAAACATG
TGGCCTAACCGGACATAGGAGAATCCATATGGGTAAAAAATCTTACAAGT
GTGACCAGTGTGCCTATTCTGCTGCAGATAAATCCGCCTTGGACAGCCAT
CTAGCAATACACATGGGTGAAAAACCCTACATGTGCGAGAAATGCGGGTA
CATGACAGCCAACAAGATTGACCTACTTAGACATATGAGAACCCATACTG
GTGAAAAACCCTTCAAGTGTGACCATTGTGACTATTCTGCTGCACAAAAA
TCAGCCTTGAAGAGACATCTAGCAAGACACTCTGGACAAAAACCCTACAT
GTGCGGAGAGTGCGGGTACAGGTCAGCTGACAGGAGTAACCTATCCAGAC
ATATGAGAACCCATACAGGTGAAAAACCATACAAGTGTGACCAGTGTGAC
TATTCCGCTGCACAGAAATCCCATTTGAACGAACATCTCGCAAAACACAC
CGGTGAGAAACCCTACATGTGTGACGATTGCGGGTACAGGACAGATGACA
AGGGTAGCCTTTCCAAACATATCAGAACCCATACAGGTGAAAAACCCTTC
AAGTGCGACCAGTGTGATTATTCTGCAGCACGTAAATCCACCTTGGACAG
CCATCTAGCCAAACACACTGGTGAGAAACCCTACATCTGTGGGGAGTGCG
GGTACAGGGCAGCTCAAAAGCGAAACCTATCCGAACATATGAGAACCCAT
ACTGGTGAAAAACCCTACAAGTGTGACCAGTGTGACTACTCTGCTAGACA
GAAATCCACCTTAGACAGCCATCTAGCAAAACACTCAGGGGAGAAACCCT
ACATGTGTGGGGAGTGCGGGTACAGGTCAGCTGACAGGAGTAACCTATCC
AGACATATGAGGACCCACACTGGTGAAAAACCCTACAAGTGTGACCAGTG
TGACTATTCCGCTGCACAGAAATACCATTTGAACCGACATCTAGCAAAAC
ACACTGGTGAAAAATCCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL71697gene:BL71697Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL71697_cuf0-E1BL71697_cuf0-E1-1564476830-490958Branchiostoma lanceolatumexon
BL71697_cuf0-E2BL71697_cuf0-E2-1564476830-490955Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL71697_cuf0transcript:BL71697_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000655genomeSc0000655:45914..48254 -
Properties
Property NameValue
Transcript idBL71697_cuf0
Biotypeprotein_coding