transcript:BL71809_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL71809_cuf3
Unique Nametranscript:BL71809_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL71809_cuf3

>transcript:BL71809_cuf3-protein ID=transcript:BL71809_cuf3-protein|Name=transcript:BL71809_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=104bp
MICESKADTLLWKAQVITTNGPLASLPDKVLLKHHVRRQAYRSQTFVGHH
MKIMLQVIQLCSVQWMGVRGMASTQHWTTHHGSLTVKCRRSHLTFTLDSG
PFAT
Run BLAST on NCBI

mRNA from alignment at Sc0000004:855029..859240+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL71809_cuf3 ID=transcript:BL71809_cuf3|Name=transcript:BL71809_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4212bp|location=Sequence derived from alignment at Sc0000004:855029..859240+ (Branchiostoma lanceolatum)
GTTTTGAAGATGGAGGCAAAATCGTCATATCTCTTCGTTCTACCGCGAAA
ATCCGGAATAAAAAGCGATTTTTCTACGCAGACACGGCGATTCGACAAAA
TGAAGGTTCGACGCGTCCGCAGGCATTCTATCGAACAGGTAAGTGACTGT
CGATGCTTGTACATTATCTAAAGTTTTCCGGTGGAATTTTTTTGTATTTT
CTGTTAGGCCATGCGGTCGGTCTATTATTTTTTCTGGTCGCATCTGTCGC
AACTCTCTGTATCTGTAACTGTAACCATTTTTCTTACGCACGGTTTGGCA
GTTTTGAAGGCCATCTTGTGTGTTTATTCATGTTTCTGTGGTGGGATTTT
TCGTGTATTTCACGTTATCTTAGTACGAAACGAAGTCGAGACGTTCCATG
CAAAGTACTAGAGTAGAGTAGAGTACTAAATACCCCTCCCCTTTCCTTGT
CATAAATTATGCAACATTCAACTCACTTTGCTGGATATTCTATACTCTAT
CAACTACATGTAGCATTCGGAATCACCCATTGAGCTTTTCTCAGTTTCGA
AGTAAACGAAATGATCCCCAGAATTCATGTAGATAGTAGACATTCTGACC
CTGATATGGTGTACAATTTATTCATAATTATTGTTTTCCTTTACAACACA
ACACAACACAACACAACACAACACAACACATACCTGGTCATAAAGCCATC
TCTATCAAACTTAACATTTTAGTAATGACCTGTCAACCTAAACATCTTTC
ATTGTTTTTATCATCTAATTATCTTATCAAAGGCCACAGTTCAAGGTCAA
AGGTATATTTAACAGGAGAATCCCTACCATTTATATCAGAATTTTATTTT
AGATCATAGTAGTGATCTTTATCACAAACTCAATGGATCTCTACAATATT
GTCANCCTACCATTTATATCAGAATTTTATTTTAGATCATAGTAGTGATC
TTCATCACAAACTCAATGGATCTCTACAATATTGTCATATTTAATAGTAG
TCATTCATACTGCTTGAAATAGATTGATTACTAGTAAGCAGGTAGGAGTG
CTTAGATTCATAATCATTAGACATTTCCAAAGGCCTCTGACAAGTGAGTG
ATATTCTAATCATGCATGACATTGTAGAGTCATGTTTTATTGTCATTATT
ATGTTGCTGAATTCCTGCTTCAAACTCAAATTACCACATATCTGCCATAC
AAAATTGCAAGTTTGCAGACTCTTTTNCAAAATTGCAATTTTGCAGACTC
TTTTCAACTTCCGGCATCGATCCCCTAGGCAACAGGTCACTGGGCATCAA
AACACAGTTCCAACAAAACAGACTCCTCTCTGCCAGTCTGTCTACACTTT
CCTCTGGGTTGCTTCTGGCAACCCCCAAACTTATCAGGACTGACTTGCAA
AAATTGGGCCTGGAGTGTGAAATTCAGCCATTGTACAGGGTTCCTGATGC
TGGTCGTTCTGCGTTTGTAATATGTTGTTGAACATGGCACGTGTCTATAC
TTGATGCCCTTTTCATCATGTAGTCCTAACCCGAATTTCCACCTTCCCAC
TCAGGGCACAACATGCTCCTCCAAGATGTGCATGTGGATGGGAAATCTTG
CAGTTGGAAACATCTCCCGGAATTCTGAAGGATGCGAGGAAGGTCCTGAT
ACTCTCATCTGGAGAACAGAGGGAACATGATCTGTGTAAGTACATTGTAC
ATTGTACAAGAACATTTTTAGCTATCCTGATTAATTAGTGTTGGAAGCTT
GCATAGCTTCCAAATGTAATCCACCATTCTTCTTCAGCGCTGAGTCAAGT
CATCTTGTGATCTGAGAGGTCATTGATTGATTAAATAAGCTTGTTGTATA
AGCATGTTGGTACAATGCACATACATATTGCTTCTATGTCCATGCAGGAG
AGCAAAGCTGACACCCTCCTATGGAAAGCACAGGTAATAACAACAAATGG
ACCTCTGGCCAGTTTGCCGGACAAAGTACTTCTGAAACACCATGTACGCA
GACAAGCTTACCGCAGCCAGACATTTGTGGGACACCACATGAAGATCATG
CTTCAGGTACTTCTTTATCAGTGATAGCAAAACCTATTATAACTATTTTT
CCAATTTCCAGGCATTTCTGGAGTATTCTGAATTCAAACTGTNTTCTATG
TCCACGCAGGAGAGCAAAGCTGACACCCTCCTATGGAAAGCACAGGTCAT
AACAACAAATGGACCTCTGGCCAGTTTGCTGGACAAAGTACTTCTGAAAC
ACCATGTACGCAGACAAGCTTACCGCAGCCAGACATTTGTGGGACACCAC
ATGAAGATCATGCTTCAGGTACTTCTTTATCAGTGATAGCAAAACCTATT
ATAACTATTTTTCCAATTTCCAGCCATTTCTGGAGTATTCTGAATTCAAA
CTGTTTTCCTTTCAGGATGCTGACAGCCTGCTTTCACTTAACACAGGTCC
CAGAGATCCCAAACCTTAAAAACATTCTTAGAAATATACTTGAATAATAC
TTCCATTTCCTTCCTGCAGGTGACTTGATGTCAGCGTTCATGTGTGTTGT
CCCTGTTGCTAGGTTACCTGACTGTCCTTAGCTGCAAAACAGCAGATAAT
TGTTGTGTTTGCACTTGAATTAGGTGATATTTTGTTGAGCACCTGTACCC
CCAGCTTGAATCTATACTTCATCCGTAGGGATGTCCATGTCAGTTTCCTA
ATAAAGGATATACAAAATAATGGATATACAATTACATGGGAATCCTGTTA
GTAGTTTATTGTAGTTAAATCCATTACGCCCCTCCCTACAAGTGTAACAG
TCCGCGCATGCGTACTGAGCCTGATTTATCTGGTTTGAGGAGACCATGCC
AAATAGATGTTTGTGAATGTACTTCTGTGTCTGTGTGCAATCATTCATCA
TCCTTGCATCCCGAGTGAGTCAGGGGACCGATATCGGTTAACAAATCCCT
GTTAGTTAATCTTGTTTCACTGAGATGATATATTCATAAAGTAAATGAAG
AGTCTTTTATAAGTTAAATATCTGCTCAGTTTGGTAGAGATGATCATTAT
GGTTTGGTAAAGAAAACATGAGAATGGTTGTAGATGTTGTAATGATTTAT
GATATTGATTAGTTAACAAGAACAATAATTCTTACTGCCTATTTCTGCTT
CTTGTCAGGTTATCCAACTCTGCAGCGTCCAGTGGATGGGAGTGCGGGGA
ATGGCCTCAACTCAACACTGGACGACCCATCATGGCAGTCTGACGGTGAA
ATGTAGAAGGTCACACCTGACCTTCACATTGGACAGTGGGCCCTTTGCGA
CATAGCGGGACGTTTTCTCTGACTTCACTATGATGCCATACCTTTAAGCC
ACCTGTACACAGACGATGAAAAAAAACCATAACAGTTTTTTATGCCTTTC
TGTTGAAATGATTCAGCACTTGATAAAAAGCAAAAATATCTACCATAGAT
AGATAAATGACATGTTTTGCTGGGATGTGTTTATCAGGTATGGTGGTACA
TGTATGGTATTTCTGTCCAGTATGCTACATACCTCCTCAGCTGTCTGGTC
TGACTCCAGTTGATCCCTATGTCAGACTGGGCAGTGATGAGGAGATGGTC
GTCTGGAATCCTGATTGTTGCCAGCATGGTCTGCAGCTCTGCCCGGGGAA
TGATCCTGAGCTTGTTCTGTTGTTAAGAGTGTTNGGAATCCTGATTGTTG
CCATCATGGTCTGCAGTTCTGCCCGGGGAATGATCCTGAGCTTGTTCTGT
TGTTAAGAGTGTTAGTCCCCGGGCCCTGCTCTTGCCACCTTACCTGAGCC
CTGTAACTTTAATGAGCGCTTCCGTGCTGTTGCAACCCACACCCCTGAAG
CTGTCTTTCTGGCCTTGGTTATCTTGCACAGTGTGATTGGCTGGTTGAAA
TGAGAATATCAGTTTTATTGTTAGATCATTTGATTTGAAATGATCGATGA
TCTTTGTTGAAGGAATCTCTCAGGTGGGTAACAGCAAGCTGCCCAAGTTG
AATAGTAACTTGTTATAGTTTGCAAAGGATGTCAAAGCAAGTACAGCAAA
GGACTGTGGTTATAGTACCATGATCTGTATGATCATGAAGAATTTCATGT
ATTTTTGAATTAAATTTCTTTTGATGCATTAAGTTGACAATGTGTAATCT
TCTATTAATAGATTATGTGTGTTTGAAAAAAATAAAGTGGTGACTTACTT
GTCTGCATGTAC

Coding sequence (CDS) from alignment at Sc0000004:855029..859240+

>transcript:BL71809_cuf3 ID=transcript:BL71809_cuf3|Name=transcript:BL71809_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=945bp|location=Sequence derived from alignment at Sc0000004:855029..859240+ (Branchiostoma lanceolatum)
ATGATCTGTGAGAGCAAAGCTGACACCCTCCTATGGAAAGCACAGGTAAT
AACAACAAATGGACCTCTGGCCAGTTTGCCGGACAAAGTACTTCTGAAAC
ACCATGTACGCAGACAAGCTTACCGCAGCCAGACATTTGTGGGACACCAC
ATGAAGATCATGCTTCAGGTTATCCAACTCTGCAGCGTCCAGTGGATGGG
AGTGCGGGGAATGGCCTCAACTCAACACTGGACGACCCATCATGGCAGTC
TGACGGTGAAATGTAGAAGGTCACACCTGACCTTCACATTGGACAGTGGG
CCCTTTGCGACATAGATGATCTGTGAGAGCAAAGCTGACACCCTCCTATG
GAAAGCACAGGTAATAACAACAAATGGACCTCTGGCCAGTTTGCCGGACA
AAGTACTTCTGAAACACCATGTACGCAGACAAGCTTACCGCAGCCAGACA
TTTGTGGGACACCACATGAAGATCATGCTTCAGGTTATCCAACTCTGCAG
CGTCCAGTGGATGGGAGTGCGGGGAATGGCCTCAACTCAACACTGGACGA
CCCATCATGGCAGTCTGACGGTGAAATGTAGAAGGTCACACCTGACCTTC
ACATTGGACAGTGGGCCCTTTGCGACATAGATGATCTGTGAGAGCAAAGC
TGACACCCTCCTATGGAAAGCACAGGTAATAACAACAAATGGACCTCTGG
CCAGTTTGCCGGACAAAGTACTTCTGAAACACCATGTACGCAGACAAGCT
TACCGCAGCCAGACATTTGTGGGACACCACATGAAGATCATGCTTCAGGT
TATCCAACTCTGCAGCGTCCAGTGGATGGGAGTGCGGGGAATGGCCTCAA
CTCAACACTGGACGACCCATCATGGCAGTCTGACGGTGAAATGTAGAAGG
TCACACCTGACCTTCACATTGGACAGTGGGCCCTTTGCGACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL71809gene:BL71809Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL71809_cuf3transcript:BL71809_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL71809_cuf3-E1BL71809_cuf3-E1-1564476830-50334Branchiostoma lanceolatumexon
BL71809_cuf3-E2BL71809_cuf3-E2-1564476830-50337Branchiostoma lanceolatumexon
BL71809_cuf3-E3BL71809_cuf3-E3-1564476830-50339Branchiostoma lanceolatumexon
BL71809_cuf3-E4BL71809_cuf3-E4-1564476830-50342Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:855029..859240 +
Properties
Property NameValue
Transcript idBL71809_cuf3
Biotypeprotein_coding