transcript:BL72064_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72064_cuf0
Unique Nametranscript:BL72064_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72064_cuf0

>transcript:BL72064_cuf0-protein ID=transcript:BL72064_cuf0-protein|Name=transcript:BL72064_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
MTKHTDEKSYSCDQCDFSSKWKLSLDNHMVKHTGEKPYMCGECGYRAAYR
THLTRHMRTHTGVRPYKCDQCDFSSAQKGNLVRHMTTHIVTFLPNENKV
Run BLAST on NCBI

mRNA from alignment at Sc0000004:6025943..6027311+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72064_cuf0 ID=transcript:BL72064_cuf0|Name=transcript:BL72064_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1369bp|location=Sequence derived from alignment at Sc0000004:6025943..6027311+ (Branchiostoma lanceolatum)
GAGTGTACATATATGTGGGGAATGTGGGTACAGGGCGCATAAAAGGAATT
ACCTAGTCCTGCATATGAGGAAACATACAGGGGAGAAACCCTATAAGTGT
GACCAGTGCGACTATTCTGCTTCCCGAAAATTCAACGTAGACCGACACAC
GGCCGCTAAACACATTGGTANGAAAATTCAACGTAGACCGACACACGGCC
GCTAAACACAGTGGTAAGAAGCGTTACAGGTGTGAGGAGTGCGGGTACAG
GACATCATACAAGACTCACCTATCCAAACATATGACAAAGCATACAGATG
AAAAATCTTACAGTTGTGACCAGTGTGACTTTTCTTCCAAGTGGAAGCTC
AGTCTCGATAATCACATGGTGAAACACACTGGAGAAAAACCCTACATGTG
TGGGGAGTGCGGGTACAGAGCGGCTTACAGAACTCATCTAACCAGACACA
TGAGAACACATACCGGTGTAAGACCATATAAGTGTGACCAGTGCGACTTT
TCTTCTGCACAGAAAGGCAATTTGGTCCGCCACATGACTACGCATATTGT
GACTTTTCTACCAAATGAAAACAAAGTCTAAATAGTCACATGGGTAAACA
CACTGCGAAAAAACTACGTGTATGGGTACTGCGAATTCGGAATTTTTGAC
TACACATATGATAATTAATTACAAGTGAAAAACTATGCAAATGTGACCAA
ATTACTAACCTGCTGTACAAAAGAATGATGTAGATGAATACAAGATTGTA
CATACTTTTGAGAAATCACACAAGTCAAGTGCCGTAAGTGCGGGCACAGA
ACGGCTTGAAAGTACAATATTTCCTAGCATATGAAAACTATCATAATTAG
ATACATACATAATGTAATAAGAATGTTTTCTTCCAGTAGAGTTTGTTGTA
GATAACATTGATCCCATCGAGACCGTTTACAATACATTGTGACAGGTTGT
TAATGAAATAGGTAAAGTATATTTCATGATTAGCGAATTTGTACATTAAA
TCTATTTTTCGGTCGACCGCTAGCAAGGAACAGTGTACATAAGATTTTTG
ATCTGGCATCTAAGTCATGAAAATTCTCAGAATCCGACAAGTTTTGTATA
ATTTCTTGCAGACTTCCTGTATTTCACACTCTGTTAAAAGATCAAGGCTT
TGATCAGTTGATGTAGGAATGTGTTGCATGTAAACACTGTGCTTCTTTGC
TCAGTTTATATATATTCTTGTGCCATGTTTACAAAAACGATGTGATGTTG
AAAATACTTGTGAGTCGTGACCTGATACATACCTGATAGAAACCATATAG
TCTTGCTTGAAAGGGATCGAAACAATAGGAAGATCATTGTTGCTTGCTGC
TTTGTTGCAAATTAAAGCC

Coding sequence (CDS) from alignment at Sc0000004:6025943..6027311+

>transcript:BL72064_cuf0 ID=transcript:BL72064_cuf0|Name=transcript:BL72064_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=300bp|location=Sequence derived from alignment at Sc0000004:6025943..6027311+ (Branchiostoma lanceolatum)
ATGACAAAGCATACAGATGAAAAATCTTACAGTTGTGACCAGTGTGACTT
TTCTTCCAAGTGGAAGCTCAGTCTCGATAATCACATGGTGAAACACACTG
GAGAAAAACCCTACATGTGTGGGGAGTGCGGGTACAGAGCGGCTTACAGA
ACTCATCTAACCAGACACATGAGAACACATACCGGTGTAAGACCATATAA
GTGTGACCAGTGCGACTTTTCTTCTGCACAGAAAGGCAATTTGGTCCGCC
ACATGACTACGCATATTGTGACTTTTCTACCAAATGAAAACAAAGTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72064gene:BL72064Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72064_cuf0-E1BL72064_cuf0-E1-1564476830-55070Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72064_cuf0transcript:BL72064_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:6025943..6027311 +
Properties
Property NameValue
Transcript idBL72064_cuf0
Biotypeprotein_coding