|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL72743_cuf6 >transcript:BL72743_cuf6-protein ID=transcript:BL72743_cuf6-protein|Name=transcript:BL72743_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=102bp
MSSLIKSNLLSLYFTHDLKIANLAXFIWGCRCVGLERQGSCTSNVPLVVP
ENVTLLLHLIISFNLVPFLYLVLHVIKKCYSSSTLSLCVKQSLRQAGILF
IY Run BLAST on NCBI mRNA from alignment at Sc0000117:939311..947341+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL72743_cuf6 ID=transcript:BL72743_cuf6|Name=transcript:BL72743_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=8031bp|location=Sequence derived from alignment at Sc0000117:939311..947341+ (Branchiostoma lanceolatum)
CAATATTAGTGTTGCTGTCATGGTGGCGGACATTTTAGAGGTAAGTAAGT
CGTCGGTCAAGTCATTTTGTGTGCCATAAATCTTTATGCCTTTCTTTCAT
AGGCTCCCAAACAGGAATTTACATATGTTTCTGTCCATACATATATGTTC
TGTTGTTTCACTATCAAGTATGGTCAACAAGAAGGTGATATGCTTATTAA
TGGCCGAATAAACGGTTTGAAGAACTGTTGTTTTTCCTGTGTGGCCTTCA
CTCAAGGACGAGATGCTTTGAACGGTAATAAATACAATACATTCTGGACT
CAGTTGGAGGTATATGGAAAATATTGATTAGTCCACTGTAGCTTTCCTAC
GCTACGTTCAAAATAAGCAAAGTAAAATTCCAGTAATATATCAAATGCAT
ATATCAGACTACCGTTTGTTTGTAGTGTCTGGTGGCACTACTAATTTATC
GGTTCCTGCCGTGGTATTTCGACTCCAATTTGATACGTGTCTCCTTCACT
TAATTTCACCTTAAGGTTGTAAGACTGCAATCTGTTATCTTATCATTTCA
TGTGACAATGCTCTCAGTACGACACTTTAAAACATTACGGTAAAATGATT
TGATACATTCCTTGGTATTCTAACTGCACGTACTGTATATGTTGAACATT
GACGTACCATTTTATGTAGAACCGGCTGTAAGTAACTGAAAAAAATGTCT
GTGCAGAATATAGCAAGACATTGCACAAAACCCTTTCCCTATATCTAGAA
AAAAAGGGGTATCGATGATTTGCCCTTCTGATGTTTCCTTTTGTTCGCGA
CCAGTCAATCTACATCTTGTACTTATTCATGGGGACGTTAAGAGCCCAGA
AGCTCATACGAAAGATAACAATTAATAACTAAGGATGTCCCCTACTCAAA
GAAGGGTAGTATTTACGTATAATGGAATTACGTTGAATTCCGGGCCCATA
CATAACTCAACTGACTGGTCTTGAGTTCATTGTGGTAATAGAAAATTAGC
ATCAACCTTCGAAACTTTGAGCGGCTGTTAGATACATTTTAAGGTAATTG
TTCTTGGCATATATATGTTACACCATGACTAGACTCACTATTAAAAAGAA
TAGCTGGCTAAGATTTGTGCTGCTTTGTAGAGGGCGCATATTGGTGATGC
ATAGATGTCTTCGAGCATTTTGTGATTTTACATCAGGGGTTCTTAAAGGT
TGTCAGTTTTACCCCCCCCCCCACCACAGAGATTTACATGTTTTAGTGAT
CTTGCGTTCTGGTATTCCACTGCTAAGTATAGCTGACATGAGTGTGAATT
GTTTGTCAATAGTCTGATGATGACTGCTGCCTAGTTACATTTGTCTATCA
CAATCTACACATGGATTCTAAGACGCACAAATACGATTGATGGAAGGCAC
AATTTTATCTATTTTGTTTTATTCACATTCATTTATTGAGTATTAGACAA
GAAGCATATATGCTTATGAATGTCTTATGCTCATGAAATACAGATGACGG
TCAAAAATAACAAAAGGAGCTACTGAATCAAGATTATAACAGAACAATAT
ACAAGCTGGCTTACCAATCTAACTAAACTAGGGGAATCTTTAGGTATTTG
AAATAAAATTGAACACAATATCGTAAATTTGGCAATTGATGGGTAGTGGG
AGGGAGGGACTGCCCGTGAGGAATTGTATTTGCTATGCAGCTATATAGTC
AACATTCTTAAATGATTATTATAAGGTTTCTTTATTTACATGGAGGTGTA
GATGTGTTGGCCTAGAAAGACAGAGATCGTGTACATCAAACGTCCCCCTA
GTTGTCCCGGAAAATGTTACGCTACTCTTTTTTTTTTATTCGATTATACA
TAAATACTTAACATATCAACATATTTCCATTACACATTTACAACAAGCAA
ATAAACACAGTTACATATTGTTGCAGGGGCCATTCCCACTGGCTTTTTTT
GCTCTAGGGTGTGCTCCCTAGTTACATATATCTACAGGGGTCATTCCCAC
TGGCTTTTTTGGCTAGGGTGTGCTCCCTAGGACTTTTTTTGACAGGGGTG
TTTCATCCCCCTGGATTTTCTGTGCTAGGGTTTCTTCCCTAGGACTTTTG
GGTAGGGGTGTCTTCCCTGGGTTTCTGTGCAGGGTTTTCCTTCCCTGTGT
TTTGAATATAAGACTTACCAATTGTTTGTATTTATCACAAGTTTTACAAG
AATTTACAAAATGCATTTAAATATGAAACATATCTACATGTGAAACATTA
CACGCTTTACACACTCAAATTACAACCGCTATACAAGCACAAAAGAATAT
AAAACAAAAGCTACATTAACACCATATCAAACAATTACATCAGATAGAAA
AAAATGTGAGAACAAGCCTATATAGACAAACAGCAGAAACATATACAACT
ATTCATGCATCAGAACAGAATACACAAATGCCATAAATCACAACAACAAC
AAAAACAAGCATCAGGGAAACACACAAAAAAACAAAAGTTACAAATTTAC
AAATACACAAAAACAGGCTACAATACTTACTGTTACAACACCAGCCATAC
AAAACAAAGAGATTACAACATTCCCATACATAGACAATGCCAGGTTTACA
AAAAACATCATACACATACAAGAGCACAATAACATTGTTGGGTACGATAA
ACAACTTACACCAGATCTACATATACAAAAACATCAGTTGGTTGACATTA
CCACAAATACCACTCACACTGTTGTAGTCAGTAACACACTCAAAAATAAA
GAATAAACAAACACAACAATCACAATTACAATCACGGTCACTTTTACAGC
TTTACATTGAATAAATACAATTCCATACATGTGTGTCATTCCTAAGGTCC
CAGAGGAAAGTAGCAAAAATGTCATCTCTCATTAAGTCCAATTTATTATC
TTTATATTTTACCCATGATCTAAAAATCGCAAATTTGGCTNTATTTATAT
GGGGGTGTAGATGTGTTGGCCTAGAAAGACAGGGATCGTGTACATCAAAC
GTCCCCCTAGTTGTCCCGGAAAATGTTACGCTACTCTTACACTTGATCAT
CAGTTTTAATCTAGTTCCATTTTTGTATTTAGTTTTACATGTCATAAAGA
AATGTTACTCATCTTCAACACTTTCTTTATGCGTAAAACAGAGTCTCAGA
CAAGCTGGCATATTATTTATCTACTGATAGTCATATTCTTTCATATCCGT
TAACTGTACTTGTATTTTGTTTTGTTGTGACCTGTACTAAGCCAAGTGTG
GCAGAAATGTGCAATAAAGGTCTTCATTCATTCATTCATTCATTCATTCA
TTATTGTGTAGACCGTTTTGAATTTCTAACCACTTTGCACCTACTCTGAG
GTTCGTTTTAGGTACACATGATTTGTTTCGGACATACTAGAAACATTTTT
TCCGCATAAAAGTCCGTTTTGATTTTTAGGTCTATTAAAATTTAATGTTA
ATGTGTTATTGTCAGTTTTTGTTTCTTAACATTTGCCAGCAAAATACTTG
TACATGTTGTATTTAGATTTCTGTCACTCTCAAACTTCCATTTTCTGATT
AAAAATCGTTTTGAATGACCTTTTAAAAGGTGACAACTAATGCACTCGAT
AGTAATAGATTTATGAAAAAATTCAATTTTTTCATTACTTTTCAGATGAG
ATTGGCTGAAGATCATGATCATTGCATATACAACAGGTGAGGTCTGTTTT
CCTCTGACACTAAACTTACATGTAGGTGTAGACACAGGTCAAACATGGGC
ATCTAAGATAATCTCCGATATGGTAATGTGAGGCAAGAGCCTATATTTCC
TTACAGATGTTGTTCTGAACACACAACAGGTACGCTTGCAGGTGCTAAGA
AATTAAAATAGGCTTATTTTCTGCTGACACGCAAGGTAAAATGCACAATA
TATAAAAGGTGGTGTCGGGTGCAAGTTGTTCGGCTAAGAGCAACAGCATA
TGCACATCTACGTTGTTTTCTTTTGTTTTTCACTCGAGGAGTGACTGATA
AATCTCTAAAATCTTTCATCAATGTTTCCACTCAATTTTGAAATGCCAAT
TCTCACTCTCATGTGTCTGTCCTCCAGATGGGACCCCTCCTGGAGAAGGA
AGCAGAACTTGGTCCATGAGAAACTGCATGGGGAGGAACACAACAGATCA
CAATAGAAAGCATATAATCCAATTCCAATTTACTTGCCAATAAAGATTTG
ATATCTTGATACTAGTATCACAGTAGAGATTCGATATGGATAGTTTTTTT
TTCAAGTGGAGCTTCAGTTATTATATGATTTAAGCCAACGTCATTAATTC
AATTTGCATGAATGTAATAAAATTGTGGGACAAATGTCACAATTTGAAAT
TAAAGAAAGCAAAGCTATGTAGCTTCAATGTCTTGAGTCCTGTATCTTTG
TGTATGTACAAGTGTGAAAGAAATGAAATAGATCTGGGGACGGTTCATTT
ATAAGTAAAAGTTACTTTGACTGGTCAATTTAGGCAAAGGCTGACATGAA
ACAGTACATTTTTGCATGTGAGGGAAATATATAGTTTCTGTATGTTTTGC
TCAGGAATGTATGTGGTTAAGGTCTTGCGAAAAATAGTCATGATACAATT
GTAAAAAAGCAAACACTCCTCTAATTTTGGGATGCAACGCCGGGCGAACC
ACTTTCATTTCAGAACCCCAAGCTAGCCACCTAGCCTACATGAAAATACA
AGCAACACAACACGTGTTACCGCTTACGTTTCGGCAAGAATTATGTGACA
CAATGTTATTCGTCAAGTCAAGATAAAATTGTTTAGAAATATGTTTTATT
TACCACTAGACCCACAAGAAGTCATCGATATTTTATGCTAGCTCCTATCG
GATCTAAGACTTCAGTGTTCAGAAACACATACATCGCCAGGCTTGTCACT
ATCTAAAATAAGTTGGCGTCTGATATCCGTTGTAATAGAAAGCGAGCAGC
GCATCTGTATGATATTATAACATGTAAATATGTCTTTTATATGAACATTG
TAAAGCCACCTACTACATATGAAACGCACACTGCAGTCTTTATCTCCAAT
ACACTTGGGCCACGTCCTGTGAGTGTAACCTATCTATGGCTTTGTCGCAC
TTTGTTCTTTCTTTAACATATATTTTTCCTAGCATGTTAATATCCGGTTA
TGCTTCACAATTTTATGATCTGCTTTGTAGATTTTAATAGTTGAGTTTTT
TAAGATGATGTTGTTTTAAGTGTGCGGGAGAACAAGTTGTAAGGGTGAGC
ATGAATCTTCTTCCCTTTAAGTTATCACTTTGTGATAAACTCAAATAAAC
AAAAAACACCATCAATACAGTGGTAAACAAATGTCGGTATCAGCATTTCT
AGCTTAGCAAACGTTAAGCTGGGGATATTCGTGGACAGAACAATACTTAA
CACAATGGAAGCCTTATTCAAGTATTTCGTGTCACACAGTGTTTACCTTT
ATAAAGGTTAAAACGTATGTCTAACGGAATCTTTTTCTCTTCGATCTGAG
GTCTAAGTTATGATGATCGATGTACTGTGATTAGCAAATATTTGTAGACG
GCTAATATGTCCCCATAATTTGGCTTGACTTTGTAACGAGCTTACTACGT
AAGGAGAAGATATGCGTAAAATGTTCGAAATCGCGTACTAACACGGCTTA
TAGGGTGCAAACTATGAGACGTACTTTCCAGGCGCACCTGGTATTACATG
GTCTGAAAGATAAACCCTGACTTTAGGTCACACCTGGCATCTCTCACGAG
TATCCCCAGGCTTGTTGTGGCACGGGGAACTGACCTTATCGCAGATCAGT
AGATGTAGCCACGATACCACGGAGAATGGAATTCATGTTGCTATTATGTT
AACCTTTACTATTTTTTATCGGCACATTTAATTTACTCAGTAATCATAAA
TAGCGAACGTTTGTTCGTCGGGCTAGGATGAATAACGTTTCTCTAGCGTG
CATCCGAATGTTCCGAGGCAGGACGTTTGCTAGCGCATCCACTTTTTTCT
TCATAACCGCTCGCTGATCCGTATTCAATGTAATATATGTCAACATAAAA
CTAGATAACTGATTTTTGAAAATCAAACTATCGGAGCCATTTTTTTTTTC
AAAATAAAAGAATACAATAGTTCCATGCCCACCTTTAGTATCTGCATAAA
AGCAGATATGATAGTCTTTGTGACATGTAATGTAAAGCAATATTAAAAGT
ATTAGAATTGCTGTAAATATCAAGCATCTCCATACGCAATTAGCCATTGT
TACCATATATCAGCATATATAGTCGTATTATATACCCATATCTGATCTAT
GAAAAAATGTCGGGGGATGTAATTACAAAACTACACTGCGGCTTCTTATG
TTTTTTTTTTAATTGGACGTTTGGCCACTGAATTCAGATTTATGTCCTTT
CTCTACCAATATTTCTGAATTTTAATTAAGATGTAAAAACAGTATTGATA
TTATTAGGTAGATATTTCCCAATTTCACAGTAATTATCCTCCAGATACGT
TTGGTTGCTTCCTAAATATCGACAAAGCAAAAAACTGCTTACCCATTAGT
TTGAACATCCCTCGACAAAAGCGTGTACAATACAAATGTGTAATTGATTG
AAACAAGCTCCCTCTTCTTTTTAAATGTATTACATCCTTGAACTGCCTTA
AGAATATCAAAAACCTCCTACTTCAATTTCCCGTGCAGTCTTAAACATTG
CATTGCATCAGGCTACATAAGTAGAGTGTTTATTTTCTATTTAAAATCAA
TCTATGATTGATTTTCACATGTTACAATCAGCTTAAAGAACAATCGTGTT
AGAGGAAGAGAAAAGATGATGGCTTATTGCTACTTCATCTCCCATATAAG
TTAACAAATGATGACATAGATATAACAAAAATTAAAATGATAATGGTTGT
AAATTACAGCAAATAATAACTATATGATAGTAAATGGTGACAAAGAGTAA
TATATGATGGTTGATATTGTATAAGATATATACGTTGAATCGTAACATAA
CTCAGTTAAGACATTGTAGAGATAAACAGAATGTCAATTACAATTGGACA
TAAACAAATGAGCGTTGGGTAAAATTGATAAAATAAAGTTAAACACAAAT
GAGTGTTGCGTAAAATTAATAAAATAAAGTAAAACCAGAAATTCTACTTA
CAATGTGTACATAGGTAATGAAGGGCTGATTTTAGATTAAGAATAACCGA
TCTACTAGGCACCTGGTACAATGGTATGTTTAAGTGTGGCTGGGGGATGA
AAGGAAGTGATTTTTTTAGATTTAGTTTAAAGCAGAACAATGATGTAAAA
ATCTAAGGTAGTAAAGGGTGGATGTACATTGAAAATGATTCTAAGTTCAC
ATCCATATTTTTTCTTGCTTTTCACTCAATGACTTGCTTATTCACTGAAA
TTGACATTCACTAAAATTGTTTATCATTTATTAGATTATTTCCATATTTA
ATCAATCCTAATTTTTTATCAGATTTTATAATCCTATCTCACGAGTAAAA
TAAAAAAACAAGTAATAATGCCAGCAGAGCTGACCTTGACCGCTACCCAT
ATGGATTAAAGTGTACTGTAGAAAGTATAGTTATCTTAAATATAGATTAG
TTCTGAATGTTCTTATGAAAAGTATTCAGTTTGAAGCTAATATTGTACGT
GTATGACAGAGAACAATTGTAAAATCGTAGAGACATGTGTAAACTTCGTA
ATAGTGACAATCCGTTATATACAGAATCTGTCAGGCATAGCCGTACCCCT
CTACAAGATGGATTATGTAGATTCTGTAATCACACACGCATTGAATATTA
AATACATTTCTAATTTGACTGCGCACTGTATGAAAGCGAGCGTAAATCTC
GGTACAAATTAATTTATCTTGACAAGTTATGTAAGAAGGTATCAAATCAG
GATACTTTTAAGTACTTGATGTCAATACGAATTTTTATGTAATGATCAAA
GTGTGAACTTATGCTGCCATGTGTTTTAAAGAGGAGAAAAAAAATCTACT
AGAGCTTAGCTGTGCGGTAGTGCATTTGTAT Coding sequence (CDS) from alignment at Sc0000117:939311..947341+ >transcript:BL72743_cuf6 ID=transcript:BL72743_cuf6|Name=transcript:BL72743_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=309bp|location=Sequence derived from alignment at Sc0000117:939311..947341+ (Branchiostoma lanceolatum)
ATGTCATCTCTCATTAAGTCCAATTTATTATCTTTATATTTTACCCATGA
TCTAAAAATCGCAAATTTGGCTNTATTTATATGGGGGTGTAGATGTGTTG
GCCTAGAAAGACAGGGATCGTGTACATCAAACGTCCCCCTAGTTGTCCCG
GAAAATGTTACGCTACTCTTACACTTGATCATCAGTTTTAATCTAGTTCC
ATTTTTGTATTTAGTTTTACATGTCATAAAGAAATGTTACTCATCTTCAA
CACTTTCTTTATGCGTAAAACAGAGTCTCAGACAAGCTGGCATATTATTT
ATCTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000117 | genome | Sc0000117:939311..947341 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL72743_cuf6 |
| Biotype | protein_coding |
|
