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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL73539_cuf1 >transcript:BL73539_cuf1-protein ID=transcript:BL73539_cuf1-protein|Name=transcript:BL73539_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=212bp
SHCSPCHVNTGILQAAGLGPELSYGRERNTVVFEVHIQRQKITTQTNQLV
ADLLTEVTATVLRDASVTLSDHRISKLMQGNVSVATVHPSPHFPYGTERG
TTVIGYYATFDCSTQLLPGSLLKQVVMNSTTRLEQAAGGEMIGDPVMFIR
GPSNLQALNTEYFLGLSTLGLLALLLFCAGLQGTTGVCRYRVPVQNRYFL
LDWSETTGPEKK Run BLAST on NCBI mRNA from alignment at Sc0000146:540250..543286+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL73539_cuf1 ID=transcript:BL73539_cuf1|Name=transcript:BL73539_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3037bp|location=Sequence derived from alignment at Sc0000146:540250..543286+ (Branchiostoma lanceolatum)
TCACACTGTTCACCTTGTCATGTCAACACAGGTTCAACTGAAGACCAAAC
TGCCTGTTTAAATATCTAAGTTTTATCAATAAGTTTTATTGCAAGTTCTT
GCCCATAGGCTAATTGCAACAAGTACATGTACATGCAACATGAAAAGGAC
GGACGGACAACATGGAACAGAATAGCATGTGACACTAAATTCTAACTTAA
AGGGTTCGACTTCTTTTTCCGTGACAGCGGAAGACAAATGATCCAAATTT
TAATGTACTAACACCGGTCCTGGTGTCCACCAGGTATACTGCAAGCAGCG
GGTCTCGGCCCGGAACTGTCGTACGGTCGGGAGAGGAACACTGTTGTCTT
TGAAGTTCACATCCAGAGACAAAAGGTAAGCTGATAAGGAATAATTATAC
TATACAAAAATTCATATAGTTATGATATATATAAGTATGTATCAGTCAAT
AAGATCTCAAAGTACTGTATGTATAAATGAAATGTTTTGACCAATGGGTG
AAATACGTGAAGCGGCTTGAACTTCTGTAAACTAGGGTCAGTGTTAACTA
ACTAGGAGTGTCTTTTTCTCCACAGATAACGACGCAGACAAATCAGCTTG
TAGCTGACCTACTGACAGAAGTGACAGCGACCGTACTGCGAGATGCTTCA
GTGACTCTGAGTGACCACAGGTACATTAAAGAACGTTTTAACACTGATGA
ACCAAAAGTACAATGAGATAACAATAAGCTGCTTTGTTAACTTCTTCTTA
TTCATGCTTCCTTCTAGGATAGACAAAGGTGATGTGCAAAAATTGTTGGA
TGCCAATGAAACGCATAGACAGTAAAGACAATGTTTTGACAGTCATTTGT
AATGAAAAGCTTAAGATACATCCGAAAATAATTTCATCAGGTTGGTAGAA
TATAGGATATAGGAGGTTCTTTGTACACAACCAGGTACAGTTCTCACCTG
CTAACGTTTCGATGTCTATCAGACACCTTCTTCAGAGCTTCTGACTGGAG
TGCTGAGATACAGTTTTAATGAAACTTTGTAACAGCGTAGTTTCACTACA
TTTGTTTACAATATAAGGCCACGCTGGCGAAGAAAACATATTATTTATGA
CCTAATGTTGCATGTTTTTGTTGGTGAACGTCTTTTATCTGTCACATGAA
GTTGTTAGTCACATGTATTTTTAGTAAACCAGTCTATACAACCAGTGTAT
TTAGCACGTACGTCCTGGTTACACCATTTTGTGGTCTGGCGTCCAGATGA
TTATAATACTTTGAGCAGCTAAGCAAAAGTCCAAAGTTCTGAAGGGAAAG
CAGATATAGTGTCTGACGTTATCCTTAACCCACCGATTACGTACACCGAG
AAGGGGTGTGTACATATGCATGCCATATAGGTGGCGCTTCGACTAGCGGC
CAGTGTGTCTCGCAACACCTAAAAATCGATCATTTCTATGTCGACTATTG
TTTTTTTAAAGTTTTAAAGATCATTCTAGATGTATTTAAAGACGTCTGGG
TATATTTGGGAAAGTATTCACCGGCTTGAAGCCTAATGTATTGCATAATT
CTATATTTTACATGCAAGTTTGATTTACCTATTAGAGCATAATCTGCAGT
ATCGCTCCCGGCGGGCGAGAGGACCGTCAAATTGCCAAATTTCGATCTTT
TCAAGAATGGTGAAATTGCGAAAGGCTCGCAAACGGTTATACGTTTTGAG
GGTTCTTTGACTTTCATTTGGAATTTACGACCATTTAAAATCGAGAATGA
CCATTTAAAGACATTTCACAAAGAAAACGATTGTGTTATTGACGAATAAT
ATATTTCCTTCATATTTTACCAAGAGTCCACGTGGTGAAGGGTACGTTTC
ATGTAATTGAAACTTTCCGAAGTACGACCACATTCAAATGTCAATCCAAT
TTTGCGAAGTAGTAAGAATTTAAACTAAATGTAGTTGTGTTTTTGTCTGC
CTGTAAATAGATTTCAATATGCTGAAAGATGTGTGATGTAGGTACGGTGC
AATATACATTTAGCCACCAGGTGACACTACTGCAAGTATGGGCTGATTTT
TTGCGTGATTGAAATATCCCAGGTTTTCTTTCGCGAGGTTGTCTTGTTTC
AGAAAACGGTGTTACAAAATTACTTCTACACTCGTTCTTTCAGCGTGTGT
ATCAATCATGATTTATTCATGACTGGGACAAACTGGAGTTAATCCATAGA
GCCATCCATAAAATCAAGATAGTTTAGGCTGAGCCAAAATAGCTAGCATA
TCGTTTTAACATATTATCAAACTAGATTTCTTTTGTCTTGTTCCATATTC
AAACTTTGAGCAGACATGTACCATTAACTGACATGACGTACAAGCTGTGA
AAACAATAGCTCCGGTGTGGAATTGAAAGTGACACAGCTCCTAGATGTCG
AAATATGTCTCTTTGCCTTCTAGGATATCGAAGTTGATGCAAGGAAACGT
GAGCGTAGCCACTGTTCATCCTTCTCCACACTTCCCATACGGAACAGAAA
GAGGGACAACAGTGATCGGCTACTACGCAACGTTCGACTGTAGTACACAG
TTATTACCAGGTAGTCTCCTGAAACAGGTTGTGATGAACAGTACGACACG
GCTGGAGCAGGCTGCTGGTGGAGAGATGATTGGAGACCCCGTGATGTTTA
TACGAGGCCCCAGCAATCTACAGGCACTGAATACAGAATATTTCTTGGGC
TTAAGCACATTGGGTTTACTGGCTTTGCTACTGTTTTGCGCGGGATTGCA
GGGAACTACGGGGGTGTGTCGGTACCGTGTACCGGTACAAAACCGGTATT
TCTTGCTGGACTGGTCCGAAACAACCGGTCCAGAAAAAAAATAAGGGGAC
CGATTGTTGGACCGATTAGGAAATGGACAGTAATAATGGTGGCGCTGAAT
AGAGGGTCAATATGCGACCTGTACCAAGCAACTGTCATTCACAAAAGAAA
TAAAACATTGAAAAACACTGGGAATTTAGTTCTCCGAGTGTCCGTTTAGT
TGATTTTCATCTGATTTTAAGCACAAGAAATACCGTT Coding sequence (CDS) from alignment at Sc0000146:540250..543286+ >transcript:BL73539_cuf1 ID=transcript:BL73539_cuf1|Name=transcript:BL73539_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2556bp|location=Sequence derived from alignment at Sc0000146:540250..543286+ (Branchiostoma lanceolatum)
TCACACTGTTCACCTTGTCATGTCAACACAGGTATACTGCAAGCAGCGGG
TCTCGGCCCGGAACTGTCGTACGGTCGGGAGAGGAACACTGTTGTCTTTG
AAGTTCACATCCAGAGACAAAAGATAACGACGCAGACAAATCAGCTTGTA
GCTGACCTACTGACAGAAGTGACAGCGACCGTACTGCGAGATGCTTCAGT
GACTCTGAGTGACCACAGGATATCGAAGTTGATGCAAGGAAACGTGAGCG
TAGCCACTGTTCATCCTTCTCCACACTTCCCATACGGAACAGAAAGAGGG
ACAACAGTGATCGGCTACTACGCAACGTTCGACTGTAGTACACAGTTATT
ACCAGGTAGTCTCCTGAAACAGGTTGTGATGAACAGTACGACACGGCTGG
AGCAGGCTGCTGGTGGAGAGATGATTGGAGACCCCGTGATGTTTATACGA
GGCCCCAGCAATCTACAGGCACTGAATACAGAATATTTCTTGGGCTTAAG
CACATTGGGTTTACTGGCTTTGCTACTGTTTTGCGCGGGATTGCAGGGAA
CTACGGGGGTGTGTCGGTACCGTGTACCGGTACAAAACCGGTATTTCTTG
CTGGACTGGTCCGAAACAACCGGTCCAGAAAAAAAATAATCACACTGTTC
ACCTTGTCATGTCAACACAGGTATACTGCAAGCAGCGGGTCTCGGCCCGG
AACTGTCGTACGGTCGGGAGAGGAACACTGTTGTCTTTGAAGTTCACATC
CAGAGACAAAAGATAACGACGCAGACAAATCAGCTTGTAGCTGACCTACT
GACAGAAGTGACAGCGACCGTACTGCGAGATGCTTCAGTGACTCTGAGTG
ACCACAGGATATCGAAGTTGATGCAAGGAAACGTGAGCGTAGCCACTGTT
CATCCTTCTCCACACTTCCCATACGGAACAGAAAGAGGGACAACAGTGAT
CGGCTACTACGCAACGTTCGACTGTAGTACACAGTTATTACCAGGTAGTC
TCCTGAAACAGGTTGTGATGAACAGTACGACACGGCTGGAGCAGGCTGCT
GGTGGAGAGATGATTGGAGACCCCGTGATGTTTATACGAGGCCCCAGCAA
TCTACAGGCACTGAATACAGAATATTTCTTGGGCTTAAGCACATTGGGTT
TACTGGCTTTGCTACTGTTTTGCGCGGGATTGCAGGGAACTACGGGGGTG
TGTCGGTACCGTGTACCGGTACAAAACCGGTATTTCTTGCTGGACTGGTC
CGAAACAACCGGTCCAGAAAAAAAATAATCACACTGTTCACCTTGTCATG
TCAACACAGGTATACTGCAAGCAGCGGGTCTCGGCCCGGAACTGTCGTAC
GGTCGGGAGAGGAACACTGTTGTCTTTGAAGTTCACATCCAGAGACAAAA
GATAACGACGCAGACAAATCAGCTTGTAGCTGACCTACTGACAGAAGTGA
CAGCGACCGTACTGCGAGATGCTTCAGTGACTCTGAGTGACCACAGGATA
TCGAAGTTGATGCAAGGAAACGTGAGCGTAGCCACTGTTCATCCTTCTCC
ACACTTCCCATACGGAACAGAAAGAGGGACAACAGTGATCGGCTACTACG
CAACGTTCGACTGTAGTACACAGTTATTACCAGGTAGTCTCCTGAAACAG
GTTGTGATGAACAGTACGACACGGCTGGAGCAGGCTGCTGGTGGAGAGAT
GATTGGAGACCCCGTGATGTTTATACGAGGCCCCAGCAATCTACAGGCAC
TGAATACAGAATATTTCTTGGGCTTAAGCACATTGGGTTTACTGGCTTTG
CTACTGTTTTGCGCGGGATTGCAGGGAACTACGGGGGTGTGTCGGTACCG
TGTACCGGTACAAAACCGGTATTTCTTGCTGGACTGGTCCGAAACAACCG
GTCCAGAAAAAAAATAATCACACTGTTCACCTTGTCATGTCAACACAGGT
ATACTGCAAGCAGCGGGTCTCGGCCCGGAACTGTCGTACGGTCGGGAGAG
GAACACTGTTGTCTTTGAAGTTCACATCCAGAGACAAAAGATAACGACGC
AGACAAATCAGCTTGTAGCTGACCTACTGACAGAAGTGACAGCGACCGTA
CTGCGAGATGCTTCAGTGACTCTGAGTGACCACAGGATATCGAAGTTGAT
GCAAGGAAACGTGAGCGTAGCCACTGTTCATCCTTCTCCACACTTCCCAT
ACGGAACAGAAAGAGGGACAACAGTGATCGGCTACTACGCAACGTTCGAC
TGTAGTACACAGTTATTACCAGGTAGTCTCCTGAAACAGGTTGTGATGAA
CAGTACGACACGGCTGGAGCAGGCTGCTGGTGGAGAGATGATTGGAGACC
CCGTGATGTTTATACGAGGCCCCAGCAATCTACAGGCACTGAATACAGAA
TATTTCTTGGGCTTAAGCACATTGGGTTTACTGGCTTTGCTACTGTTTTG
CGCGGGATTGCAGGGAACTACGGGGGTGTGTCGGTACCGTGTACCGGTAC
AAAACCGGTATTTCTTGCTGGACTGGTCCGAAACAACCGGTCCAGAAAAA
AAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000146 | genome | Sc0000146:540250..543286 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL73539_cuf1 |
| Biotype | protein_coding |
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