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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL75613_cuf0 >transcript:BL75613_cuf0-protein ID=transcript:BL75613_cuf0-protein|Name=transcript:BL75613_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
IRLSLSQAAFHPCSQAKCTFPLSPLQGLSGPPTQVQLYVRRNTNQLSTSH
SLQQGYLNLGGSGTIYNLPRITTTVSFKTSGKLPKGTEACWGTAWFNLVP
VCWMYKPNMAQQSWTPGKHDSDLVFLGHFNVVDLY Run BLAST on NCBI mRNA from alignment at Sc0000012:948781..957665+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL75613_cuf0 ID=transcript:BL75613_cuf0|Name=transcript:BL75613_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=8885bp|location=Sequence derived from alignment at Sc0000012:948781..957665+ (Branchiostoma lanceolatum)
ATACGGCTCTCATTATCCCAGGCTGCCTTTCATCCCTGCAGCCAGGCTAA
GTGCACCTTCCCATTATCCCCATTACAGGGCTTATCAGGACCACCTACTC
AGGTTCAGCTCTACGTCAGACGCAACACGAACCAGCTTAGCACTTCTCAC
AGCCTCCAACAAGGTTACCTGAACTTGGGAGGGTCAGGCACTATCTACAA
CTTACCTAGAATAACAACAACTGTTAGCTTTAAGTAAGTCTCTTCGTTTT
TCTTAAAGCCAGACGTTCTAGATACAACATTGAGTCTGTCAATGTCAACC
TGGAAAAATAGCCTAGCTCTGCAGTGTAAACTCTCGCTCCAATAATTGGT
ACTGTCACAGCATTCTATCTTCTTGAACTTGAAGTTGTTTGCAAGATGTT
TCTTTTACTTTCTGTGTTCTCTAAAAGCATAAAACTTCCCATTTTTAATC
TGTTTGTGTTAAGAGGCATTTCTAATGAAAAGTACTGTTTAAACACCTTC
CTACTACTGTAACCTTTAGTTTGGGCCTTCAGAGAAGCAAGAGCAAGGTT
AGGGAGTTTCAAGATTTTCAAAGATGTAATCTTTATTTGGTAAGACATCT
CAGACATTCAAATTGGACCAGTCTAGAATTGATTTAGAATGAGAGGGTCA
TGGTCAACTTACCCTGAACTCACAAAATGGACTAGCCCAAATCTGGAGCA
AGATAAGGTCTAGGTGGATGTGTGTTGTGGAAACAACCTTTGACCCCGAC
ACCTTGAAAGATGTTTTCTATTCCTTGGGGAGACCCATCTTCCTGACAAT
CTCCCTCCAGACATCACAGCAGAAATCAGCACCTGATCACCATTAGCTCT
GCACATGTTACCCCCCTCCCAGACATCAGCACAGACATCAGCACCTGATG
AAGATTAGCCCTACACATGTAACCACATCCCTGCTTCCTGCCATCACCAC
AGCCTGCCATGTCTGGAGGAGACAGGAGGTGTGGCCACTCACATCTGTCA
TTCTGTCAGGACACATCACTGCTACACCACAAAGTAGATAACATCTAGAG
TACATGTGTATTATGAAGAGTAACCTGGATGACAGACCTACGATCTCTAT
AATATATAGAGAGATTGGGGGTCTGGCAACCAGGCTATATGAAGAGATGA
ACTGTTCTCAAACTGAAAAATTGGACACACATGAAGTTTCAACTGACTCG
CTCAGTCTTCTTCTACTGTCTGTTCAGCTGAAGAAGACTGGGGCAGCCAG
TGGAAAATTCATGTTCAATTTTTTGAGTTGAAGAACAGTTTGTCTCTTCA
TAATGTATTTCACTAAATCAGATGAACTTTCTATGTTTTTCTTAAAAAAG
TTCAATCTTATTTTCAAAATGAGTAGAGTTACTCCCAGGTAGGAACCTGG
GCCACTTGGTCACAATGAAGACATGATAATAAGAAAATCTATTACAAGAT
ATTGGCAGAACAAAGTCATTATCTAAAGCAAATGAGCGTTCTTTTCTACG
ACAAATTCATGAAAAGGCAAGACAAGGCCTACATGAAAGGAGAAGCAACC
TACACACATATGATAATCAGGGATGATGCTGTTGTCTGGCGTCCACATCC
CAGTTTTAAAAGTACACTTGTCCTACATTTTGGTGTCTACAAGGACACCA
TCTTTCAGAGTCTGTCCACACTTGCGACACTGCTAGCCACTGACATTTGT
CCAGACCAGGAGTAAAACAGCACCAGATAATACCTGTCCCTGCCCGGATG
TGGCTGTCCATTTCTAGCACCCTCCTGTCCCATCATGCTCTATGTACCAT
GACCTGTTGTGACAGCCCCACTTCCTCCCTCCATCCATCAACCTGTCACC
CCCCCCCCACCTGCACAACCACCTGATGCAAATTACCTCCCCCCCACTTC
ACCAATCCTCCCATGTGTTCTCTCTCACCAGGTACACACAGGCAGGTGCT
ACAGGGTCATGTCAAATTTTATGGTGGACTCCAAGTCATCAAGGGCATTC
TTCATGCCAGTCAGGTGGTCCTGCTTTGATGTACCTCCTCATTTCACCCT
TCATCAACTTGCAGATATGACCTCTGTGAACTTGGTAGAGTAGGGCTTGA
CCTTTGACAAGGTTACTAGGTACTTCTGTTTTGTATAAGGAGCTAACCTG
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCCCCCCCACTTCACCAATCCTCCCATGTGTTCTCTCACCAGGT
ACACACAGGCAGGTGCTACAGGGTCATGTCAAATTTTATGGTGAGCTCCA
AGTCATCAAGGGCATTCTTCATGCCAGTCAGGTGGTCCTGCTTTGATGTA
CCTCCTCATTTCACCCTTCATCAACTTGCAAATATGACCTCTGTGAACTT
GGTAGAGTAGGGCTTGACCTTTGACAAGGTTACTAGGTACTTCTGTTTTG
TATAAGGAGCTAACCTGAAAAATAATACCTTTATATCTGCTTCTACAAGT
TCTTGCCTCCATAGAATTGTTGGCCCTTCACTTTGCCAGGTTACATAGAT
CTACTGTTTTCTGATTTCTACCATTTAAGAATTGTTAGTAAACTATCAGA
AAGTACTGATATGAAACTATAGTTCCACGATCTCAACTTATTACATGTAT
TTACAAATGTTACTGCGCATCTATGCCACGCACATTTGCGAATCGTAAAG
TCTACTTATGGCCGCCACAGGTCGACTGAGAAAACGGCAGTCCCGATGTC
TAGTATTTGGGGGGATAAGGAGGTCCAGAGGATACTTCATGGCATATATC
GCAACCAAATTGTATTTGAAGACATTTCCAAGACCATGAAGGAATGCGGC
TTCAACATGAGAGCAGTTTTAAAAGTGTCGATCAAAGACCAAGAATCTGA
GGCAGAAGTACAAGGCTGTGCGGGATAATGTCCACCTTAGCAGTTAATCT
AAACAGGTTTGAGCGTGAGTGCAAGTTGGTTCATCATGAACGCAAAATGC
AAACCGTTCAAAGTCAGCTTGTAACCGTTTTGATTTTTTAGCTACAGAAG
CTAGTCCCTTACCCGACCCAGAGGAGTTTTCAATGAAGGCAATGCATTTG
GAAGACCTCCTTCCTCCAAGTTCTTAAAATTCAGTTTCTCCTCTTCCAAC
CAACCTGACAGTGATACACAAGGCAATGCATTTGGAAGACCTCCTTCCAC
CAAGTTGTTAAAATTCAGTTTCTCCTCTTCCACCAGACCTGACAGTGATA
AACTGATGGCCTCTCACCCTTTAATGTGTAACCAAGTTGTCTAGATGAGG
GAGGAAGTAGAAATTGGCCTTGGAGATGAGAGGGCAGGGTACCACTCTCT
GGAGGGTCCTGCAACAACACGGCTCATGGTGATGTAAAAACAGCTGCCTG
GAAGTCTTCCTGGGAAGTTTTCGGATGGTTTCCAATCATACCACAGCATG
TAAGAAACTAACTCCTTCCGTAATGATTGGCATTGATATCTTACAGCAGA
TATTCAAACAGTGACATCTCCTAGTGTGACACCTGTTATCACTTGTCCAG
GAAGGCCAAAGATGAAGGAAACATATGCAGGGCTAACTAAAAATATGTTA
TTTTAGGCACCTGATATTTACGTGTATCATTTTGGAAAATTTGCCTCAAC
AGCAGCAGCAGTTCGCACGCAGAATTTGCCACACAGCACGTGTCAGCTTG
TCTCGTCCATTTTGACTGCCAAGTTAAAAACTTGAAGAAGGCCAGTAACT
ATCATAGGATGCTTTCGCTTTTGCTTTCTATAGTCAAACTGAATCCAATA
CTGTCATACCTGGACTATTACAGCTATTTCGGATGTCATCTATCAAGAGA
AACTTTCCCTGGGTTCATACACTCTGCTAATGTTTGTAGCCGGCTGACAT
CCAATGCTGACAAGACTTCTTCATGCTCAAGGCCAAGGAAATCTCAAGGA
GCATCCTCCTTACAAATCTGCCAGAAGGGGTGTGACTCCTGAGGAGCAGG
GGGCTAATTTCACATGTAACCAGGAAGCCAGGTGCCCCAAACTTCCTCCC
AGGGGAGGCACCCCTCACAGCAGGTCCCCACAGCCCATGTCACCTATACA
GCCCCACATCATTACACACTTCCTGCACCTGATCACTAGCACATGTGGCA
GGAGATGTACCTACAGGAGCCCTGCTAGGACAGCCTGGTTTCAATACAAG
TTAGGTATCCTCGGGTAATGTGCCATGATGGTAACTATACAGCGCAGAGG
GGGATATAAGAGGGCCTGCATGCCCCTTTTACGTAGAGCGTAATCGGCCG
TTTTAATTTCACGTAGAGCGACCACTCCATAGTTTAGCGTAGAGTGTAGG
GGGGGCTTTCTGAATTTAGCATAGAGCGTAGGGAGGCTTTCTGAATTTAG
CGTATTACGTAGCCGGCCCTCCGAATTTAGCGTAGAGCGTTGTCGGGGNC
GTAGGGAGGCTTTCTGAATTTAGCGTATTACGTAGCCAGCCCTCTGAATA
TAGCGTAGAGGGTTGTCGGAACCCCCCCATGCAGGCCCTCCTACATGTAT
ACAGCGCAGAGGGGGTTATAATCTCATCTGTACTTGTCACAGCAAGAAGG
TTATGTCACAGGTGACAGTCCTCATTAATATGGGGAAGTATTATCAACTT
TATATAAGCACCTTTACTGCTTTAGAAATCTTCTGTGGAGTTTTTTTATG
CTGCTAAAGTCGGCGTCACAATTCATGGGAGCGTCGGCTGAATTTGTAGA
TCGCCCGAAGCTCGCCGAATTTCAAAATCGCCAGAGCGTCAACCGTATTT
TCCAATGAAAATCTCGGGTGACGTCCGTTGAACACTAAAAACTAAATATC
CCCCATGAGATCGTACCATCTCTTGGACATGGACGAAGTCAGAATCGACA
AACCTGGTAAAAGGCCAATATTTGGTTCAACTTTGATTTCTAAAAATTGC
CCAAAGCTCGCGTAATCGACAGGACGTTGGCCGTACTTCGGCCGAAAATC
CACATTTGAAGCTTGCCAACACATCGGCCGAGCTGAATTTCTTTTTTGTG
ACGGGGGTTTTACCACGCCCTTACAAGGGCTGTATAATGGGTTGTAAAAA
TAGTAATTTTGCTCTTCCCTGATCTTGATACCAGGCAGTAAAACATTCAT
AGTTTATTTTCAGAAGACTTCATGACCGAATAGCTCTAGTCTGCAGAGCA
TGTGTGGAAGAGATGCACTTTTATGGAGACTTCAGGTGCTGATCTAAATC
TTGTGGTACAGAATTTGCAGTAATGAAAATAAATTAGCAGGATGAAATCT
GATCATAGTAATGATTTAATGAAATAATAATCTAATTTAATGTTACATAA
TCTACTTGTACATAATCCACTACAGGAATGCAATCTTCACCAGATATTTA
AACATTTGCATACAGTTAAACTATACAGGTTTTGAAAGTAACACAACTTT
TTGGGGTACAGCCAATTGGATCCACCTAAGGTTTCTGACTAACTTTTACA
GGTTGTAATGTAATGTCACCTTCTGCCAAGCCTTTCCCAGTCTCCAGGGA
CAAGTTATGGAAGTCTATGATGATCTGGTTCAAATATCCTTCATATGGAT
TGTTCCTCAACAACTTGAACAAAGGGGGTGTTTGGATCCCATTAACAGGT
TCTGGTTGGCAGCCAGAGACCTTGAGATTGATTTTGATGCCTGTCTGAGA
CGAATGAGAGTTATTGAGCCAAGGGGACTTTCCCCATGTCAACTTCAGAG
AAATCACAATGGGTAGAGTACCTACTCCCTTCTCCCATATCCCCCAGGTA
CCTGTATCTACATGTTCCTGCCATAGACGGGAAATAAGGCTCTGAACTTG
ACCAAAAGTGACTGCTGACGTAATTTACCTACAGACAAGTCGCTGACATT
TTGTGACTTGGGTCAAACCAAATAAGAGTTATTAGGTCTACACGCTACAT
GTACCTTGTACTGAATACTTGTGTGACCATAAAAATGTCATAACATTCCT
GACAGTCAATTTGCCTGTAAAACAGACCCACATCAGCTGACAGGAATCAT
GGGCCATCACCTCGCTGATAGGATTTCCGGTAACTTTTGCCCAGGTCTCT
GGAAAAGCCATTCCCTGTCAGGCAATGTGTTTGCAGTGGAGAGGATCATG
TATCTGGGCCGTGTAACCTGTGCTAGTTTATGGGCAGGTCTGCTCCTCTG
GGCTTCATGCCACATTAAGAGGTTTGTAGATACTGCTGTTGAATTAACTT
GATCTGTTTGGAAACAGATGGGGGGAGAGTGATAAAGGAGGGAGAGTGGG
GTCAACAGTAGGGGAGCTAGGGGGTCTTGATTGAAGGCAGCTCTACTCAC
ACGCAAACTATACATACAATGATACATGTACAACATATGATAAAATCCTA
CATGGACAAAATGGCAAGATTTGAAGTATATTGTTACCAGTATGACAGTG
TGTCAGAGAGTTGAACATTGCTATCAAAGACAAGATGACAAAATTTCAAA
TATCTTTTTTTTCTACATCCTGGCTGAAGATTCTACTCCACTTATCTTCA
TAATGATAAGGATAAACAAAGTTAACATAGTCCCCAACCCTCAATAGTGA
AGGTTAGAATAAAGAAAAGTTGCACTTATGAATATAGGTTTTATGAGAAT
CTGATATAGGTACTAGCAGTAGCCTATAAACTGCAATACTTTACAACCTG
GTGATGGGAAAAACCTGGGAATACACATTACCCATCAGTACCTGCCAAGA
TCCCAGCATGCCTAGCTGCTAACCTATAAATCCATTGGTTCCAGGGGCAT
GGCCAGGGCAGGAGGGGGAGGGGCACTGTCAACATGGGGCATGTGGGGGA
GAGGGGCTGTCTGCTTGTACATCTACCAGTGGGGGGACTGGGGAGGCAGG
TTGTTCCCAGGGAGACCATCAGCTGACAAGTTGTTACCAGGAAGGACTGC
CATCTTCTCTAACATGTTTCACACGAGCTGCTATGTAAGCGCCAGATAAA
GAGCGGTTTAAACTGGAGAGAACTCCAAGGACCCCTGTTCACACTAAAAA
GAAAGTGACTAAAACATTGAAGTGACTTGAAATGACCTTTAAGTCACTTT
GATTTAAGTCCTACCTAACTGAAGATTGTACTCTATACACATGTACATGT
CCAGATGTAGTACAGTAGAGGACCTGTGTTTTGTTTGGGCCACTGAATGG
TGTTGCTGTGGAGAGGGGGAGAATTCTTTTTAAAAAAAATCTTTTTTATG
ATGAAAGAATTAAATATTGTGACTTAGTGGCTATCTCATTCTCCATTTCT
TTATCAAGTCAAACTTTCAGGTCAGGGTGCAACAACAGCAATTTGAAAAT
CTCTGCAATCTTATGCAACAGCTTTAAACTATTTTTTGAGATTCTTGGCC
CGAGACCTGGTGTGATACTTATGTTTGGAGCAGACTAAAAGTAAAGCTAA
TATGATATTCTACGTCGATTCATCTTTTAACACACAGCATCAGTATTTGT
AAGTTCTCAGGATTCATCACTGTCTGTCCGTGTTATGTTATTATTATGAT
TTCATTTCCAATCTAACACTTTCACAGGACCAGTGGGAAGCTGCCAAAAG
GCACAGAAGCATGCTGGGGGACGGCTTGGTTTAACTTAGTTCCAGTCTGC
TGGATGTACAAGCCAAACATGGCGCAGCAGTCCTGGACCCCAGGAAAACA
TGACTCTGACCTTGTGTTTCTGGGTCACTTCAATGTTGTGGACTTGTATT
AACTTTAATAATCCGCCATCCACTGTTATTACTGCGCTTGTTTGAACTGA
GGCTGAGCTGATGATGGAAGCCATTTCTGTGTGTTTAGCGATGAACCTTG
ATTAACTTCAACTTCTACTTGAGCTTGGCTCAGGGATGGACCAGAAGTGA
TTATAGTGAAGATTGAATGTACTTTTGAAATACTCTGAAAACACCTTGAA
GGTGATAACAAAAGGTTTGTACAAGCCTGTTGGCAGAGCAATAAAAAACA
AAAAATGATAACTGCAAGAAGCTTTGGAAAAGACAATGTTGAAAAGGAAA
ATAAATGACACCTCCTTCGGTCTATTCTTAAAAGTTAGAAAGTAAAGCAG
TCATCCTCATATTGCGGACGTAGCATACTGCTTTTTCTAAAATTTGGTTG
GTATATTCTTTAGGAGAAGGGAATATTAAGGTTAGTTGTAAGAACACAAT
TGACGTTTTGCTCCATGTGTAGCCCTGTGGGCTCCCTTCTTTCTCTTCTT
GGACAAAGTCACTTGGCCCACCCTAGTCCATTTAGTTTGGACTGTGAAAT
AGGGTCACAATAACAATAAACAACCATGAAGCTTTATTTTACACACCTGT
CGCTCAAGTCATAGTATATCTTACCAACACAGATT Coding sequence (CDS) from alignment at Sc0000012:948781..957665+ >transcript:BL75613_cuf0 ID=transcript:BL75613_cuf0|Name=transcript:BL75613_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=816bp|location=Sequence derived from alignment at Sc0000012:948781..957665+ (Branchiostoma lanceolatum)
ATACGGCTCTCATTATCCCAGGCTGCCTTTCATCCCTGCAGCCAGGCTAA
GTGCACCTTCCCATTATCCCCATTACAGGGCTTATCAGGACCACCTACTC
AGGTTCAGCTCTACGTCAGACGCAACACGAACCAGCTTAGCACTTCTCAC
AGCCTCCAACAAGGTTACCTGAACTTGGGAGGGTCAGGCACTATCTACAA
CTTACCTAGAATAACAACAACTGTTAGCTTTAAGACCAGTGGGAAGCTGC
CAAAAGGCACAGAAGCATGCTGGGGGACGGCTTGGTTTAACTTAGTTCCA
GTCTGCTGGATGTACAAGCCAAACATGGCGCAGCAGTCCTGGACCCCAGG
AAAACATGACTCTGACCTTGTGTTTCTGGGTCACTTCAATGTTGTGGACT
TGTATTAAATACGGCTCTCATTATCCCAGGCTGCCTTTCATCCCTGCAGC
CAGGCTAAGTGCACCTTCCCATTATCCCCATTACAGGGCTTATCAGGACC
ACCTACTCAGGTTCAGCTCTACGTCAGACGCAACACGAACCAGCTTAGCA
CTTCTCACAGCCTCCAACAAGGTTACCTGAACTTGGGAGGGTCAGGCACT
ATCTACAACTTACCTAGAATAACAACAACTGTTAGCTTTAAGACCAGTGG
GAAGCTGCCAAAAGGCACAGAAGCATGCTGGGGGACGGCTTGGTTTAACT
TAGTTCCAGTCTGCTGGATGTACAAGCCAAACATGGCGCAGCAGTCCTGG
ACCCCAGGAAAACATGACTCTGACCTTGTGTTTCTGGGTCACTTCAATGT
TGTGGACTTGTATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000012 | genome | Sc0000012:948781..957665 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL75613_cuf0 |
| Biotype | protein_coding |
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