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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76053_cuf0 >transcript:BL76053_cuf0-protein ID=transcript:BL76053_cuf0-protein|Name=transcript:BL76053_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
MTHLLSSCSLFQAGPPSCYIQIAGVPVYALHSDWHKVPAPRRKIKATTAS
ASLKYTSRLFKNCMIKKKVGHAKKKGQSYARKPRSLLKTNDQQHKEDTNL
TYKKKLRHTSKVQQNDSAKVVSTSSNLKRGLKRKHPEESHNVGHQRQKIG
RYEDSNDGKVTSENICYSRPADEAICYAADEAICYSADGEGEMAVMADPV
LPSCSHHPNVGHLQRSLEGHHQLDAEQRRVSRDGETFDHVCTRQDTDITE
SDPMLTDASQTRLAGKKWKQCEKDDDREVK Run BLAST on NCBI mRNA from alignment at Sc0000001:3274838..3280163- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76053_cuf0 ID=transcript:BL76053_cuf0|Name=transcript:BL76053_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5326bp|location=Sequence derived from alignment at Sc0000001:3274838..3280163- (Branchiostoma lanceolatum)
TGCTAATGCGGACCTCATTTGCATAATTTATGCATAAACTTGTTTTTCCC
TTACTGTAAAGGCTACGGATGAGATGCAGGTACCTTTAGGAAAGGTCAGA
AAACCTGGCCATAAATTATGCTAATGAGTGCATTATGGATAATTTATGCA
TATCCCTAACCATAAAAGCTACGGATGTCATATTTGAGATGTAGGTACCT
TTAGGAAAGGCCAAACACACCTGGCCATAAATTATGCTAATGCCGACCTC
CTTTGCATAATTTATGCAGAAACTTCGTCATATCCTTACAGTCAATGCTA
AGGATGTCATATTTGAGGTGTAGGTAATGGGAGGGGAATATTCTGCATTT
TCCCGAAAATGTTGCCATTCTAGTTTTTCTTCTTTTCCCATGAATGTTAG
TGAAATGGATGAAAATGAAAAACTAACAATTCTTCACATTTTTCTTTGGT
AACTTCGTACCTGCAGCCTGCAGTATCCTGCAGCAGTTGTTCCCCAGGGT
CCTGACACTTCAGGAGTATCTGGAGGAGCTGTTGGCTGATTGCAATGAAA
TACCTCCACTACTGCAGGAGGGAGACAGTCAGGAGTAAGTACTTTTCCCA
AATAAAAGTATTGTCAACTCTACTCTACTCTACTCTACTCTACTCTACTC
TACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTC
TACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTC
TACTCTACTCTACTACTCTACTCATGTCTTATACCCGTCCCTCCTCCCCC
CAAAAAATTGGGCATAGGTTCCCTGCTATATAAAGACCCCTAATGTATAA
GAATATCTGGAAGAGCTGCTGGCTGATTGTGATGCTCCTGTACCTCCACT
GCTGCAAGGAGTAAGTAGTTCAGGGCTTTTTCTAGAAAGGGTTACAAGGG
TGCTGTGCCCCCATGCCCTGACCATGCACCCCCATACCCTGGGGAGCAGA
TCCTCTGACAAACATAGAATTCTGGTTGACCATACTGATACTGGTACTAG
TAGGTCACATGTGGCCACAGTCTTCCACTGTGACCTGTTTGACAGTAATT
TTGCCCCTCAGAAAGCCTATTAGTAAGTAGAATGCCTCATTCTAACTTAA
CCATGGAAGGGGGGAAACTCCACACCATGGAAATTGGAAGGGGGAAATCC
GCACCATGTAACTGCTTGTTTGCTCTGCTGCCTTGCAATTTGCTCCCCTT
GTAATTTTTTCTAGGAGGAGCAAAAGGAGGACGTCTAAATTCTTTGTTTT
CTTAGTGTGGGGCATCCAGAAAGTGTGGGACGCCCTGACGCCCTGCTAGC
CTGGTTTGTAAGCCCTGCCTGTGATTTCAGGTACATCCAGCTCCTCCAGA
CTACCCAGGTGGGTCTGACTGTCGATCAGCGACCCCTCCCACCGCAGGTG
TCGTTTCAGCAGGTGTCAAATCAAGACGAAGTCATACTCAGGACAATAGA
GGTGAGGCATTTTTTTTGTTTGTTCTCATAACTGGTGAGCTGCCTTCAGA
CCCAGTTACACATAGCCGAACATGGTTCCCAACCAGCAGCCATCTAAGGT
TGGCAGTAAGTTGGAGGCAGTCTTACTAGTTGGATTTGGATTTATTGGAA
TTGCAACAGTGCAATACACGTGGGACACAGGAAGCTATTGCTGATGTTGT
GACCCACACACATAATGTACCCGATTTTTACACTTGGGTGGAGTGGGGAA
AATCGTGTTAAGTGCCTTTTTTCCCAAAGGCACAAAATCGGTGGCAGCAG
GGGATTCGAACCCGGAACCCCTTGGTTCTGAGTCGGAAATCCTGCCGTTA
CGCCACACGACCCCCAGTTTTAGAATAAGAGACAAGTTTGACTCCCAGAC
ACACCTTGACCAATACTGACTTATCCCGACCACCATCTTGAAGGTAGTAT
AGTGTGTACAGCCCATAATATTCAGCTGTTGGCCGTCCAATGGGTAGCAT
GCTCTTACTGGAAGGGGCTAATACTTAGTAAGCTATTGTCCAAGCAGAGG
TTAGATTCTGCAATTTCTTGCCTGTTTTAGACTTCCTTTTAGTCGTTGCT
TTACTATTGGTCTTTCAATTTTGATAGCTTTTATTTGTGTGACTGTTGTT
ACATCTCAGGACAATAGAGGTGAAGACTGTGGGATTTTTTGATAGTTTGT
TCTCCTATTAAACACAGAGGTGAGACGTAAATCTAAATGAGGTTAGACCT
GTTTTAGACAATATAGTCGTTCTTGTTGGCCCTTTCTATCTTATTTGTGT
GACTTTTGTAACATCAGACTCTGTTTCCACATGTACAGAAGCTGTGCAAA
AGTCCCGGAGGCCCAGGGCAGAATGTGCTCAGTTTAGGCTACAAGCTGGT
GAGTTACGTTGTGCAATTTTTTTTTACAAGTTCCACCCAGGGCTCGAAAT
ACATTTTTGGAAATAGGTGCACTGGTGCACCCAACCAAAAAAAATTAGGT
GCACAGAAAAAATTTTGGGTGCACCACATAAGATAAAGTTGAATGTCAGC
AAACATAAGTTTGACACTACTGCCTCTCTTTAGAAACTTCAAACAATTAG
CAAGGGATGCATCAAATAAAGTACAACAAAAGGTTATATTGCTTTTTCTG
ATACTTACATTTCAAGAATATTCTATATACTAGTGTACAAGAGAACCTTT
GCCATATAGAGTACAATAATATCTAGGTGCACCAGTGCACCCACAGTCAA
AAATTAGGTTCACAGCTCCAATTTTGGGTGCACACAGGTGCACATGCACC
CAGTATTTCAAGCCCTGCTACCATTGTGTGATGCGTACATGTGAACTAGT
GCAATTTAGTGTGTAGAGTGTTTGCCTTGCACATTGTAGGTTGTGAGTTC
AATCCCCTGCCGAGTCATACCAAGAATTCAGAAATGCTTTCTCAGCACTT
TTTTTACAAAAATTCAACAAGTGTTTTCAGAGTTCTTGAAGATCTTTTTC
AAACCAGTGCATCGTCCAAGGCTTACAATTAGTATTGCATAATTAAAAAG
AAAAATAGGTCAAGCAGACTTAGTAAACACAGTGAAGCAGACTTGGTAGT
AAAAGTAGTACACAATGTATTACACCAGGCGAGGAGTTAAATTTTTGTTT
GTTTGGGAAAATGACATCCCCCTCTTCACTTGTTCACAGGCAAGCTTCAA
CAGCAGGAGTTTTTCCACAAAAGCTCCTCGTCTTGAGAATGTTCATCCAG
ATGCTAAGATCAGGAAATTTCAGAGGAGAGTGTGGAAGACTCTTCTCAGC
AGGTAAGAGGGCCAGTGTCTTGCTATATTGTAAATGAAGGAGAGACAGTT
AGAAACACTGGAATTGAATATGAACATTTAGAAAAAAGGATGCTTGTTTG
GGCAATGTGGAGTGAATTATGTACTTCTTGTCTGGTCCCGGCTGTTACAG
GCTGATAGATGATGATGATGATGATTATATTGTAAATGTATTTATGTTTG
CAGGATTTGATTTCACAGCAGGGCGAAAATAAGCCATAGCTGAAGATTTG
TAGGGCTGATATGAATTAGGATTAGGATTTTACCATGGTCAATATTGACT
GATGGAGGCCGTACTTAAGGGAGAAAATGGAGTGTTTGCATCGGTTTCAA
GTTCATGGTTGAAACAATGAGGCAGATGGGCAGAAGACGGAACAAGAATT
TTTGCAATGGTTTTAAGCTTGCAGTGTACAGGTCATCGCGAAAACTAAGA
ACATTAAAACACCATGAAAAAAATCTACAATTACAGTATGATAAAAATGA
AAAGGACCAAGAACCAAGAAATTGAATGTGTGTGTTCATATGTATGGAGG
AAAGACAACATAAAAATGCCTAAGAACACGTCAAAAACCAGCTAAACCTC
TACTTTGAGAGTATAAGGTACTTGAAGTACCCCTCTTCAGGACCTTGCAA
TACTTGAAGTACCCCTCTTCAGGACCTTGCAATGGAAGACATTTCAAAAC
TAGGCAAGGATGTGTTTTCTGTGAAAGGAAACAAATTTGTTGATTTTCAT
TTTTTCCACATTTCTGCAGGATCGGTGATGATGTCATGACCCATCTCCTC
AGTAGCTGCTCCCTTTTTCAGGCAGGGCCCCCTAGCTGCTACATTCAGAT
TGCAGGTATGCTCCCATACAGTTGTGTAACACAACATTTTACTTCACAAC
ATTGATATATTTTCAACATCTATAGTATGCTTGGTACAGTGGTTAGCCAT
ATGGAACTAGAAGCCATGAGTTTGATCCCGGCTGTGTCACTCACCCAACA
TGTATGGAAGGGCTCGCAGTCCACTGTTCATTGTGCTTGTCAAAAAGAGC
TAGGAGAATTTCCCTGATAGAATGAACCTGTAAATACTGTACAATCATAG
CATCTGTCTTCTCTTTCACGACCAGTGGAAGAATAGCTGAATTCATTGAG
CTAAACTGTATCGATATCACTTTCACTTTGATCACTACATCTTGAAGACC
TTTATCAAATGTAACAAACACAGTAGTTTTCACAAATTTTGCTTTTTTTC
GTAGGTGTCCCTGTGTATGCACTGCACAGTGATTGGCACAAAGTTCCTGC
ACCACGAAGGAAAATAAAGGCAACCACAGCAAGTGCCAGTTTGAAATATA
CCAGCCGACTTTTCAAGAATTGTATGATCAAGAAGAAGGTAGGACATGCC
AAAAAGAAAGGACAAAGCTATGCAAGAAAACCTCGGTCTTTATTGAAAAC
AAATGATCAACAGCACAAAGAAGACACTAACCTCACATATAAGAAGAAGC
TTCGACATACATCAAAAGTACAGCAAAATGATTCAGCAAAAGTGGTATCT
ACGTCTTCCAACTTAAAGAGGGGGCTCAAAAGGAAGCATCCTGAAGAATC
GCACAATGTAGGTCATCAAAGGCAGAAAATTGGACGCTATGAAGACTCAA
ATGATGGCAAGGTTACATCAGAAAACATCTGCTACTCAAGACCTGCAGAT
GAAGCCATCTGCTACGCTGCAGATGAAGCCATCTGCTATTCTGCAGATGG
AGAAGGAGAGATGGCGGTCATGGCTGATCCTGTCTTGCCATCGTGTTCCC
ATCACCCTAATGTGGGTCATCTGCAGAGGTCGCTTGAAGGTCATCATCAG
TTGGACGCAGAGCAAAGACGTGTGTCTCGTGACGGTGAGACCTTTGACCA
TGTATGTACCAGACAGGATACAGACATCACAGAGAGCGATCCCATGCTAA
CTGACGCAAGTCAGACAAGACTGGCGGGCAAGAAATGGAAACAATGTGAG
AAGGATGATGACAGAGAAGTTAAAAG Coding sequence (CDS) from alignment at Sc0000001:3274838..3280163- >transcript:BL76053_cuf0 ID=transcript:BL76053_cuf0|Name=transcript:BL76053_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1680bp|location=Sequence derived from alignment at Sc0000001:3274838..3280163- (Branchiostoma lanceolatum)
ATGACCCATCTCCTCAGTAGCTGCTCCCTTTTTCAGGCAGGGCCCCCTAG
CTGCTACATTCAGATTGCAGGTGTCCCTGTGTATGCACTGCACAGTGATT
GGCACAAAGTTCCTGCACCACGAAGGAAAATAAAGGCAACCACAGCAAGT
GCCAGTTTGAAATATACCAGCCGACTTTTCAAGAATTGTATGATCAAGAA
GAAGGTAGGACATGCCAAAAAGAAAGGACAAAGCTATGCAAGAAAACCTC
GGTCTTTATTGAAAACAAATGATCAACAGCACAAAGAAGACACTAACCTC
ACATATAAGAAGAAGCTTCGACATACATCAAAAGTACAGCAAAATGATTC
AGCAAAAGTGGTATCTACGTCTTCCAACTTAAAGAGGGGGCTCAAAAGGA
AGCATCCTGAAGAATCGCACAATGTAGGTCATCAAAGGCAGAAAATTGGA
CGCTATGAAGACTCAAATGATGGCAAGGTTACATCAGAAAACATCTGCTA
CTCAAGACCTGCAGATGAAGCCATCTGCTACGCTGCAGATGAAGCCATCT
GCTATTCTGCAGATGGAGAAGGAGAGATGGCGGTCATGGCTGATCCTGTC
TTGCCATCGTGTTCCCATCACCCTAATGTGGGTCATCTGCAGAGGTCGCT
TGAAGGTCATCATCAGTTGGACGCAGAGCAAAGACGTGTGTCTCGTGACG
GTGAGACCTTTGACCATGTATGTACCAGACAGGATACAGACATCACAGAG
AGCGATCCCATGCTAACTGACGCAAGTCAGACAAGACTGGCGGGCAAGAA
ATGGAAACAATGTGAGAAGGATGATGACAGAGAAGTTAAAATGACCCATC
TCCTCAGTAGCTGCTCCCTTTTTCAGGCAGGGCCCCCTAGCTGCTACATT
CAGATTGCAGGTGTCCCTGTGTATGCACTGCACAGTGATTGGCACAAAGT
TCCTGCACCACGAAGGAAAATAAAGGCAACCACAGCAAGTGCCAGTTTGA
AATATACCAGCCGACTTTTCAAGAATTGTATGATCAAGAAGAAGGTAGGA
CATGCCAAAAAGAAAGGACAAAGCTATGCAAGAAAACCTCGGTCTTTATT
GAAAACAAATGATCAACAGCACAAAGAAGACACTAACCTCACATATAAGA
AGAAGCTTCGACATACATCAAAAGTACAGCAAAATGATTCAGCAAAAGTG
GTATCTACGTCTTCCAACTTAAAGAGGGGGCTCAAAAGGAAGCATCCTGA
AGAATCGCACAATGTAGGTCATCAAAGGCAGAAAATTGGACGCTATGAAG
ACTCAAATGATGGCAAGGTTACATCAGAAAACATCTGCTACTCAAGACCT
GCAGATGAAGCCATCTGCTACGCTGCAGATGAAGCCATCTGCTATTCTGC
AGATGGAGAAGGAGAGATGGCGGTCATGGCTGATCCTGTCTTGCCATCGT
GTTCCCATCACCCTAATGTGGGTCATCTGCAGAGGTCGCTTGAAGGTCAT
CATCAGTTGGACGCAGAGCAAAGACGTGTGTCTCGTGACGGTGAGACCTT
TGACCATGTATGTACCAGACAGGATACAGACATCACAGAGAGCGATCCCA
TGCTAACTGACGCAAGTCAGACAAGACTGGCGGGCAAGAAATGGAAACAA
TGTGAGAAGGATGATGACAGAGAAGTTAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000001 | genome | Sc0000001:3274838..3280163 - |
Properties
| Property Name | Value |
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| Transcript id | BL76053_cuf0 |
| Biotype | protein_coding |
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