transcript:BL76413_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76413_cuf0
Unique Nametranscript:BL76413_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76413_cuf0

>transcript:BL76413_cuf0-protein ID=transcript:BL76413_cuf0-protein|Name=transcript:BL76413_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=160bp
CHLPICELCLEAAHDDHRSTTVNKAAQEKRSTVQALINEGRNILESFCGF
IRGLGEEEKTLHEQIQQTKNSIIEAYNQMVQKLTERKDHLLAETEQNREK
NLENIQNGRDVVLADVSELSAACDGTEQEMEQGELAFLSKETILTHVVEK
YRRKAAPTPV
Run BLAST on NCBI

mRNA from alignment at Sc0000004:6481180..6481660-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76413_cuf0 ID=transcript:BL76413_cuf0|Name=transcript:BL76413_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=481bp|location=Sequence derived from alignment at Sc0000004:6481180..6481660- (Branchiostoma lanceolatum)
TGCCATTTGCCTATTTGTGAACTGTGTTTGGAGGCAGCCCATGATGATCA
TCGCTCAACAACTGTCAATAAAGCTGCACAGGAAAAGAGATCCACAGTCC
AGGCCTTGATCAATGAGGGGAGGAACATTCTGGAAAGTTTCTGTGGCTTC
ATCAGAGGTCTTGGAGAAGAAGAGAAAACCCTGCATGAACAGATACAACA
GACCAAAAACAGCATCATTGAGGCCTACAACCAAATGGTGCAGAAACTCA
CAGAGAGAAAAGACCACCTCTTGGCTGAAACAGAGCAAAACAGAGAGAAG
AACTTGGAAAACATACAGAATGGAAGGGATGTAGTTTTGGCAGATGTCAG
TGAACTGTCTGCTGCCTGTGATGGAACAGAACAAGAAATGGAGCAGGGAG
AGCTTGCGTTTCTAAGTAAGGAAACCATTTTGACCCACGTGGTGGAAAAG
TACAGAAGAAAAGCAGCACCAACTCCTGTAC

Coding sequence (CDS) from alignment at Sc0000004:6481180..6481660-

>transcript:BL76413_cuf0 ID=transcript:BL76413_cuf0|Name=transcript:BL76413_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=480bp|location=Sequence derived from alignment at Sc0000004:6481180..6481660- (Branchiostoma lanceolatum)
TGCCATTTGCCTATTTGTGAACTGTGTTTGGAGGCAGCCCATGATGATCA
TCGCTCAACAACTGTCAATAAAGCTGCACAGGAAAAGAGATCCACAGTCC
AGGCCTTGATCAATGAGGGGAGGAACATTCTGGAAAGTTTCTGTGGCTTC
ATCAGAGGTCTTGGAGAAGAAGAGAAAACCCTGCATGAACAGATACAACA
GACCAAAAACAGCATCATTGAGGCCTACAACCAAATGGTGCAGAAACTCA
CAGAGAGAAAAGACCACCTCTTGGCTGAAACAGAGCAAAACAGAGAGAAG
AACTTGGAAAACATACAGAATGGAAGGGATGTAGTTTTGGCAGATGTCAG
TGAACTGTCTGCTGCCTGTGATGGAACAGAACAAGAAATGGAGCAGGGAG
AGCTTGCGTTTCTAAGTAAGGAAACCATTTTGACCCACGTGGTGGAAAAG
TACAGAAGAAAAGCAGCACCAACTCCTGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76413gene:BL76413Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76413_cuf0-E1BL76413_cuf0-E1-1564476830-55658Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76413_cuf0transcript:BL76413_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:6481180..6481660 -
Properties
Property NameValue
Transcript idBL76413_cuf0
Biotypeprotein_coding