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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76557_cuf2 >transcript:BL76557_cuf2-protein ID=transcript:BL76557_cuf2-protein|Name=transcript:BL76557_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=141bp
MRLSMVLSYLPKTVRGMRYKWYYNTEHVPGKQWTGKHRRWRPITLTMKRN
TVKRLRWEAETEKYLSTCHLSQAEEAYIDDKSCATKEHEEMIDKRYRAKM
PAHKYMQDQLDHLNIYKRWADPQEYQRDIPIRKKKSYLDFK Run BLAST on NCBI mRNA from alignment at Sc0000176:83246..87584- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76557_cuf2 ID=transcript:BL76557_cuf2|Name=transcript:BL76557_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4339bp|location=Sequence derived from alignment at Sc0000176:83246..87584- (Branchiostoma lanceolatum)
CGTATCGCGAGAAGTTACGAGAAATCAACGAAGCTGGAGAGGTCAGATGA
GGGCACGTCGACTGAGTCAGGAGCAGCAAAAAATATAAAATCATGCGGTT
GTCCATGGTTTTATCGTATCTCCCGAAGACAGTGAGAGGAATGAGATACA
AGTGGTACTACAACACGGAGCACGTCCCCGGAAAACAGTGGACTGGGTGA
GTAGGAGCAGCACAAACATGCGGCTATCATCGCGCCGGCCGGGGCGGGCA
CATGCATGTTTCATCATGATATCAAAATTGACTTTGAGCCACATATCATA
GAGTAGAGTGGATCCGTTCGACCAGGTAGGAAGATCTCTTTCAGTTGAGG
CCGCTCATCCATTTTACTGGACTGTCATTCCAGGCTTGTGTGGACAGTCT
AAGGCTTTGTAGTTGTATACTACTGGGTGATGTTCCAATATTATTGTGTT
TGTCGCACAGGGAAACATTAACAATAGCGCCTATGTCACATTTGCTCGCG
GCAGCTCACAATAATATATATTTAGATATATATGTGAAATTTCCATCTTA
AAGTAAGGTCCCCGGCAGCTTCGGGCCGTAATTTCGCTTTTTGTCGCAAA
ATCACACGAGGTCGCGAGGTCACATCAGAACTTCATATCTCAATGTATTA
CAACTCTTCGGACGTGTCTGAGCTTACCTCTCAATGGTACCGCCGTGCGG
TTTTCGCCATCATGTTTATGACAAATCTACCTACAATTTGATATAAATTC
TAAATGCGTACCACGAAAAGAACTTATTCTACTAATTCCAGTTTGGTGGG
AAGTTTGAATGGGCCAAATGGGACGCCATTTTCCGGTCTGTCGCAAAATT
GCTAATTTGCATAAAATGGCCGAAATCTATTGTCGGTAGGTCGTTTCCCT
GTGTGTCGAGTCTATTTTTTTGAAGGTGTTCACTGTCGGTGCGTTTACAA
CTTCTCCTGGCAACCCGTATAATTGCATCCAGGAAATTGTAGTGACTGTG
ACAGATATAAATTGTCTATTTGATGGCATAATGATATTTTAGGATATGAT
AAACGTAAACTTCCATGCTGCAGTAGCTTTCGTTTCGTTTTTTCGTTTCA
AAGCATCCTCATATTTTGAAGTGAAGCATGATGCTTTTTCAAGTAGCTAG
TGGTAGTGCAATGCGGCTTGGCGTTCTTTTTTGTGGCCAAGCACACCGGG
TCACCCCTACTCTTCTCGATAAGTGTGTTGGGTTCTTTTACGTGCAGAGG
TTTGACGTGAGAATTCCCTCATACACTGGGCTGCCGGCTTTACATCACCA
TCTGAAATGACGAATGTAATCCCTTACAACATGTCCGAGCTGGAGTCGAC
CCCTAGTATCGAACTCTGGCCCTAGGATCTACAGAATTTGATCCAGATGG
CGAAGCAGCAGGGATGCGTTACCGCTTGCGCCACAGGCACAATTTATATA
ACTGTTTTTAATAATGATATATTAGTTTGCCAAATCAAGTGTGCAAGTTA
TTAATCGCTCAGATGTTGTGCTATAAACGTTTAATAGAGAACCAATAGAA
TGGAGTGCAAATGAAGAAGACCAAAGAAATGCCAAAATGCCTACTAGTAG
ATTTGGCATGGTTGCTTATGAAGTTACCAGCAAATGTCTCTTCCTCAGGT
ACTGGCAAGTTGAACTCACAGTGTTTTAGAATTTGCACCGTTAGGGCTTC
CCTGTCATCAGGAGAATGGTTGACAAAACACTGACCTTGTTGGAAGTTGT
ACAATATGTAATTGTAGACCCACACAGGAACATCCTGCAACTGCCCATAG
CCTCGGCCTTGTTAGACAGCAGTGCTAACAACAGATTTACTGTACTTATG
ACCCACAGAAAGCACCGTCGATGGCGGCCAATCACGTTGACGATGAAGAG
GAACACAGTCAAAAGATTGCGGTGGGAAGCAGAGACAGAGAAGTATCTGT
CCACCTGTCACTTATCCCAGGTGAGCAGAAAAAAAGGGTAGACGATAGGT
GGGAAGTGGTTGAGAACATGTGTCAAAATGGGAACTTAATTATATAGCAA
AGGAACAGTTATAGATACATCTGAAAAGATAATAGGAGCCATACTAATGT
ACTTGTTATAGAAAACCAAGGGGAAGTTTTCAGTTTGAGAATCACAGCAC
ATGGGTAAACTGTCATCAATGAGATTCTGTTTAGTAAACATTGAAAAAGG
CTAAGCAGAACATAAACAATAACTAGATTTGAATACAACAACATAATCTC
GTACACAAAGACTCTTTCAACACTTCATTTGTTTTATTCAAATACCCACA
GATGCACAAGGCTGCATTGGGGAATCCCTTCCAGATTTCAGGAACTTTGT
GTTCAGATACTTGAGACCAAAAGAACAACTTTCTTTCATTATGTACACGT
ATTAGACTTCATAACAGTGTGATGTTACTTGAATTTGACAGTAGGGTTGA
AAAGAGTATAGACTTACTGACACAGTATGGCTAAAATTAAATAATACTAG
AGAAAGATCTAGAAAATGTCCTAACTCATCCTGGCGTGGTTGTTAGTAAC
GTTACTAGTAAATTATTTTTGGCGTTACTAGTAATGCTTTATATTTCACA
GGCGGAAGAGGCATATATTGATGATAAATCTTGTGCCACAAAGGAACATG
AAGAGATGATTGATAAGAGGTACCGTGCAAAGATGCCTGCACACAAGTAC
ATGCAGGATCAACTAGATCATCTGAATATCTACAAGAGATGGGCAGATCC
CCAGGAATACCAGAGAGACATTCCTATTCGAAAGAAGAAATCATACTTGG
ACTTCAAGTGAATAAGATTGAAGGTGTAACCATAATGCCATAATCAAAAT
ACCGTATGTTAAGAACTACGTTTTGACCTGGGTGAATGGCCATGGTTTCA
TTTTCAAACAGTCAATTGCAAGGCAGCCAAGTTGCTACACACATGTATAA
CGTACTTTGTTTCTTTTTCAATCAGAGATATCTCATTTTCAGCCAATGAA
ATCCCTGCTATGATAGTATCCTTTAATGACAACACTCAATGATGCTTAAG
ACAAATCTTAAAATCAGTGTACTTTTGCAAGTATTTGCAACACGAGTGGT
ACATAATATGCATAACATTACTGTTTGTCTGCGTGAACAAAATGACTATT
GCACATGTTGAATAAGGTTCTGTTTGATAAACTATGAAAAAGCAGAACTA
AGATGTAGAGGAATATGAGTGAAATGGAATACAACAACATAATCTTCCAA
ACAAAGTCTCGTTTTCAACACTTCTTTTATTTTATTCAAATTTCCGCTTT
AACATAAAGCACTTCCTCACTTCACTGTGGAAAACACCATGGGATAGAAC
CATTTTTACCAGCATGCTTGGTAGCGTTAGATACATTTAGCATGTAATCT
TACATCTGAGGACAGAGACATTTTCTACATAATTTGTCACATATTAAAGT
CTAATAATTAATACATTTTATAGAANGGACAGAGACATTTTCTACATAAT
TTGTCACATATTAAAGTCTAATAATTAATACATTTTGTAGAATAGACTCA
TTTGAACCACATAAACTGGTTTCGTCATAGGGGGGGTTGCTCACAAACTG
CCTATGTCATCACATACTAGGTATGTTAAGAAGAGAAGGCATTCCCCCAA
ACCCTGACTGGTGTCACAGAGCCCGTTGTTTCGCAGGCATTCTTTTCCCG
CGGGTGGACCCGGCGCCGTACACATGCCGCAAACGTTTCAGGATATTGTT
GTTCAGTGGCTTTTCCCCTACCTTGCATAAAATACTGAGAAAAATGGCTG
ATTTTGTACTTATCTGTCGTAAATCAAATTGAAATCGACACCTGCTTCCT
CCAGGTTCGGGAGATGTCGTTCAAACACGTCCCATTCTTTACGGACATGC
GCAGTGACATAGACAGTTTGTGAGCAAAATCTCCCCTATGATGAAACAAG
TTTGTACTGTTCAACTTCATCTATTGGATGTATCTAAACTCAGTTACAAT
TGCACCCATAATGACATTTAACTGTCACTTTTATTTTGATCACAGAGAGT
TTCAAGCTTGTACTTGCCAACAAGAAGCTGCTTGCTTATGACAATATGAG
TACAGTAAAGAACTTTTATACATACACATGTAGCCACCATTACAATGTAT
TACATTTTACAATGTATTACATTTAGGCAAACCATATCCAGTGTATCCAC
AAATGGTAGGTTATAATTACCTGCTCTATGATATATCACAGGAAGGATAT
ACAAAATTTGCCTTGTCAGCTGTCATTTTTCCACCTTCTCAATACCTTGT
TAAGGTATTTTTTATCTTTATTAAACATGTACATCAAAC Coding sequence (CDS) from alignment at Sc0000176:83246..87584- >transcript:BL76557_cuf2 ID=transcript:BL76557_cuf2|Name=transcript:BL76557_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1278bp|location=Sequence derived from alignment at Sc0000176:83246..87584- (Branchiostoma lanceolatum)
ATGCGGTTGTCCATGGTTTTATCGTATCTCCCGAAGACAGTGAGAGGAAT
GAGATACAAGTGGTACTACAACACGGAGCACGTCCCCGGAAAACAGTGGA
CTGGAAAGCACCGTCGATGGCGGCCAATCACGTTGACGATGAAGAGGAAC
ACAGTCAAAAGATTGCGGTGGGAAGCAGAGACAGAGAAGTATCTGTCCAC
CTGTCACTTATCCCAGGCGGAAGAGGCATATATTGATGATAAATCTTGTG
CCACAAAGGAACATGAAGAGATGATTGATAAGAGGTACCGTGCAAAGATG
CCTGCACACAAGTACATGCAGGATCAACTAGATCATCTGAATATCTACAA
GAGATGGGCAGATCCCCAGGAATACCAGAGAGACATTCCTATTCGAAAGA
AGAAATCATACTTGGACTTCAAGTGAATGCGGTTGTCCATGGTTTTATCG
TATCTCCCGAAGACAGTGAGAGGAATGAGATACAAGTGGTACTACAACAC
GGAGCACGTCCCCGGAAAACAGTGGACTGGAAAGCACCGTCGATGGCGGC
CAATCACGTTGACGATGAAGAGGAACACAGTCAAAAGATTGCGGTGGGAA
GCAGAGACAGAGAAGTATCTGTCCACCTGTCACTTATCCCAGGCGGAAGA
GGCATATATTGATGATAAATCTTGTGCCACAAAGGAACATGAAGAGATGA
TTGATAAGAGGTACCGTGCAAAGATGCCTGCACACAAGTACATGCAGGAT
CAACTAGATCATCTGAATATCTACAAGAGATGGGCAGATCCCCAGGAATA
CCAGAGAGACATTCCTATTCGAAAGAAGAAATCATACTTGGACTTCAAGT
GAATGCGGTTGTCCATGGTTTTATCGTATCTCCCGAAGACAGTGAGAGGA
ATGAGATACAAGTGGTACTACAACACGGAGCACGTCCCCGGAAAACAGTG
GACTGGAAAGCACCGTCGATGGCGGCCAATCACGTTGACGATGAAGAGGA
ACACAGTCAAAAGATTGCGGTGGGAAGCAGAGACAGAGAAGTATCTGTCC
ACCTGTCACTTATCCCAGGCGGAAGAGGCATATATTGATGATAAATCTTG
TGCCACAAAGGAACATGAAGAGATGATTGATAAGAGGTACCGTGCAAAGA
TGCCTGCACACAAGTACATGCAGGATCAACTAGATCATCTGAATATCTAC
AAGAGATGGGCAGATCCCCAGGAATACCAGAGAGACATTCCTATTCGAAA
GAAGAAATCATACTTGGACTTCAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000176 | genome | Sc0000176:83246..87584 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76557_cuf2 |
| Biotype | protein_coding |
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