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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77030_cuf0 >transcript:BL77030_cuf0-protein ID=transcript:BL77030_cuf0-protein|Name=transcript:BL77030_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
MPNPSKEHAGSKTETPFHIGGIINFILIFILLIIISALSLFKIPADIKRV
PTFKRNVSGSKEDQIHDINENKNNSDHEQRGRITLMDEYCRKNAARLKF Run BLAST on NCBI mRNA from alignment at xfSc0000093:1304..10303- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77030_cuf0 ID=transcript:BL77030_cuf0|Name=transcript:BL77030_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=9000bp|location=Sequence derived from alignment at xfSc0000093:1304..10303- (Branchiostoma lanceolatum)
CAAACGATTTATGAGAAATATCTTTATAATAGCATATCGAAAAATGGTAA
GAATTCGGTGCTTGGATCAGTCGGTGATATTATATTGCGAATGTATGAGG
CCGTGGGACTCTAGTTTTTGGCGACGCCTCAGGGGCGAGCCAAATTTTTA
CTATATTGTGTGCAGATTGCAAGCATTCTAGGAATTGTACAGGAATGTGA
AAGTCCATGGGACGATAACTCAAGAATGCCTGGATGTATTGTCTTCATAT
TTTGTAGGTAGGTAGGTCTGTGAGAGACCTTGTAATGATTGGATTTTGGG
GCCCCTAGCGACTTTCTATGGTACTGCAGGGGAACTTTCACTTTTCAAAT
CTCGTCTTCTGAACATGCTATAGTCATGATTTTTAAGTGGTGGATAGCTC
TTTGTTAGGAAAATATGTCCTGTAGATTTGGACCCCCTAGCGGCTTTTTT
TGGAACTGCAGGAGCTGATTTTGACTCAAACTTTGAAAGAGAATAACGCA
AGAAGGGGATGACGGATCATCATAATTTTTGGTGTGTAGATAGCTTAAGT
GATGATTTACATAATCATATGCCAATTATGCAAATCAATATCTGATTTGC
ATAATTAATGAGGACAGTTAATAAATCAGCTGCATTCTATTATAGGACTC
TCAAACACATGACATATGTAACTGAGAAATAGATAAATATCGATAGATAT
CAATTATACAAATTGATACTCAATTTGCATAATTAATGACAAAATATTAT
AAATCNATTCTATTATAGGACTCTCAAACACATGACATATGTAACTGAGA
AAGAGATAAATATCGATAGATATCAATTATGCAAATTGATACTTAATTTG
CATAATTAATGACAAAATACTATAAATCCATAGTGGTAAATGATGGGGAT
TTCATTTTTGCACCATTTGGAAGTTAAGTAAATGTGGCCACTATTAGACA
CAAATCTTGCATAGAGGGCCTCATTTACATAATTTATGAGGAAATGGTAC
GATATCTTTTTTTGTGAAAACAAGATTTTCATACATTGGACAACTTGTGT
TATTTTGGTAGAGAAGGTGATCGACTGATATGATTTATGCGAGGTCCTTA
TTTGCATGTGGGCTAAAAACGAAAACGTTAACAGAGACCACCGTCGCCAT
GGCAACATCTTTTTATGTTGCCAATCTTGTTAATTATCTATTTGACAAGT
TAAAAGGAAGCATAGAATTCACAAAATCTCTAGACTTTTAAGGATGTATT
ACGTCTTCAGAATTGAATTTTCAAAATAGGACTCGTCACAAAGTTAATAC
AAGGTTACAAAAATTGATCAGCAATGATGTTTTATTTGATACATTTACAT
CCAAGTTTTCTAATTATCTTCATTACTTTGTTTCAGCTACGTTACAAAAC
ATGCCGAATCCATCAAAAGAACACGCTGGATCGAAGACAGAAACCCCTTT
TCACATAGGTGGAATCATCAATTTCATCTTAATTTTTATTTTACTTATCA
TCATTTCAGCATTAAGTCTTTTCAAAATACCTGCCGATATCAAAAGGGTC
CCTACTTTTAAAAGAAATGTATCTGGATCAAAGGAAGATCAAATTCATGA
CATAAATGGTAAGCATTGTTTCTCGATTTAATTAGGAAATATTATAATCC
GTGTGTTTTTTCTTTACAATTTTCTTTCGTTATCTAGACTAGACTTTTTG
GTGGATACCCTTGACTGGGGAGCTCACCCCCCCCCACACACACATATGGC
GTATGATCACCAAATTTGCAGGGAGTGATGTACATGTAAACCTCATTCAC
ACCTGAAGTTTCGGTATCGTTATAACGTGATATGACGTAATTATAATGTC
ATTGATTTTATTTCATTGGCTGAACCCGTCTAAATAGGTAATACATGAAA
GTATTAAAATAGGGCATATATTGATATTTCAATTTGCAAAGACTTTTATT
GTCAATATGGTAACCGCCTTGATGCAAAAACTAAGACATAGAATGACGTT
ATATGCATTTAGATGGCAGTTGAGTTCCGCCTTCTTGGATCGGCAATCTT
CAATATTTTGAATATACATTTTTAATTGAAGAGAAAAAAAAATTACTTAA
GTAATGACATGGTCCACTATCTTGGATTTTGATCGATGGTGTCATCATAT
TTAATGAATATCATATCATAAAAGATACATTAGATTACAAACTAAGTACA
AACTGTAGAAAACCAAGAGTGATTGACCATGAAAATCTTGAAACGTCATA
GTTTTAACCGAAATAAATGAATTTCGTAGGAATACCCAAGATAAAAGGCA
GCGTTACCGCATGCGCGCGTTAACCCATTTAATAAACAGCTTTTTTTAAC
CTAAATGTCTTTTTCTCGTCCAAAACCTAGTAGTAGAAAGACTAAAGTCA
CCTTTATCCAATGTGGTTTAAGTACGACTAGAACTGTGTAAAGCTTCGTC
GTGGTGCGACAAGGCTATCGATAGTTACAGGATATGGGCCACCAAACAGC
GTGGTATGTTTTTAACAACAACAAAAATCATTCTAGATTTTAGAGTCTCT
TTTTATTGTTTTTGGGTTCTAAGTTGAAAAAAATGATTTTCGAAAATTTC
ATGATTGGCCGGCCAAGATAGCGAATCCCAAGAGTGAGATGTTACAAACG
TCATTCTGACGTCAGTGCGATTACCATTTATAGCAAAAATCTTGGCAATA
TGATACTTTTTGTCTAATTATTGCTTAGTGTATTTATACATATTACGAGT
ATTCGCTGTTGTTTTAGCGAACCGACAATTACGTCGTTTGTGAAGGTTAG
ACATCCAGGTAACCAATATATAAAGAGAATTCAAACTCTACAACTGGATA
CGAATTCGGAGATTTATTTCCGGACGTTTCGAGTGACATCCATCACTCTT
CTTCAGCGTCACTAAAATGAACTAGCAGAACTAACCAGTCCTTATTTACA
ATACCTAGAAAAACCGGTTTTACATGGCAAATCACACAGTCATGCATAAG
ACGTATTGAAATGTAAAACAAGATCTGGAAGGTTCCTATGGTAAGACAAC
ACCATAGGAACACTATTGTCCTTTGGTTGGGGGGAGGGCGCGGTCCCAGG
TACCGGAGAGTTCTACGCGGAGTCCTCCCTTCCTGTTTAGGGTGGGGTTG
TAGATCCTCTCGTAGATGGCCTCCCTGATTCCGCGTTCGTACCATCGTGG
TTCACGATCCAGGACGTCCGTTGTCTCCAGTCTGAATGAGTGTCCCTTGT
TATGTTTCATGTGATGGTAGATGGCTGATGAGTACTTGCTTGCTGTAGCC
CTGCAATGTTGGTCATATCTTGTCTTCAGAGGTTGGCTGGTCTCTCCAAT
GTAGGTGTCGCGGCACTGTGGATGTTCACACTTAAGTCTATAGATGACAT
CAGATTTGATGTGTTTGCGTACGCGGTCCTTGGGATGGACCAGCTTCTGT
CTGAGGGTAGAGTAGGGTTTGAAGCTGGTGGCGATGTTGAAACCTTGAAG
GATACGCCGGAGTTTTTCTGACACTCCTTGGATGTACGGAATAGTGGCAT
TCGCTGTTGTCTTCCTCTTCTGCATATGTTTCTGGTTCGAAGGTTTCTTG
GATTCATCAGTCGGCTTGAGTGCTTTGTGAAAAGTCCATCGTTTGTAGCC
ACACTTGCTCAAGGCGTTCTCAAGGTGTTTGTGTTCGTTGGATTTGGCTT
CCTCTGAAGTGATGATGGTGTCGGCTCGGTGAAACAGGGTTTTGATGACA
CCCAGTTTCTGTTCCAAGGGGTGGTGGGACTGGAAGGCTAGGTACTGGTC
GGTGTGGGTGGGCTTCCGGTATACATCCACATTGAGGTGGCCGTCTTCTT
CCACGATGTCTTTGGAGTCCAGGAAGGGCAGAGTGTTGTTCTGACTCTCC
TCTTGAGTGAACTTAATGTTCTCATCCACCTGGTTGATGTGTTCGAAGAA
CTTGTCTGCAGCAGTTTTCTTGATCCTGCACAAAGTGTCATCGACGTACC
GGAACCAGTTGGCAGGAGGGGTGTCAGAAAAGCTGTTGAGGGCTTCTTTT
TCAAACTTCTCCATGTACAGGTTGACGACTATCGGGGACACTGGTGACCC
CATAGCGCAACCATGCAACTGTTGGTAGTACTGTCCGTTGTAGACGAAGT
AAGTGCATCCCAGGAAGAGCTCCAAGAGTTCACAGATTTGTTTGGCAGAA
AGGTTGGTTCTCTCTCCCAGGGTGGTGTAAGAGTCAAGGAAGTCCTTTAC
CACGGCTACCGCTCCCTTCGGAGGTATGGAGGTGAAGAGTGCCCACACGT
CGTAGGATGTGATTATCTCGTCCTTCTCAACCCGAATGTCCTTTATCTTG
TTGACAAAGTGCCCGCTGTTCTTGACGTGGTGTTCAGATTTGCCCACTAA
CGGCCCTATGATCTCAGCAAGGAACTTGGACAGTTCGTAGGTCGGAGATC
CAGTGCTGGACACAATAGGGCGTACTGGGATATCCTTCTTATGTATCTTG
GGAAGTCCGTAGCAAGCTGGTGGTTGTTCCCCCGTTGGATGGATCTTCAG
ATAAGTCTTTCTGTCAATGACTTTCTTTTTCTCTTCCAAATCTTTCAGTA
CGGCTGTGATCTTAGTCTTAAATCTGTTTGTGGGGTCCTTCTTCAGAGGG
AGGTAGGTGTTGCGGTCTGACAAAAGGTCCTGGACTTTCTTGTCGTATTG
TTCTCTATCCAGTACTACTGTGCACCTACCCTTGTCTGCCGGGAGGATTA
TGATGCCCTTCTTAGTGGAGAGGGATTTGATAGCCGATTGTTCCTCTTGT
GTGATATTGCTCGCAGGTGGTTTGGAGACTTTCAGTGTAGTAGCTACCTT
GGTGCGCAGGGCTTCAGCCTGTTTGTAAGGTAGGCGAGCACGTCGTATGG
CTGATTCTGTTTCTGTAACTATGTCTATTGTCGGGATCCGTTGGGGTGTA
ACTGCAAAGTTAAGTCCCTTGGCAAGAAGCGACTTCTCTGGCTCTGATAG
TGTGTGTTTGCTCAAGTTCTTCACCCACCTTTCTTCCGGCTTGTTTTGTG
CCGTAGTCCCGGAGGTTCTCCAGTTCGGGTCGCCGTCTGCTCTGCTTCTG
TTATTCTTCTGCAGCAGTCGGTCAAATTTGTTCTGCTGTCTGATCTTGAC
CTTGTTGTGTTGTTTGAGTTGACCGCGGGTTGTGAAATCTTCAACTTCGG
CGTAGATGTTGTCTGGTAGTGCTGTTTAGTGAATTCTGGATGTCCTTTTG
TTTTGCTTTCAGGCAGCCTAATTGGAAGTTGACCTGTCGCACTCTTTCGT
TGAGCAACTTCTTTTCCGCGTTGTTGTTCCCCAACCAAAGGACAATATTG
TTCCTATGGTGTTGTCTTACCATAGGAACCTTCCAGATCTTGTTTTACAT
TTCAATACGTCTTATGCATGACTGTGTGATTTGCCATGTAAAACCGGTTT
TTCTAGGTATTGTAAATAAGGACTGGTTAGTTCTGCCAGTTCATTTTAGT
GACGCTGAAGAAGAGTGATGGATGTCACTCGAAACGTCCGGAAATAATTC
TCCGAATTCGTATCCAGTTGTAGAGTTTGAATTCTCTTAAACAATTACGN
TAGTTCATTTTAGTGACGCTGAAGAAGAGTGATGGATGTCACTCGAAACG
TCCGGAAATAAATCTCCGAATTCGTATCCAGTTGTAGAGTTTGAATTCTC
TTCAACAATTACGTCATCGTTATGTCTCATTACTTCATAACGATAATCTA
ACAGTAGGAGTCCAGGAATCTCAATAAACGTTCGGTCTAGATAGGGTTAA
ATGTAAAGAGATTTAAAACATTGAACAGATTGTTTGTATTAGTTCTTAAC
TGTTGGAACATAAATCATTATAAAATATTTCTAGCATGTTCCAACATTTC
TGGGTCAATGGGCTAGAAAAAAGGGCAATTCGGTAATAGACCGATTCCGT
CTAACACCTAACATCGAACGTATAGAACCCCCAAGATCCCCTAGTTCTAT
TAAAAAAAACTCGGTCAAAAACAGCGCTAGTAGGACAGACATGGCTCGGG
TAAAGCAGATTACGTATATCTGAGACAGGCTCTTCACTGTCATGGTTGCA
TGTATGCTCAGTGTTTCTGTTTCAGTTTAATTGGTAACAACCTGCATGTA
ACAAATGTACAAGTCACATTAAATATGTTGAAACTACAGTTAAAATGCTC
TTACTAGAAACAGTAAACATTAGAGTTAAAAACAGCAATCAATATAAAAT
CCATACATAATAGAATAGAAGCTAACAACATGTAAGGATTCTTCTAATAC
AGCAACCTCATTGTCCGCGGCATGAAAGATAACTCATGTCGCTTAGTTTT
ATTTAGTATGGGGAGGATCTGTTCACGCGCCCGACGCAGATTGTAGTTGA
TCTGCGACGGTTTGGACACAAAATCAATCAGAGGGTTGTGAAGATCCTCT
AGCACGTTTTCTGGTGTGCGCAAGGTGGCCTGGTTCCGCCTTGAAGACAG
AGGAGGCATAGAGTCTACGGGGATATCAATAATCTTACAACATCGTTTTG
TACAATTTCGAGTAGGTTTTATAGGTGTTTGGGCAGGCCTCCCCAAACCG
GGCTGGCATAGTCAAGTAAGGGACGTATGAGTACTAGATAAATGCGTGTA
AGCACATCTCAGGACCAAACAAATGAAAATAAAAACACTAGCTCGTGAAC
ATTGACATTGATAGCAACTGCAACGTCCGCTAGCGTATAGTTTCGCCTCC
TCCGTACTGGTGTGTGATAGTGATTAATTTAACGGTGAGCGGGGAAGTAA
AAGAAGGGCATTCAAATTCTTACTTATTGAAGATTATGCTGCTTTCGTGC
ATGCAGCCAGAACAGTGGGAGCCCTATCACAAATATACGTACCCTGTTTT
ATACATGCATCGGCTGCTTGTCGAATGCCCATCAACAAGCTATTGCTATG
CGGCACCTACCACTTCAGCATTGACCGAAAACATCACGCTCTCACTGCAA
TTACGTACATCCCTCCTCAGACAATTCTAATCGATGGATACAGCATTCAA
CAAAAAATGCAGAGCAGTTTTCTTTGACCCGCTTTGAAAGTGTTTTAGAG
CCAAACAAAGTTCACGAATGTCAGTCGACTTTATTGACATCCTGGCTGCG
GCGGCAATTTTTTGTCCGTCAAGCCCTGTTTTTGACAGGGGTGTTCGAAA
TAGAATAGGGCGCGTGGCTTTGGGATCGGTCGATTGACCCATTCCTATAC
AAAGAATAGTAAATTATGTATGTGTGCCAGTAATTGGCAGCTGATAAAAA
ACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAGTCCG
TTCTTCTACAATTTTTTTGGCAAAGCTTTAGAAGCAAGCTTAATAGCTTT
TTTTGCCCGATTTACAAGAAATCACAAAATCGCACAGGGGTTTCTGCAAT
TCGTCCGCGCAAACACTGTGGACGCCTGCATGTGCCTCATTAGCACAGTC
TGGCATCTCGGGAGTTCTTCTAGAATCTGGTATTCTAGCTTTAAAAGGGT
TTTTCAATCCACCCCAGTTGATCTTTTATCACAAGAACGTGCTGAATAGC
AAGCCTCCCGCAAAAAAAAAACTCTGTGGACACCAAAACTTGACGAGTAC
AAAGAACATAAAAAAAAAAATAGCCGGACGATAAAGAACTTGGCTACCGC
TTGGGCAGTCTTCACTGAACGCTTGTCTTGGAGGGGCGCGGTGTCGAAAA
ACAACAACAACAGTAACTCCTCGAAAACACATCTACAGAGCCAGAGTATC
AACCAAACCACGATTCTAGGAGCCCTAGCAAACTGAATTATTAAACTTCT
GGCCATAGATTCCCACTCCACCTATCCAAAAAAATGGCATGGAAAGGACT
GTTCTCTGGTCTTTTAATATTTGCTTGGAAACTCCTAGATATAGTAATAG
TAGTAGGCATTCATCAGTCTTGCAAGATCATGGATAGTACAAATTCTACA
CAATGTACTTATTGTTATTGTTTGTTTTTACGCTTTAAACGTCTGAAGTC
CAGTCTCTAGTTATGGTCTTTTCTATATCCGTTTTGTAGACGCCTAACCG
TTTTTTAACGCGCTTTTTGAACAAATATTATCGCAGAAGTAACGGTAATA
CGTGGGTGCTTTCCTTGCAATGAAATAAATCAACCAAGACACTTTCGCCA
TGGCGACACTTTTTAATTGCTTCACTTTCTGTTTTTGTTTACATTTTCAG
AGAACAAAAATAATTCAGATCATGAACAAAGGGGCAGAATAACATTAATG
GATGAATACTGCAGAAAGAATGCGGCAAGACTAAAGGTAATATGATGTTT
ATATTTGTATCATTGAAGTTTAAAATGCCCAACAGCCTAAGCTTCGATCG
CATATTTCAACCTCCAATAAGATCCGTTTGTGGAAAAGAAAGAGATCCGT
TTGTCTGCGAGAGATCACAATCACCCGTTTATTAACCATAACTTAATTAT
AATGCTAATATTCGGGAATAGGCCTGGTCTAAGACGCAAGAGTGCAAGAA
TTTGTTCGAAAAGGTTACTAGTGTACTGTCTTAAACAATAAAACATAATT
GTTTTTACCTGGTTTAAGCCCATTTGTCCTATTGTGATATGTATTTATCC
TGATAAGTATGTGGTCTCAACCGTGACTACATTCCTTCCGAATACATTCA
CAATTTTTTCAAAAAGTTTGACTTTGCACAATATGTTTTTTTTTTAGTTT
Coding sequence (CDS) from alignment at xfSc0000093:1304..10303- >transcript:BL77030_cuf0 ID=transcript:BL77030_cuf0|Name=transcript:BL77030_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=891bp|location=Sequence derived from alignment at xfSc0000093:1304..10303- (Branchiostoma lanceolatum)
ATGCCGAATCCATCAAAAGAACACGCTGGATCGAAGACAGAAACCCCTTT
TCACATAGGTGGAATCATCAATTTCATCTTAATTTTTATTTTACTTATCA
TCATTTCAGCATTAAGTCTTTTCAAAATACCTGCCGATATCAAAAGGGTC
CCTACTTTTAAAAGAAATGTATCTGGATCAAAGGAAGATCAAATTCATGA
CATAAATGAGAACAAAAATAATTCAGATCATGAACAAAGGGGCAGAATAA
CATTAATGGATGAATACTGCAGAAAGAATGCGGCAAGACTAAAGTTTATG
CCGAATCCATCAAAAGAACACGCTGGATCGAAGACAGAAACCCCTTTTCA
CATAGGTGGAATCATCAATTTCATCTTAATTTTTATTTTACTTATCATCA
TTTCAGCATTAAGTCTTTTCAAAATACCTGCCGATATCAAAAGGGTCCCT
ACTTTTAAAAGAAATGTATCTGGATCAAAGGAAGATCAAATTCATGACAT
AAATGAGAACAAAAATAATTCAGATCATGAACAAAGGGGCAGAATAACAT
TAATGGATGAATACTGCAGAAAGAATGCGGCAAGACTAAAGTTTATGCCG
AATCCATCAAAAGAACACGCTGGATCGAAGACAGAAACCCCTTTTCACAT
AGGTGGAATCATCAATTTCATCTTAATTTTTATTTTACTTATCATCATTT
CAGCATTAAGTCTTTTCAAAATACCTGCCGATATCAAAAGGGTCCCTACT
TTTAAAAGAAATGTATCTGGATCAAAGGAAGATCAAATTCATGACATAAA
TGAGAACAAAAATAATTCAGATCATGAACAAAGGGGCAGAATAACATTAA
TGGATGAATACTGCAGAAAGAATGCGGCAAGACTAAAGTTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0000093 | genome | xfSc0000093:1304..10303 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77030_cuf0 |
| Biotype | protein_coding |
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