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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77977_cuf0 >transcript:BL77977_cuf0-protein ID=transcript:BL77977_cuf0-protein|Name=transcript:BL77977_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=242bp
MTQGQIQLSIGCVMPMTQGQIQYSIGCVIQVTRSQIQLFVGCIIPMTQGQ
VQLSIGCVIPVTRGQIQLFVGCIIPMTQGQIQLSIGCVIPMTQGQIQLST
GHVIPMTKGQVQLSIGCVIPMTQGQVQLSIGCVIPVTRGQIQLSVGCVMP
MTQGQIQLSIGCVIPVTQGQIQLFVGCIIPMTQGQIQLSVGCVIPMTQGQ
IQLSVGCIIPMTQGQIQLSVGCIIPMTKGQIQLPVGCAIPMT Run BLAST on NCBI mRNA from alignment at Sc0000107:989501..993665+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77977_cuf0 ID=transcript:BL77977_cuf0|Name=transcript:BL77977_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4165bp|location=Sequence derived from alignment at Sc0000107:989501..993665+ (Branchiostoma lanceolatum)
GTCTCGCCTAAGATGGGAGGCATTGCTAACAAGGGACCAGTTTCACCGCT
ATTGCCTAACACCTGAAAGACACCAGACATGGCATGTCAAATTGTCGAGG
CTTCTTCTGGCCCCTATAATCCATACTTTATATGACGGGTGTCTTGAAAA
GTAGAGAGCGAAGCATGGTATCTGCAAAATAAGCTACAAGACTTACATAG
ACTCTCCCGGCATACCGGCTGGTTTCCTACGACGGCATTGGTCTCGCCTA
AGATGGGAGGCATTGCTAACAAGGGACCAGTTTCACCGCTATTGCCTAAC
ACCTGAAAGACGTCAGACGTTTCATGTTCATGAGATAAAGTTAAAACAGG
ACTTCTTCTTGCCCCCTATCCATAGGACAGACGGAAGTATCAAACTACCA
TCATTTGCTGCTAAGGTACATGTATTCTAATTTTTTTGTCAACAAAATTT
GCATAATTTATACCTATCAATATTCCTCTCTTTTTCAGCTGTATATGCTT
GTTGCTTGAAAATCCTATCATGGTACGTGGGGAATCGATGAAATTTCCTC
ATTGATTTTGCAGATTAGCTTCTAATTTGAACAATGAGCATCTTCCTGTG
TTAATTATCACTTAAGTGATGTACATGCCAAACACAACTGAAACGAGATT
TGTTTTACGATGGCCCACTAGCACTGCAAGATGTATGTTGACCTATTGTC
CTAAATTCCAAGACCGCTGCATTTATGATAGTAAACGTTGCACATTTCCA
ATTTTACCTAAGTAATTATGTAGAATAGGTTCTTATTTCCACAACATAGG
TCTCATTATGTTAATCAACATCCAAGATACCTATGTATGAAAAAATAATG
AAAAGCCAGCAATCCCTTCTTGAGTTATCCTCTTCGAAAGTTTCCAACAA
AAAGACCCACTGCAATTCCATACCAGCTGCTAGGGAGTTCAAGCTCACTC
CTTGCTCCAAGAGCTATCTACCACTTAAAAACCAGGACCCTAGCATTTTG
AAGTTCCGCTGCAGTACCGTAGGAAGTGCTTGGAATCCCATTATCGAACT
TAACTTTTGTTTTTCAACACCTACCCTTCTATTGAATATATAATGAGGAC
ATACACGTTCTGGTGCATTACTGTAAGATGCCGCGAGAAAGACCATTATC
AAGGTTTACCTTTGTCTTACCAACATCTACCTAACTACAAAACATCTATC
CACAGCTTGTTGGGTTATCCTGATTGCATCGAACCCACATGCATCCACAA
CCACGTCACCATGAAACAGTTCTGGTGGAGATTGTGATGCTCAACACCAC
ATATCTCATATGTACAACCATACCTATCCTTGGTGTCGAAATACTATCCA
CACACTGACATACCTGTCACTGATGCTGAACACCACACCTGTCAGACATA
CAACCACACCTGTCCTTGGTGCTGACAACTACATCTGTCAGGCATACAAC
CAAACCTTCCCTCAGTGCTGAACACCACACCTGTCAGACATAAAACCACA
CCTGTCCTTGGTGCTGAACACCACACCTGTCAGATATACAATCAAACTTG
TCCTTGGTGCTAAACACCACACTTGGCAGACATACAACCACACCTGTCCT
TGGTGCTGACCACTACATCTGTCAGACATACAACTACACTTGTCCTCAGT
GCTGAACACCACACCCGTCAGACATACAACTACACCTGTCCTTGGTGCTA
ACCTCTACATCTGTCAGACATACAATCACACCTGTCCTTGGTGCTGAACA
CCGCAAATGTCCGACATACAACCTAACTTGTCCTTGGTGCTCAACACCAC
ACCTGTCAAACATACAACCTCACCTGTCCTTGGTGCTCAAGTTGTTTAAC
ATGAGTTTGTACACTAGCTGTATGTTTCACTATTGTTATTGCTTTATTCT
TTCCCCACGCCATTGTGTTATTTATAATCATTACAGTTGTTTTTATTGTT
GTATGCAAGAGAAGGGTCTTGTCAAGAAATCACTGATTGTAGCCAAATAA
TCTTGAAAAATATGTGAATAAATAAGATAACAAACTTTCGTACTGTGTTT
TTTACAAGACACCCAGGTTCTATCCTTAGGTTGTCATTCCAATGACACAG
GGTCAGATTCAGCTATCCATAGGGTGTGTCATGCCAATGACACAGGGCCA
GATTCAGTATTCCATAGGGTGTGTCATTCAAGTGACACGTAGTCAGATTC
AGCTATTCGTAGGGTGTATCATTCCAATGACACAGGGTCAGGTTCAGCTA
TCCATAGGGTGTGTCATTCCGGTGACACGGGGTCAGATTCAGCTATTCGT
AGGGTGTATCATTCCAATGACACAGGGTCAGATTCAGCTATCCATAGGGT
GTGTCATTCCAATGACACAGGGTCAGATTCAGCTATCCACAGGGCATGTG
ATTCCAATGACAAAGGGTCAGGTTCAGCTATCCATAGGGTGTGTTATTCC
AATGACACAGGGTCAGGTTCAGCTATCCATAGGGTGTGTCATTCCGGTGA
CACGGGGTCAGATTCAGTTATCAGTAGGGTGTGTCATGCCAATGACACAG
GGTCAGATTCAGTTATCCATAGGGTGTGTCATTCCAGTGACACAGGGTCA
GATTCAGCTATTCGTAGGGTGTATCATTCCAATGACACAGGGTCAGATTC
AGTTATCAGTAGGGTGTGTCATTCCAATGACACAGGGTCAAATTCAGTTA
TCAGTAGGGTGTATCATTCCAATGACACAGGGTCAAATTCAGTTATCCGT
AGGCTGTATCATTCCAATGACAAAGGGTCAGATTCAGCTACCCGTAGGGT
GTGCCATTCCAATGACATAGGGTCAGATTCAGCTACCCGTAGGGTGTGTC
ATTCCAATGACACAGGGTCAGATTCAGCTATCCGTAGGGTGTGTCATTCC
AATGACACAGGATCAGATTTAGCTTACGAAAGATCATCAACCCATATAAT
ATATTTGTATACTTACATAAAAGTTATAAGTCGATAGTGCGGCAAGTGCC
TGAAATATGGTCAACTACCTTTATAGATTCACACCTTTCGTCATCATTAT
CATCATCATTCTCCCGGATTTACTCCGGTGAGATGCAATCATTGTATACT
TATATAAAAGTTATATGTCGATAGTGCGGCAAGTGCCCGACATGTGGTCA
ACTACCTTTATAGATCACACTTTTTATCATTATGATCATCATCATTTTCC
CGGATTTACTCCGGTGAGATACAATCAATTGTATACTTATATAAAAGTTA
TAAGTCGATAGTGCAGCAAGTGCCCGTGATATGGTCAAATATCTTTATAG
ATTCACACCTTTCATCATCATTATCATCATCATTCTCCTGGATTTACTCC
AGTGAGATACAACCAATTGTATACTTACATAAAAGTTTCCGTTACACATT
TTATACGTTGGAGTGTGGCAAGTGCCCCCATTGGTTTTCAGTATGCATCA
TCGTATGAATCATCGTATCACATGCATATGGGGAGCCACCCCTAATTACT
TCCATATTAGGGTTAGGCACAAGTGTTTTTCTGGAGTATGTTCTGGTTAT
TGAAGCATTATTGCTGTTACGTTTCTCTTGTGCAGGCTGGTGAAAATATT
TTGAACGAGACTTTGGTTAGAAATGTTACAAGGTTTGTAATCATTTCTTG
AGAGACAGAAGAAGTGTGCTGATTGTATTTCTCAGACGTGCTGTTTCGAA
CTCATTTATATAGACGAGTATGGTCTCGCCTTGTTACCTTCGCCGAGAAG
GTTATGCATAGGGTAGCGTTTGTATGTGTGTATGTATGTTTGTTTGTTTG
TTTGTAACGTACAGCATAACTAGAGAAGGCTTGGATGGATTGTCTTGATA
TTTGGTAGGTGGGTAGGTCTTGATGAGACATGGAAATGTTTAGATTTTGG
GTCCCCTAGCAGCTTGTTACGGTACTGCAGTGGAACTCCCTGTTTTGATA
TCTCGTGTTCTGGACATGCTATGGTCCTGATTTTTTAGTGGTAGATAGCT
CTTTGGAGAGAGAGTAAGTTGTATAGGTTTTGGACCCCTAGTGGCTTTTT
TGGAACTGCAGGAGCAAGTGTTACTTCAGACTTTGAAAGGGAACAACTCA
AGAAGGGCCTGATGGATGGTCATAATTTTTGGTAAGTAGATAGCTTGAGT
GATGATGTACATGAT Coding sequence (CDS) from alignment at Sc0000107:989501..993665+ >transcript:BL77977_cuf0 ID=transcript:BL77977_cuf0|Name=transcript:BL77977_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=729bp|location=Sequence derived from alignment at Sc0000107:989501..993665+ (Branchiostoma lanceolatum)
ATGACACAGGGTCAGATTCAGCTATCCATAGGGTGTGTCATGCCAATGAC
ACAGGGCCAGATTCAGTATTCCATAGGGTGTGTCATTCAAGTGACACGTA
GTCAGATTCAGCTATTCGTAGGGTGTATCATTCCAATGACACAGGGTCAG
GTTCAGCTATCCATAGGGTGTGTCATTCCGGTGACACGGGGTCAGATTCA
GCTATTCGTAGGGTGTATCATTCCAATGACACAGGGTCAGATTCAGCTAT
CCATAGGGTGTGTCATTCCAATGACACAGGGTCAGATTCAGCTATCCACA
GGGCATGTGATTCCAATGACAAAGGGTCAGGTTCAGCTATCCATAGGGTG
TGTTATTCCAATGACACAGGGTCAGGTTCAGCTATCCATAGGGTGTGTCA
TTCCGGTGACACGGGGTCAGATTCAGTTATCAGTAGGGTGTGTCATGCCA
ATGACACAGGGTCAGATTCAGTTATCCATAGGGTGTGTCATTCCAGTGAC
ACAGGGTCAGATTCAGCTATTCGTAGGGTGTATCATTCCAATGACACAGG
GTCAGATTCAGTTATCAGTAGGGTGTGTCATTCCAATGACACAGGGTCAA
ATTCAGTTATCAGTAGGGTGTATCATTCCAATGACACAGGGTCAAATTCA
GTTATCCGTAGGCTGTATCATTCCAATGACAAAGGGTCAGATTCAGCTAC
CCGTAGGGTGTGCCATTCCAATGACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000107 | genome | Sc0000107:989501..993665 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77977_cuf0 |
| Biotype | protein_coding |
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