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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78077_cuf1 >transcript:BL78077_cuf1-protein ID=transcript:BL78077_cuf1-protein|Name=transcript:BL78077_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
ALRAAGLIIFRRVPQIQYLLLQTSYGQHHWTPPKGHVDPGESDLETALRE
TQEEAGLTAEHLNIIENFKKVLEYNVRGKPKTVIYWLAELKNNDTPVVLS
DEHQKFEWLGLEDACAYSGYRDMQEALRYADTFLNSPNT Run BLAST on NCBI mRNA from alignment at Sc0000024:287763..290101- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78077_cuf1 ID=transcript:BL78077_cuf1|Name=transcript:BL78077_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2339bp|location=Sequence derived from alignment at Sc0000024:287763..290101- (Branchiostoma lanceolatum)
AAGCTCTTCGTGCCGCTGGGCTCATAATTTTCCGCCGTGTCCCACAAATC
CAGTACCTTCTGCTTCAGACGTCCTACGGACAGCATCACTGGACACCACC
GAAAGGTTGCAACTTGCTGTCTTTCATTCGTTTTTCTTTTGAGTTCCGCA
AAATAGGGATATTAGACCCATATTATAGTCGTGGCCAAAGTCTAACAACA
ACGCATTCGAGGGAAACTCTAGCTACGAAGCAAACGGCCTGAAAATGAAT
GTTGTACAAATCGGCGCCATGCATATGACATGTTTAGACGTTTCGCCGTC
AAGAGGACACCTAGCTGTAACCCAGAACTACTAAGGACGATTCAATTTCA
GACCTTTATTACAAACTCAGCCCTGTGAACTCGGCCCAACACCCTGGTCA
ACTCGGCTCGGCCAGGGTAATAGGGCAGGGCTAGGTTGTTGCCGGGCCGA
ATTGACCAGGCAGGTTAGGGTGTTGGTCCTAGTTGGAAAAGGGCCGAAGC
GTCCGACAACCTTCTAACCCAACCGTGACCCTTATTCTAACTGTAACCTT
ATCCGTTTAACCACGTCCATAGCCATAAAAAGTAGTCGTCCTGGCCATGG
TGCTGATAGTAGTGATACGCCTGAAAATACATTGGAAGTAGATATATTTT
GATTTAGTATGATTCATATACCCTTTTTGAAAATAATGTTTTATTCAAAT
CTAACCCTATGTTGTCCAGGACACGTGGATCCCGGTGAGTCCGACCTCGA
AACTGCCTTACGCGAGACACAGGAAGAAGCCGGCCTCACCGCAGAACATC
TCAACATCATTGAGAACTTCAAGAAAGTCTTGGAGTACAACGTGAGGGGC
AAACCCAAGACGGTGATATACTGGCTCGCAGAGCTGAAAAACAACGACAC
GCCCGTGGTGTTGTCGGACGAACATCAGAAGTTTGAGTGGTTGGGGTTGG
AAAATGCATGTACGTACTCTGGGTATCAGGACATGCAAGATGCACTCAGA
GACGCGGACTCCTTTCTTAACTCTCCGAAGACGTGATTCTCAGAATTATG
TGCACTTCCACTTGCTCTTTCTTTTTCTCGCTACTTGTAATGTACCGAAT
CAAGCCGCTGGGGGGCCCAAAATCTTATCAGTTTGAGATCTGGGGTTGGA
AGACGCATGTACGTACGTACATGTGGGTACCGGACATGCAAGAGCCACTC
AGATATGCGGACTCCTTCCTCAACTCTCCGAATTCGTGCCTATTCTCAGG
ATAAATTATGTGCACGTTCACTTTGTTTTACTACTTGCAATGTTGCTATG
AGATGATATGTAATGATATATGTTGATTGAGTTATTTACTTATTAGGACA
CAAATGACTCCAAAANGGGGGGGGGGGATCTGATCAGTTTGAAATCTGAG
ATTGAAGGATGCGTGCACGTACTCCGGGTACCGGGACATGCAAGAGACGC
TCGGGGATGCGGACTCCTTCCTCAACTTTCTGAAGACGTGACGATTCTCA
GGATAAATTATGTGCACTTCCACTTGCTCTTTGTTTTACTGGCTACTGTA
ATGTACTTTATCAAGCCACTGGGCCCAAAATCTAATCATTTTTTGGATCT
GAGGTTGGAGGATGCGTGTGCGTACTCTGGGTACCGGGACATGCAAGAGG
CACTCAGATATGCGGACACCTTCCTTAACTCTCCGAATACGTGACGATTC
TCATGGCAATGAGCACTTCCACTTTCTCTTTGGTTTACTAGCTACTTGTA
ATGTACCGAATCAAGCCGCTGGGGGGCCCAAAATCTTATCAGTTTGAGAT
CTGGGGTTGGAAGACGCATGTACGTACGTACATGTGGGTACCGGACATGC
AAGAGCCACTCAGATATGCGGACTCCTTCCTCAACTCTCCGAATTCGTGC
CTATTCTCAGGATAAATTATGTGCACGTTCACTTTGTTTTACTACTTGCA
ATGTTGCTATGAGATGATATGTAATGATATATGTTGATTGAGTTATTTAC
TTATTAGGACACAAATGACTCCAAAAATAAACGCGAGCGCTTCTAGAAGT
GTACGAAGGAGGCTAAGTTTTATATACATTTCAGTTATCTGCCGAAAATG
AAAAGTACAGAAAAGCAGCAGTAACCTGTAACTAAACGTTGACGCCAAAC
AAATGAATAAAACACATCGATAACTGACGCTGTATGGTATACCATGGTAA
AACTAGAAGAGATCACTTGATGAGTTGAGTTTATGGTGGTTTGACGTTAG
GGCATAAGGTTATAGAAGTAGAAACGAATATTGTGTCAATATACTTATGA
TAACGAAATGAAACAGACTGAGTTCGCAGTAATTCTTTT Coding sequence (CDS) from alignment at Sc0000024:287763..290101- >transcript:BL78077_cuf1 ID=transcript:BL78077_cuf1|Name=transcript:BL78077_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1260bp|location=Sequence derived from alignment at Sc0000024:287763..290101- (Branchiostoma lanceolatum)
GCTCTTCGTGCCGCTGGGCTCATAATTTTCCGCCGTGTCCCACAAATCCA
GTACCTTCTGCTTCAGACGTCCTACGGACAGCATCACTGGACACCACCGA
AAGGACACGTGGATCCCGGTGAGTCCGACCTCGAAACTGCCTTACGCGAG
ACACAGGAAGAAGCCGGCCTCACCGCAGAACATCTCAACATCATTGAGAA
CTTCAAGAAAGTCTTGGAGTACAACGTGAGGGGCAAACCCAAGACGGTGA
TATACTGGCTCGCAGAGCTGAAAAACAACGACACGCCCGTGGTGTTGTCG
GACGAACATCAGAAGTTTGAGTGGTTGGGGTTGGAGGATGCGTGTGCGTA
CTCTGGGTACCGGGACATGCAAGAGGCACTCAGATATGCGGACACCTTCC
TTAACTCTCCGAATACGTGAGCTCTTCGTGCCGCTGGGCTCATAATTTTC
CGCCGTGTCCCACAAATCCAGTACCTTCTGCTTCAGACGTCCTACGGACA
GCATCACTGGACACCACCGAAAGGACACGTGGATCCCGGTGAGTCCGACC
TCGAAACTGCCTTACGCGAGACACAGGAAGAAGCCGGCCTCACCGCAGAA
CATCTCAACATCATTGAGAACTTCAAGAAAGTCTTGGAGTACAACGTGAG
GGGCAAACCCAAGACGGTGATATACTGGCTCGCAGAGCTGAAAAACAACG
ACACGCCCGTGGTGTTGTCGGACGAACATCAGAAGTTTGAGTGGTTGGGG
TTGGAGGATGCGTGTGCGTACTCTGGGTACCGGGACATGCAAGAGGCACT
CAGATATGCGGACACCTTCCTTAACTCTCCGAATACGTGAGCTCTTCGTG
CCGCTGGGCTCATAATTTTCCGCCGTGTCCCACAAATCCAGTACCTTCTG
CTTCAGACGTCCTACGGACAGCATCACTGGACACCACCGAAAGGACACGT
GGATCCCGGTGAGTCCGACCTCGAAACTGCCTTACGCGAGACACAGGAAG
AAGCCGGCCTCACCGCAGAACATCTCAACATCATTGAGAACTTCAAGAAA
GTCTTGGAGTACAACGTGAGGGGCAAACCCAAGACGGTGATATACTGGCT
CGCAGAGCTGAAAAACAACGACACGCCCGTGGTGTTGTCGGACGAACATC
AGAAGTTTGAGTGGTTGGGGTTGGAGGATGCGTGTGCGTACTCTGGGTAC
CGGGACATGCAAGAGGCACTCAGATATGCGGACACCTTCCTTAACTCTCC
GAATACGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000024 | genome | Sc0000024:287763..290101 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78077_cuf1 |
| Biotype | protein_coding |
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