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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78166_cuf0 >transcript:BL78166_cuf0-protein ID=transcript:BL78166_cuf0-protein|Name=transcript:BL78166_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=327bp
MATTKSCCNDVSSGEVGGFAHTLQWCEECSKQFSRRSALETHMHTGEKPY
RCEKCSRQFNRLAVLKTHMRTHTAEKLNRCDCEECSRQFSLPCRQKKHVR
THTGGKPYRCKKCSRHFSQLGNLKKHMRTHTGEKPYRCEECRKHFRQQCD
LKKHMRTHTGEKPYRCEECRKHFRQQCDLKKHMRSHTGEKPYRCEECGRQ
FSRHDDLRRHIMTHTGEKPYRCEKCSRQFRLRSSLKKHVQTHTGEKPYKC
EECSRHFNELHTLKSHIRTHTGEKPYQCEECRKHFRQQCDLKKHMRSHTG
EKPYRCEECGRQFSRLDDLRRHIMTHT Run BLAST on NCBI mRNA from alignment at Sc0000038:2282477..2287810- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78166_cuf0 ID=transcript:BL78166_cuf0|Name=transcript:BL78166_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5334bp|location=Sequence derived from alignment at Sc0000038:2282477..2287810- (Branchiostoma lanceolatum)
GTTGAGATGTTTTTGAACGGTTCAATATTTCTGTCGCACTATTTTTCTTA
CCATACGTCACGGGATCGCGGATTGAGAAACTGTGTAGTGCGACCTTGTC
CAAAGTATACATTGTCACAAGTTCTCTTTCATCCATCGTTGTTCTTGGAC
GAGTCAGTTTCAACCGTTAGAATCGTCGATAGCTTTCAGGTAAGATTTAT
GTTAGGTTGATTAACGATGTCTGACAGAATACAAGTCACGATTTTGCGAC
ATTTTTAGTGTGTAACTAGGCTTGTCCTGGGTGCTGAACGGGTGACCTTG
TGGGGGAGGGGGCGGCGTGGTGGCGAAGTGCTTCTATTTTTTCGAAACTT
TTGAATAATACCTTCCTCGTCATAGCCAAAGTGTATCTCGTCTATGGAGT
GCCCCACGAGGAGGAAGGCATTTATTGTCAAACTTGACCGGGCAACCACC
TGCTGTCACAAGCCACATTAAAACAGTCCCGTCCAACTTTAGATGACAGA
GGCTATTGACAGCCTGTCAATAAGACTTTCCCCCATTATTGACAGGCTAA
TTTACGATGAAATGATACATGGTATTCTGCAACAGGATAGGACTTTGACA
CATACAATATGATCTTATATGTAATTTTGGCGATGGTAGCGAATGTCATC
ATTTGAAATAGACTATAGATAAATTATGCCAAGAACAGCATTATTTGCAC
GAGCAATGAGACAAGATGATACTAAATCTGCATGAGGTGTAAGAAATCTT
GTTTTAAAATTATGGATTTCTTGTCTCTGTAAAGCTTAACTCCCAGGAAA
GCCTTCACCTGTTTAAAAATGGCAATATGTTCCATTCCTTCTTGACCATG
GACATGAGATTCTCTGGGGGAATGCATTGAAGAGAGTTCAAATTAAGTTA
ACAAAAAGTTTGGCCAAATAAAAAGTTGCCTTCATTATGAAATCTAGGTG
GTCAGGAAGGTTGAACAAATAACTAAACACAGACACACAGAGTATCATAT
TTTATACCGAATAATAGATTCTTCATTTTTGTTCTTTCACATCTTCGACA
TTAGTATCTGTTTTTTTTATGGGGTCGTTCACAAGAGTCAACTTTCCACT
GTAAGGGAGGGTATCAGGTTACCCGGACTCCCACGTGGTCCCCTGGGAGA
GTTGTAACGTCTTCTAAAAGATCATGATAGTTAGAAAAACGACCTCTTGC
ATGTGTCTCGCCAATTGTAAATGAAATTAGCCAATGTGAATACCTCAAAA
TAAATCCACAGGTCTGGAGATATTAGCTCTTGATAATTCAATGATTTTGA
ACACACGTTACTTGAGTTTTCAATACCAGTTTGGAATAATGACATGCTTC
ACAGATAGGGGCAGGGGATATTTGAATGTTGATGCCGGCGTTAACAAGCC
CTGCAACTTTTAAGGTCATCCACAATGGTGCCAGTTTAATACAAAGTTTG
GTTATATGTTACAATATTGTCCACACCAAAGTTTCAGCAAAGATATACTG
TCAAGAAAATGGTTTGTATTTGTAACAAAGTGGGTTTTCTTCTTATGTAC
GGCACCTCGGAAAGAATTTTGGCACGGATTTACAGTGAAAACCTGCAAAT
GACCGTGAACGCACATTCTTTTTGAATACATCACTTCAAACATGATAGAA
TATGATTCAAAATCTAAAAGAGTCTGGAAATTTTGCACTCATATTTGACC
ATCGTGTATGTTTTAAATTTTGTGGCAACATATGATTACATATGGCATAT
ATTGGCTCATTTTGCAACTGCTTTGTACTAAATTGTAGGGTTAACAGTAT
GGTTGAAACCCTTTTTTTTGAGGGGGGAAACGGACTTGCAGAAAACTATC
TCGCTTGTATTGATTTTCTCAATCTCTCGCTTGTATTGATTTTCTCTTTT
TTGTTCTAGACTATCTGAAACCTTCCATAGATCGTAAAAGTTTCACTGAA
AAAAGACAAAAACATTGCTGTTTTGTGTTTATTTCTGAGCTTTTTTGTTT
GCTAATAACTGTGTATAACTTTGCATGTAAAATTTGTGCCAGCATGCAAT
TTAATATGTAACAAAAAAAATATTCCTAGCACATTAATGCCATGGGTTTA
GGTTCTTACTTATAAGAACCTGAACCTCTGGTTATATATTTTGTGTATTA
TTGCATGTAAAGTTTGTGCCAGCATGCAATTTTGTATTTAACAACAACAA
AAATATTCCTAGCACATTGACATAGATACCATGCAGTGTTCTCGCCAGAA
TTTTTTCACAGCATAGGGGTCAGGTACAGAAGGCCAACTTAACGCGGCGC
AAGCTACGAAGAAATTACCACAGAGTAGGGTGTCTGGCTTGTTCCCCCGG
AAAATTTTTGAATTCATAACCCAATGAGACACTATTTCCTGCATTTTGAG
GGATAAATTTTGTGAAGTCAAGTGCTGGTCATGTGCTATAACCACCGAAT
TTGCTCACTCGGTGGTTTTATTCGGTGGTTATAGCACATGGCCAGGCCTT
AAGACACCATATACACCAAGGAACAGGCGCGTCATTAAGTAAGTTTAAAC
ATTATTATCATGTAGCCTATCCAAACTGATCCATATAAGAGAGACAAAGT
CCTGTATAACACATTTATTTGATACTATACATGTAAATCAATCCATGTAA
TGCAGCATGACAACAAAGTATTTGGCATTATTATATTACCCTTCCAGGAG
GGAATATACTGTCTTCTTCTTCTGCCAAAAACCAAGTAGATGTGGGGTGG
TAACTAATTGCAAAAAGTTATATGGTACGGATGTTATATTTCAGATGTAG
GAACCTTTAGGAAAGGTGACTACACCTGACAATAAATTATGCTAATGACC
TAATTTGCATAATTTATGCATAAACTGCAGATGTCATCTTTGAGATGTAG
GTACCTTTAAGTTTAGGACAGGTGAATGCACCTGGACATAAATTATGCTA
ATGAGGACCTATTTGAGCTGTAAGCACCATTAGGAAAGGTAAAAAAAACT
GGCCATAAATTACGCTAATGAGGGCCTCATTTGCATAATTTAGGCATGTA
CTTATATTTCCCTTACTGTAAAGGCTACAGATGTCATATCTGAGATGTGG
GTACCTTTAGAAAAGGTGAATACACCTGGCCATAAATTATGCTAATGCAG
ACCTCATTTACATAATTTAGGCATGTACTTGTATTTCCCTTACTGTAAAG
GCTACAGATGACATATTTGAGATGTAGGTACCTTTAGAAAAGGTGAATAC
ACCTGGCCATAAATTATGCTAATGCGGACCTCATTTACATTATTTAGGCA
TGTACTTGTATTTCCCTTACTGTAAAGGCTACAGATGTCATATTTGAGAT
GTAGGTCAGAAAACCTGGCCATAAATTATGCTAATGAGGGCCTTATGCAT
AATTTATACATATCCCTTACCATAAAAGCTACAGATGTCATACTTGAGAT
GTAGGTATCTTTAGGAAAGGTGAACACACCTAATGATAAATTATGCTAAT
GCAGACCTCGTTTGCATAAATTATGCAGAAATACCATTACGGTCAATGCT
AAGGCTGTTATTTGAGGTGTAGGTAATGGGAGGGGAATATCCTGCATTTT
CCCGAACATGTTGCTTTTCTAGTTTGCTCTGAAGTTGATACTATAATGAT
AGTGACAGTTCGATTCTCGTCTTAAGTAACTAAAATTTGAAGGTAACAGG
ACCATGACTAGCTCTTATGTGTGAAACATTTTTGTTTCACTGAAGTATGG
CTAAAAGCCAGTCAACCATTTTGACCATTATTTTCTTCGTTCGCCATCTT
TGAAACCGGTTAACGTTTGATCACAATATGAACGAAGTGCCGCAGGAAGA
AAGTGATAAAGAAGTACGTCTTCCCCAGCTTCCCATGACCCGAAAACTGA
CTCTAAGTCTGCGCCTGACAGTTCTTCGACGAAAAACTGTGGTACTCTGT
CCATATCGATCAAACGGGTAATGGCGGACGAAATTATTGAGGACGGCGGG
GTTCCACTCTCGGTGGGGACGCAAAAATTTTTGTTTTCAGTCCTTCCGTT
TGAATTTCACTTGAATTGAAATTTGTTCCTTTTTTCATGTATCTTAAGAA
GATTTTGTGAATTTTAAGACGTTAAAGATTTTTAAACAAGGTTAAGAAAA
AGATTCATCAAAAAGATCCCTCCCTCTACATAATGGAAGGGTCGAACGGG
TGTGTTATAACACATGGGCAATGGAGGCTTCTGATTGGTCGACGCCATCT
GGCTATGTGATAATGTCAATTATAACATTCTCCTGTGCTGCAAATTTCAA
ATGGACAAATTTTTATTTGTTCTATTTACTCTTCACTTGCAGAAGAAACT
TGATGGCGACAACAAAGAGCTGCTGTAATGATGTTAGCAGTGGTGAAGTT
GGTGGGTTTGCCCACACACTTCAATGGTGTGAGGAGTGCAGCAAGCAGTT
CAGTAGGCGGAGTGCTCTAGAAACTCACATGCACACAGGTGAGAAACCCT
ACAGGTGTGAGAAGTGCAGCAGGCAGTTCAATAGGCTAGCTGTTCTAAAG
ACTCACATGCGGACTCACACAGCTGAGAAACTCAACAGGTGTGACTGTGA
GGAGTGCAGCAGGCAGTTCAGTCTACCTTGTAGGCAGAAGAAACATGTGC
GGACTCACACAGGGGGGAAACCCTACAGGTGTAAGAAGTGCAGCAGGCAT
TTCAGTCAGCTAGGTAATCTGAAGAAACACATGCGGACTCACACAGGTGA
GAAACCCTACAGGTGTGAGGAGTGTAGAAAGCATTTCAGGCAGCAGTGTG
ATCTGAAGAAACACATGCGGACTCACACAGGTGAGAAACCCTACAGGTGT
GAGGAGTGTAGAAAGCATTTCAGGCAGCAGTGTGATCTGAAGAAACACAT
GCGGTCTCACACAGGTGAGAAACCCTACAGGTGTGAGGAATGCGGAAGGC
AGTTCAGTAGGCATGATGATTTGAGGAGACACATTATGACTCACACAGGT
GAGAAACCCTACAGGTGTGAGAAGTGCAGCAGACAGTTCCGTCTACGTTC
TAGTCTGAAGAAACATGTGCAGACTCACACAGGGGAGAAACCCTACAAGT
GTGAGGAGTGCAGCAGGCATTTCAATGAACTACATACTCTGAAGTCTCAC
ATACGGACTCACACAGGTGAGAAACCCTACCAGTGTGAGGAGTGCAGAAA
GCATTTCAGGCAGCAGTGTGATCTGAAGAAACACATGCGATCTCACACAG
GTGAAAAACCCTATAGGTGTGAGGAATGCGGAAGGCAGTTCAGTAGGCTG
GATGATTTGAGGAGACACATTATGACTCACACAG Coding sequence (CDS) from alignment at Sc0000038:2282477..2287810- >transcript:BL78166_cuf0 ID=transcript:BL78166_cuf0|Name=transcript:BL78166_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=981bp|location=Sequence derived from alignment at Sc0000038:2282477..2287810- (Branchiostoma lanceolatum)
ATGGCGACAACAAAGAGCTGCTGTAATGATGTTAGCAGTGGTGAAGTTGG
TGGGTTTGCCCACACACTTCAATGGTGTGAGGAGTGCAGCAAGCAGTTCA
GTAGGCGGAGTGCTCTAGAAACTCACATGCACACAGGTGAGAAACCCTAC
AGGTGTGAGAAGTGCAGCAGGCAGTTCAATAGGCTAGCTGTTCTAAAGAC
TCACATGCGGACTCACACAGCTGAGAAACTCAACAGGTGTGACTGTGAGG
AGTGCAGCAGGCAGTTCAGTCTACCTTGTAGGCAGAAGAAACATGTGCGG
ACTCACACAGGGGGGAAACCCTACAGGTGTAAGAAGTGCAGCAGGCATTT
CAGTCAGCTAGGTAATCTGAAGAAACACATGCGGACTCACACAGGTGAGA
AACCCTACAGGTGTGAGGAGTGTAGAAAGCATTTCAGGCAGCAGTGTGAT
CTGAAGAAACACATGCGGACTCACACAGGTGAGAAACCCTACAGGTGTGA
GGAGTGTAGAAAGCATTTCAGGCAGCAGTGTGATCTGAAGAAACACATGC
GGTCTCACACAGGTGAGAAACCCTACAGGTGTGAGGAATGCGGAAGGCAG
TTCAGTAGGCATGATGATTTGAGGAGACACATTATGACTCACACAGGTGA
GAAACCCTACAGGTGTGAGAAGTGCAGCAGACAGTTCCGTCTACGTTCTA
GTCTGAAGAAACATGTGCAGACTCACACAGGGGAGAAACCCTACAAGTGT
GAGGAGTGCAGCAGGCATTTCAATGAACTACATACTCTGAAGTCTCACAT
ACGGACTCACACAGGTGAGAAACCCTACCAGTGTGAGGAGTGCAGAAAGC
ATTTCAGGCAGCAGTGTGATCTGAAGAAACACATGCGATCTCACACAGGT
GAAAAACCCTATAGGTGTGAGGAATGCGGAAGGCAGTTCAGTAGGCTGGA
TGATTTGAGGAGACACATTATGACTCACACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000038 | genome | Sc0000038:2282477..2287810 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78166_cuf0 |
| Biotype | protein_coding |
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