transcript:BL78641_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78641_cuf0
Unique Nametranscript:BL78641_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78641_cuf0

>transcript:BL78641_cuf0-protein ID=transcript:BL78641_cuf0-protein|Name=transcript:BL78641_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
VVRRYSSFGEIWVALKRAGVCRWSDPALAAEAVQGAALAFQSVDHVHGGH
RLALGVLGVGHRVADHILQEHLQNASGLLVDQPGDALHAATTGKTTDSRL
GDTLDVVAKNLAVTLSASLSEPLASFAASRHDEYDILVDTERE
Run BLAST on NCBI

mRNA from alignment at Sc0000248:399652..400692+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78641_cuf0 ID=transcript:BL78641_cuf0|Name=transcript:BL78641_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1041bp|location=Sequence derived from alignment at Sc0000248:399652..400692+ (Branchiostoma lanceolatum)
GTTGTGAGAAGATACAGCTCTTTTGGGGAGATTTGGGTGGCCCTGAAAAG
GGCCGGGGTTTGTCGATGGTCAGATCCTGCTTTAGCCGCCGAAGCCGTAC
AGGGTGCGGCCTTGGCGTTTCAGAGCGTAGACCACGTCCATGGCGGTCAC
CGTCTTGCGCTTGGCGTGCTCGGTGTAGGTCACCGCGTCGCGGATCACAT
TCTCCAGGAACACCTTCAGAACGCCTCGGGTCTCCTCGTAGATCAACCCG
GAGATGCGCTTCACGCCGCCACGACGGGCAAGACGACGGATAGCCGGCTT
GGTGATACCCTGGATGTTGTCGCGAAGAACCTTGCGGTGACGCTTAGCGC
CTCCCTTTCCGAGCCCCTTGCCTCCTTTGCCGCGTCCAGACATGATGAAT
ACGATATTCTTGTCGATACAGAACGAGAATGAATTATCGGGCCTGACGGA
GCCGGATTAATTGAAGAAGACCTTTATTGTATGTTCGTGCCCCGAGGGGC
TAGATACAGGTCGTTTAACACAAACCTAACTAACATCTAAGTGACATATA
CAGTGAAATATGTACAGTACATTGTGTAAACATACATGGTAGAAGAAAAG
GATAAGCTAAGCTAATCTAGTAAAGTCAACTTCTTCTCGCTTCTTTGTAC
ATGTGTAGATGTATGAACAGATCATGTTTCTTATACAAGGGTTATCTAGA
CGCAACAAAAATATGAATTTATCCGTTGCGTTTAAATATTCAAAGTATGG
GAATTTCTCATTAATACATTTGAAAAGAACATTTCTTTCTATATCGTAAA
GTTTACAATCTAAAATGAAGTGCCGCTCATCTTCTATTTGATTTAACTCA
CAAAATTGGCAAATTCTATGTTCTAGAAGCGTGCGGTTGTGCCTTCCTGT
TTCAATATGTAATTTGTGACAACTAATCCTGAATTTAGTGACAGCTACTC
TATGCTGTATGTTACTTATAGATAAATACTCTTCTTCCTTATACAGGGAC
TTCAACAGTCGGTAAGTTCGTAATTTGTTGCTATAAGATTT

Coding sequence (CDS) from alignment at Sc0000248:399652..400692+

>transcript:BL78641_cuf0 ID=transcript:BL78641_cuf0|Name=transcript:BL78641_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=432bp|location=Sequence derived from alignment at Sc0000248:399652..400692+ (Branchiostoma lanceolatum)
GTTGTGAGAAGATACAGCTCTTTTGGGGAGATTTGGGTGGCCCTGAAAAG
GGCCGGGGTTTGTCGATGGTCAGATCCTGCTTTAGCCGCCGAAGCCGTAC
AGGGTGCGGCCTTGGCGTTTCAGAGCGTAGACCACGTCCATGGCGGTCAC
CGTCTTGCGCTTGGCGTGCTCGGTGTAGGTCACCGCGTCGCGGATCACAT
TCTCCAGGAACACCTTCAGAACGCCTCGGGTCTCCTCGTAGATCAACCCG
GAGATGCGCTTCACGCCGCCACGACGGGCAAGACGACGGATAGCCGGCTT
GGTGATACCCTGGATGTTGTCGCGAAGAACCTTGCGGTGACGCTTAGCGC
CTCCCTTTCCGAGCCCCTTGCCTCCTTTGCCGCGTCCAGACATGATGAAT
ACGATATTCTTGTCGATACAGAACGAGAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78641gene:BL78641Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78641_cuf0-E1BL78641_cuf0-E1-1564476830-408191Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78641_cuf0transcript:BL78641_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000248genomeSc0000248:399652..400692 +
Properties
Property NameValue
Transcript idBL78641_cuf0
Biotypeprotein_coding