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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78679_cuf4 >transcript:BL78679_cuf4-protein ID=transcript:BL78679_cuf4-protein|Name=transcript:BL78679_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=169bp
QRLRCLIGNLVNSFCLYHALYMSRRVFLMFQGPPPPFTITCQHDRVIHDA
RRAAKNMQVKRVAILKEFCREKNGSFAGAFLSQKLLHQLIVVDRIKTIYC
YIPKTGCTTTKFAMYNLQHGTNESNADHQLGWIHKQHFKLLSSYSNRDAD
MRLATYNKLMVVRDPLERY Run BLAST on NCBI mRNA from alignment at Sc0000435:178781..180646+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78679_cuf4 ID=transcript:BL78679_cuf4|Name=transcript:BL78679_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1866bp|location=Sequence derived from alignment at Sc0000435:178781..180646+ (Branchiostoma lanceolatum)
GTCAAAGGTTAAGGTGCCTAATCGGTAATTTAGTAAACAGTTTTTGTCTA
TACCATGCTTTATACATGTCCAGACGTGTTTTTCTTATGTTTCAGGGGCC
GCCTCCACCCTTTACTATTACCTGCCAACATGATAGGGTCATACATGGTA
TTTATACAATTGTATCCTGGTGTATGTTGTAGGTCTTATCAGCCAGGTCT
TCGTGTCCAACATATCCCGGCCACCTGACAGCGACAAAACAAATAAAAGA
CCGGCATTCTCTGGGACGACCGGACCAGCCAATATTTACACCCAGCCACC
AGGTATAGTAAAGAATAGCACGAATAAAAGACCGGCACTCTCCGGAACGA
CCGGACCAGCCAATACTTCCACCCAGACACCAGGTATAGTAAAGAATAGC
ACGAATAAAAGACCGGCACTCTCCGGAACGACCGGACCAGCCAATACTTC
CACCCAGACACCAGGTATAGTAAAGAATAGCACGAATAAAAGACCGGCAT
TCTCCGGAACGACCGGACCAGCCAATACTTCCACCCAGCCACCAGGTATA
GTAAAGAATAGCACGAATAAAAGACCGGCACTCTCCGGAACGACCGGACC
AGCTGCCAATACTTACACCCAGCCACTAGGTATAGTAAAGAATAGCACGA
ATAAAAGACCGGCACTCTCCGGAACGACCGGACCAGCCAATACTTCCACC
CAGCCACTAGGTATAGTAAAGAATAGCACGAATAAAAGAGCGGCATTCTA
CGAGGCGACAAGACCAGCCAATACTTCCACCCAGCCACCAGGTATAGTAA
GACTTGCCCACTATATCATTACAATCCATTAATAATCCCTTTGTCAATGC
AAACACACACACACACACACACAAACACAAACACACACACACACACACAC
AAGCACATACACACACACACACACACAAACAAACAAACACACACATATAC
ATACATACACATACAGATACAAAAGAGCTGTCACACACACACACACACAC
ACACACACACACACACACACACACACACACTCACACACACTGTCACACAC
GTCGTAAATGATAACTCCGATCAAGGAGGTAAAAATCGACTTACAAACGA
TTTCTGTTTTTCCTTAACCTCCTGTACAGATGCCAGACGCGCGGCCAAAA
ATATGCAGGTGAAGAGAGTCGCCATTTTGAAGGAATTCTGCAGGGAAAAA
AACGGCTCGTTTGCAGGGGTTAGTTACCTTCGCCAAGAAGGTTATCTTTT
CGGGTTTCTGTGTTTGCGCCTTTGAGTCTTTGTGTGTGTTTGTGAACAGT
GTAAAGTCGCGCATGGATCTTGAGGACAATTGGTATGTGTTCGGTTGTCA
ACCTAACGACATGTGGATGGGTGTCGGCAAAGGGCACCTTTTGGTTAGGG
GCTCATTAGAGGCTAATCNCTCATTAGCGGCTAATCATGGTGCTGCAGGG
AAGCTGCATGTCTGTTATTTCTGCAAGTTCTAGAAATGCCTCTTATAGAG
ATATTCGAAGTGTAGTTCTGTTTGATTCACGACCACGCATATTTCCTACA
TCATACGACATAGCTACAGCTTTTATTTGCTTTTCATTTTCAGGCGTTCC
TGTCGCAAAAATTGCTCCATCAACTTATCGTTGTCGACAGAATCAAAACC
ATTTACTGTTACATCCCTAAAACTGGATGTACAACAACAAAGTTTGCAAT
GTACAATCTCCAACATGGCACAAATGAGAGCAATGCAGATCACCAACTGG
GATGGATTCACAAGCAACACTTTAAGTTGCTGAGCAGCTACAGTAACAGA
GATGCGGACATGCGTCTTGCAACCTACAACAAACTCATGGTCGTCCGCGA
CCCTTTGGAAAGGTAT Coding sequence (CDS) from alignment at Sc0000435:178781..180646+ >transcript:BL78679_cuf4 ID=transcript:BL78679_cuf4|Name=transcript:BL78679_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1521bp|location=Sequence derived from alignment at Sc0000435:178781..180646+ (Branchiostoma lanceolatum)
CAAAGGTTAAGGTGCCTAATCGGTAATTTAGTAAACAGTTTTTGTCTATA
CCATGCTTTATACATGTCCAGACGTGTTTTTCTTATGTTTCAGGGGCCGC
CTCCACCCTTTACTATTACCTGCCAACATGATAGGGTCATACATGATGCC
AGACGCGCGGCCAAAAATATGCAGGTGAAGAGAGTCGCCATTTTGAAGGA
ATTCTGCAGGGAAAAAAACGGCTCGTTTGCAGGGGCGTTCCTGTCGCAAA
AATTGCTCCATCAACTTATCGTTGTCGACAGAATCAAAACCATTTACTGT
TACATCCCTAAAACTGGATGTACAACAACAAAGTTTGCAATGTACAATCT
CCAACATGGCACAAATGAGAGCAATGCAGATCACCAACTGGGATGGATTC
ACAAGCAACACTTTAAGTTGCTGAGCAGCTACAGTAACAGAGATGCGGAC
ATGCGTCTTGCAACCTACAACAAACTCATGGTCGTCCGCGACCCTTTGGA
AAGGTATCAAAGGTTAAGGTGCCTAATCGGTAATTTAGTAAACAGTTTTT
GTCTATACCATGCTTTATACATGTCCAGACGTGTTTTTCTTATGTTTCAG
GGGCCGCCTCCACCCTTTACTATTACCTGCCAACATGATAGGGTCATACA
TGATGCCAGACGCGCGGCCAAAAATATGCAGGTGAAGAGAGTCGCCATTT
TGAAGGAATTCTGCAGGGAAAAAAACGGCTCGTTTGCAGGGGCGTTCCTG
TCGCAAAAATTGCTCCATCAACTTATCGTTGTCGACAGAATCAAAACCAT
TTACTGTTACATCCCTAAAACTGGATGTACAACAACAAAGTTTGCAATGT
ACAATCTCCAACATGGCACAAATGAGAGCAATGCAGATCACCAACTGGGA
TGGATTCACAAGCAACACTTTAAGTTGCTGAGCAGCTACAGTAACAGAGA
TGCGGACATGCGTCTTGCAACCTACAACAAACTCATGGTCGTCCGCGACC
CTTTGGAAAGGTATCAAAGGTTAAGGTGCCTAATCGGTAATTTAGTAAAC
AGTTTTTGTCTATACCATGCTTTATACATGTCCAGACGTGTTTTTCTTAT
GTTTCAGGGGCCGCCTCCACCCTTTACTATTACCTGCCAACATGATAGGG
TCATACATGATGCCAGACGCGCGGCCAAAAATATGCAGGTGAAGAGAGTC
GCCATTTTGAAGGAATTCTGCAGGGAAAAAAACGGCTCGTTTGCAGGGGC
GTTCCTGTCGCAAAAATTGCTCCATCAACTTATCGTTGTCGACAGAATCA
AAACCATTTACTGTTACATCCCTAAAACTGGATGTACAACAACAAAGTTT
GCAATGTACAATCTCCAACATGGCACAAATGAGAGCAATGCAGATCACCA
ACTGGGATGGATTCACAAGCAACACTTTAAGTTGCTGAGCAGCTACAGTA
ACAGAGATGCGGACATGCGTCTTGCAACCTACAACAAACTCATGGTCGTC
CGCGACCCTTTGGAAAGGTAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000435 | genome | Sc0000435:178781..180646 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78679_cuf4 |
| Biotype | protein_coding |
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