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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78706_cuf0 >transcript:BL78706_cuf0-protein ID=transcript:BL78706_cuf0-protein|Name=transcript:BL78706_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=212bp
MAAPRKQVHILCFRHDTCHPTTQILCLELPTTCPLCSRPIQALLHPPFSV
PSPFVDGHSRPFSVVVKPTRGTFLSDYRRSDDLHVGVTDSNGVVFNFDET
GIHRDTAGWEECIAVRLLQDKDFDIRECWDKSLNDYSLYWRPESYDESDN
NCFDFVLGFLRHVGYEYVNAEVLRSREDFCKAMVIPQGVKAGKYIDLYRR
LQREGFVVDSTR Run BLAST on NCBI mRNA from alignment at Sc0000047:234696..236487- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78706_cuf0 ID=transcript:BL78706_cuf0|Name=transcript:BL78706_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1792bp|location=Sequence derived from alignment at Sc0000047:234696..236487- (Branchiostoma lanceolatum)
ATACTCCATGCGGATACATAACCGGAAGTAGAACCAAGTCGTCGACTGTG
CAGTTTTGCAGCAACTACTTGTACAAGGAAATGTCAAGGTACTTTAGACA
TCTTTGTGAAGTTAACCGTATATTCAGGAATTTTACAAGAGCCACGGTGG
GTCGGTCAGTTTATGTAGCCGCTGTACAACTTAACTACATGTTCATTTCA
TTAGCAAATGCCCCATCCCATGCAAAAGAATGAAACAAAAACGTTTCAAA
AATTAAATGAGTGAGCTAATACATGTTGTAACATTAAGTGCATGCACATT
ATATCATAAGATAATGTGATCTGGAGCCAGTCAAGGCACAACTTGTGAAC
TGTCACTCTGTAATGATGATGTTTGTCTTCATTAATTTTTCCCTTGTTTC
CAGCTATGGCAGCACCCAGGAAGCAGGTCCACATCCTCTGCTTCAGGCAT
GACACCTGCCACCCAACAACCCAGATCTTGTGCTTGGAACTCCCCACCAC
CTGTCCTCTGTGTAGCAGACCCATTCAAGCTCTCCTGCACCCCCCGTTCT
CTGTCCCAAGCCCTTTTGTAGACGGTCACTCTCGTCCCTTCAGCGTGGTG
GTGAAACCAACCCGTGGAACGTTCCTGTCAGACTACCGCAGATCAGACGA
TTTACATGTCGGGGTGACAGACTCGAACGGAGTAGTGTTTAACTTTGATG
AAACAGGCATTCACAGAGATACAGCAGGCTGGGAGGAATGCATTGCAGTC
CGACTTCTTCAAGACAAGGACTTTGACATTCGAGAATGCTGGGATAAAAG
TTTGAACGACTATAGTCTGTACTGGAGGCCTGAGTCATATGATGAGAGTG
ACAACAACTGTTTTGACTTTGTACTGGGGTTCTTGAGACACGTAGGATAT
GAGTATGTTAATGCAGAAGTTTTAAGAAGTAGAGAAGATTTCTGTAAGGC
AATGGTCATTCCTCAAGGTGTTAAGGCTGGGAAGTACATTGATCTGTACC
GAAGATTACAACGAGAAGGTTTTGTTGTTGATAGCACAAGGTGACCCAAG
AGCTTGACTGCCATGTTTGTGTCTTAATGTAACAGTATTTCACCACATTG
TAATTGTCCTACATTGTGACATGCTGCAATGCATCATCAGTTTTAAACAA
AGAATGTTCATCTTAGCCAGCAGCATGCTTGTCGTAATCAGTCGTGAGGC
ATATCAGACTGCTGAAAGGTGAATATGACACCATGTAGAGACATGCATTA
TGCAGAGTACTACCACTCCCTTTGTCCTTTGTGGTACAACAGACAGTAGT
GAGGGCATTAGTGTGCCTGTCCTTGGTGCTGAAAGGATGTCTTGTTGTGA
AGGTAATGATGACATGATTACAGAGGTGAAGCACTTATCTCTGAACACAG
GTTGGATGGGAAATTTATGGCCTTCTTCTGACTTGCCCTGTTTTCTAACA
GCCTGCCAAGCCAGAAGAAGGTCACAATCTTTCCATTCAACCTCTGATTG
GAGAGTATGGGTATATGTATCGCACGTGTGTCCCAATATCTATGACACCG
ATTATCACAGCAACTAGTAGTAGACACCAGCACACAGACACCACCAGACA
GTCACTGACGACTTGAATGGTAGTAATAAATGATCACAGTACAAAACAGA
GGAAAGTCATGTTTGTTTTTATTTCCTATATCATATGTATACTATATCAG
TTCGTTGGCTCTTGGTTTCGAGCTGCGTCCTATGGTGTAGCAGATGCCAT
ATTAGAAATGGCACAGATACGATGTCGGTTGATCTGACTGTG Coding sequence (CDS) from alignment at Sc0000047:234696..236487- >transcript:BL78706_cuf0 ID=transcript:BL78706_cuf0|Name=transcript:BL78706_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=639bp|location=Sequence derived from alignment at Sc0000047:234696..236487- (Branchiostoma lanceolatum)
ATGGCAGCACCCAGGAAGCAGGTCCACATCCTCTGCTTCAGGCATGACAC
CTGCCACCCAACAACCCAGATCTTGTGCTTGGAACTCCCCACCACCTGTC
CTCTGTGTAGCAGACCCATTCAAGCTCTCCTGCACCCCCCGTTCTCTGTC
CCAAGCCCTTTTGTAGACGGTCACTCTCGTCCCTTCAGCGTGGTGGTGAA
ACCAACCCGTGGAACGTTCCTGTCAGACTACCGCAGATCAGACGATTTAC
ATGTCGGGGTGACAGACTCGAACGGAGTAGTGTTTAACTTTGATGAAACA
GGCATTCACAGAGATACAGCAGGCTGGGAGGAATGCATTGCAGTCCGACT
TCTTCAAGACAAGGACTTTGACATTCGAGAATGCTGGGATAAAAGTTTGA
ACGACTATAGTCTGTACTGGAGGCCTGAGTCATATGATGAGAGTGACAAC
AACTGTTTTGACTTTGTACTGGGGTTCTTGAGACACGTAGGATATGAGTA
TGTTAATGCAGAAGTTTTAAGAAGTAGAGAAGATTTCTGTAAGGCAATGG
TCATTCCTCAAGGTGTTAAGGCTGGGAAGTACATTGATCTGTACCGAAGA
TTACAACGAGAAGGTTTTGTTGTTGATAGCACAAGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000047 | genome | Sc0000047:234696..236487 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78706_cuf0 |
| Biotype | protein_coding |
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