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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78708_cuf0 >transcript:BL78708_cuf0-protein ID=transcript:BL78708_cuf0-protein|Name=transcript:BL78708_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=118bp
MIWPVVRDLLSFYVTMSCASNRRVTKEPHASAVCPRPYQDESYLHGFLGT
VSDLQRAGVLQDIILEVEGRRFHCHRLVLSAASPYFRAMFTSDMAESRQK
TVVFQVRLTCVVVRDREL Run BLAST on NCBI mRNA from alignment at Sc0000346:204607..207094- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78708_cuf0 ID=transcript:BL78708_cuf0|Name=transcript:BL78708_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2488bp|location=Sequence derived from alignment at Sc0000346:204607..207094- (Branchiostoma lanceolatum)
TAATGCTGAAACGGTAGCACGGAAACCCCCATGCAGTGCGAAATCTACGA
CAGAATTTAGCACAAGAAGGCTTCCTGAGGGCCAACTTTGACTCTGCAAA
TCTCGTATGAAAATTATATTTGGATCTCCAAGTGTATTGCAGGAGCTTGG
ACAGCTTCTTGACATCACCAGGACACATTTATATGCATGATTTGGCCTGT
CGTGCGAGATCTATTGAGTTTTTACGTGACCATGTCTTGTGCCTCAAATC
GGCGCGTAACAAAAGAACCCCACGCCAGCGCAGTTTGTCCTCGTCCCTAC
CAAGACGAGAGCTATCTGCATGGGTTTCTTGGAACTGTAAGTGACTTACA
GAGGGCTGGGGTTCTGCAGGATATCATTCTTGAGGTCGAGGGCCGGAGGT
TTCACTGCCATCGGCTTGTTCTGTCCGCGGCCAGCCCCTACTTCAGGGCC
ATGTTTACAAGTGACATGGCGGAAAGTCGGCAGAAGACGGTTGTTTTTCA
GGTACGGTTGACGTGCGTTGTAGTCAGAGACAGAGAACTTTGAAAGAGTT
TAATTATTAAATAGAACATGAAGAGCCACGAAATGTTACATTTTCCTGTA
AACAAATTATGTTTTCCCTTGCATGCCCCCCTCCCCGCTCACTGATATCT
TTTTATCTTCGCCGAGTACTATAGTACTCAGGGTAGATTATGTTTTCGGT
TGAGCCAGCTGTTTGGTGGGTCTGTATGTATGTCAAGAGCATAACTCAAG
AAACCTTTGATGAATCTTTATGATTTTTGGTAGGTGTGTAGTGGTTGTGC
AAAGGAAGGTCAAGTTCAAAAATGGTTTACCATGCGTTTTTCAACAGTAC
TGCAGCGGACTTTTAATTTTCGTGCGTTTGTATGTAGGCAAAAAAAGTGA
CGGAAACGTTGATGGATCTTCATGATTTTTTGCAGGTGTGTAGATGTTGT
AGAAACGGAGGTCAAGTTCAAAAATGGTTTTCCTGGCATTTTCCGTCGGT
ACTGCAGCGGGCTTTGTGTGGATGTGTATTTTCTTGTGGACAACATAACT
CAAGAAGCTGTTCATGGATCTGTATGATATCTAGTGGATGGGTAGGGTTT
ACGGAAAGGAAGGTCAAGTTCGATAATCGGCCTTCTAGCGAGTACCTAAG
GTACTGCAGCGGAGCTTCAAAATTTACTGGCATATTTTCTGAAAGTGCTA
TGGTCATGATATTTGTGTGGTAGATAGTTCATGCCACAAGAAGTAAGTTC
TGTAAGTTTGGGCCCCCTAGCGGCTTGTTCAGAACTGCAGTGGGTGTTTT
TGTTTTGACATTCGGACACGTATTACTTGAGAAGGGGTGAAGAGATTGTC
GTGAAGTTTTGTATGTAGAGAGCTCAGATGGTGCTTTGCACAATCGATGT
CTAATTATAAAAAACAGGGCCTAATCTGCATAATTAGTAAGGATAATTGT
AAATCCATTACATTCCATAATGGGGCATGTGACAGGGTTCCCGAAACAGG
CCAGCAGAAGGCCTTGCCTAGAAGCATAAATAAACAGATGGGGTACATAA
ATAAACAAATGGGGCAGTCTCGCTACAATTCAAGCAGATGTGTGGGTCCG
GTTGGTTTTTAAAGTGTTCAGTTTCGACATTTTTGTCCAACACACGGGTT
GAGACATAACGGAAAGGGAACAAAATAGAAAGCCTTACAAAACACCTAAA
AACATGTGAATAACCAGCCGGACCCACTCCTCTGCTCAGAGAGTACACTG
CACCAAAACTGCACCACTGCTAGGTAGTACCTAGCACCGTATGGAAAAGT
AACATGTACTATGTCTTGCAAAATGTGTATGATATGGAATAAAGATTTAT
TCTATTCATATATATTGACTGTACCATTTTTTGATGACCAGTTATAACAT
TTAACAGCACACTATACACATATACTAGTCCTGTACCACCAAATGATTTT
TATCCCTATCTAGACTGGACTCATTCTCCCCCCCCCCCATCATAACTTTC
AAACGGTATGGTGTATGATCAAGTTTGCAGGGGGTTATAAGCATGTAAAT
ATTAATCACTCTCCACAAAAAACCTTGTTACAATATGAAATTGGAAATGC
CAGTGTCTTGATGTAGTTCTACAATGTTTAACTGCATTTGTTGTATCACT
TCGGCCGAAACAAATGAGAATCCCCCCTACCTAGCCAATTTCTTCAGAAC
CGTAATCGGAAACACATCATTAATTTTCACAGGCTTTAGTGTATTCCGCG
TTACATCTGTCAGTGGGCCCCGCGATTATGGTTCCATTTCCGAAGGGAAA
ATGCAAATGCTTATGATCAGCAATGATTTTCGTTCTATGCATACAACGGA
ACATGGCCTTTTGTCAACACAGTTAATCAGCACATTGTACTTCTTTGTTC
CATTTATTGTGCTTGTATGATGTATATCTGTATAATTACAATATGAAGTT
GAAACTGCTAGTGTGTTGATGCTAAATGCGTCGACTCA Coding sequence (CDS) from alignment at Sc0000346:204607..207094- >transcript:BL78708_cuf0 ID=transcript:BL78708_cuf0|Name=transcript:BL78708_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=357bp|location=Sequence derived from alignment at Sc0000346:204607..207094- (Branchiostoma lanceolatum)
ATGATTTGGCCTGTCGTGCGAGATCTATTGAGTTTTTACGTGACCATGTC
TTGTGCCTCAAATCGGCGCGTAACAAAAGAACCCCACGCCAGCGCAGTTT
GTCCTCGTCCCTACCAAGACGAGAGCTATCTGCATGGGTTTCTTGGAACT
GTAAGTGACTTACAGAGGGCTGGGGTTCTGCAGGATATCATTCTTGAGGT
CGAGGGCCGGAGGTTTCACTGCCATCGGCTTGTTCTGTCCGCGGCCAGCC
CCTACTTCAGGGCCATGTTTACAAGTGACATGGCGGAAAGTCGGCAGAAG
ACGGTTGTTTTTCAGGTACGGTTGACGTGCGTTGTAGTCAGAGACAGAGA
ACTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000346 | genome | Sc0000346:204607..207094 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78708_cuf0 |
| Biotype | protein_coding |
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