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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79020_cuf0 >transcript:BL79020_cuf0-protein ID=transcript:BL79020_cuf0-protein|Name=transcript:BL79020_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=580bp
EQVTSQPASLDTSRQEWAESIWSIASVQSVASTMSSGSVLSSDSGYASAG
SHMTLSEGRKRAPRYKAEAEAAISRITQGMENLDREIAATKENCKEVEKE
IQQHYKKLRSKLKQEEQEMITKVQKCNGDRKGELSQEKKRLQTELGKTKE
DVTFCEKILDCKDDKEFFTLKQQIEERFQKLSLQQTGNRSLESHTRVTFR
PCSLSQVSGGSLSVLDIEGPVVESLYCSVTVTPDTVGLTSGNVAPQVEVT
SPQGKTTLIQTTAHTSPPLAAGKGQTSRVRRVWGGEWRPQTSGKHTLGVC
MGGKKDLGSLTVDVGSNNPVLRFGQWGRQQGQFHNPFDVAVRGDRLYVAD
YANHHVQAFDLRGNFCHTFSTTFPIGLTVQTDGTIVVNSGNEVMKFSPSG
ELLHKFPLGEYCSRPWGLAVQRGGRVVVADWGKHSIFLFEADGTLVKQVG
GQGQGEGKFDMPCFVCVDKEDNIIVADTGNHSVQVFDKNLNFKQKFGQEG
RQPQDMLCPTGVSADSRGNIVLGSSGDGKLQVFRPDGTWVANISSDGDKL
KGPLGVAVTEDGHVFVADSDDNCIRKYRYM Run BLAST on NCBI mRNA from alignment at xpSc0039671:217130..219151+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79020_cuf0 ID=transcript:BL79020_cuf0|Name=transcript:BL79020_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2022bp|location=Sequence derived from alignment at xpSc0039671:217130..219151+ (Branchiostoma lanceolatum)
GAACAGGTGACGTCACAGCCGGCATCACTGGACACTTCCAGACAAGAATG
GGCAGAAAGCATTTGGTCCATTGCAAGCGTCCAGTCAGTGGCAAGCACCA
TGTCGTCAGGAAGCGTTCTGTCATCAGATTCAGGCTACGCATCAGCTGGG
AGCCACATGACCTTGTCTGAAGGTGAAACCACTTTCTCTATTTGAGAAAA
GCAGATGATCAGCTTTCAGGATGGCTTACCATTCAGACTTTAATCATCAT
TGAGCGTGTGAAAGTAAGAATATATGTGATAAATGTTTATAAGAATATGC
TTTGTGATATCATTGCCTGTCATCTAAGATTTCGCATTTAATGGATCATA
CAATAGTGGGGCAAACTTCGTGACTACATGATTGTATACTGTCCATCTTT
TCCTTTGGTAGGAAGAAAACGAGCACCACGATACAAAGCAGAAGCAGAAG
CAGCCATCTCCAGGATTACCCAAGGAATGGAGAACCTTGACAGGGAAATC
GCAGCTACAAAGGAGAACTGTAAGGAAGTAGAGAAGGAAATCCAGCAACA
CTACAAGAAGTTGAGGTCAAAACTAAAGCAAGAAGAGCAGGAAATGATCA
CTAAGGTGCAAAAATGCAATGGAGACAGGAAAGGGGAACTGAGTCAGGAA
AAAAAGAGATTGCAAACAGAGCTTGGAAAGACCAAGGAAGATGTTACATT
CTGTGAAAAGATTTTAGACTGTAAAGATGACAAAGAATTTTTCACCTTAA
AGCAACAAATTGAAGAAAGGTTTCAGAAACTATCCTTGCAGCAAACAGGC
AACAGGAGTTTGGAGAGTCATACAAGAGTGACCTTCAGACCCTGTAGCTT
ATCCCAGGTTTCTGGAGGTTCCTTGTCTGTGCTTGATATAGAAGGTCCAG
TAGTGGAGAGTCTGTACTGCTCTGTTACAGTCACACCTGATACTGTGGGT
CTAACAAGTGGGAATGTTGCACCACAGGTAGAGGTGACCTCCCCTCAGGG
CAAAACCACCCTGATACAGACTACAGCACACACTAGTCCCCCACTAGCTG
CAGGGAAGGGCCAAACCAGCAGAGTTAGGAGGGTCTGGGGTGGAGAGTGG
AGACCTCAGACTTCAGGGAAACACACACTGGGGGTCTGTATGGGGGGTAA
GAAGGACCTGGGTTCTCTCACTGTAGATGTGGGCAGTAACAACCCTGTAC
TGAGGTTTGGGCAGTGGGGCCGCCAGCAGGGGCAGTTTCACAATCCTTTT
GATGTAGCAGTCAGGGGGGACAGGCTGTATGTGGCTGATTATGCTAACCA
TCATGTTCAGGCGTTTGATCTGAGAGGGAACTTTTGTCATACCTTTTCTA
CTACTTTCCCTATAGGACTTACAGTTCAGACCGATGGCACCATAGTGGTG
AACTCTGGGAATGAAGTGATGAAATTTTCCCCATCAGGAGAATTGCTGCA
CAAATTTCCTCTGGGTGAATATTGCTCACGGCCCTGGGGCCTGGCAGTAC
AGAGGGGTGGGAGGGTTGTTGTAGCTGATTGGGGCAAACACAGCATCTTC
CTGTTTGAGGCAGATGGGACACTGGTGAAACAGGTGGGAGGGCAGGGACA
GGGGGAGGGGAAGTTTGACATGCCATGTTTTGTCTGTGTGGATAAAGAAG
ACAACATCATTGTGGCAGATACAGGCAACCACAGTGTTCAGGTGTTTGAC
AAGAATCTGAACTTCAAACAAAAGTTTGGTCAGGAGGGCAGACAGCCACA
GGACATGTTGTGCCCTACAGGGGTGTCAGCTGACAGCAGGGGGAACATAG
TTCTGGGTAGCAGTGGGGATGGGAAGCTTCAGGTGTTCCGTCCAGACGGC
ACCTGGGTGGCCAACATCAGCAGTGATGGGGACAAACTGAAGGGGCCCCT
CGGGGTGGCTGTGACAGAGGATGGACATGTGTTTGTAGCTGATAGTGATG
ACAACTGTATCAGGAAGTACAGATATATGTAACAGATTGAAACGTCTAGG
ATACAGGAATGTGGTCAGTAAG Coding sequence (CDS) from alignment at xpSc0039671:217130..219151+ >transcript:BL79020_cuf0 ID=transcript:BL79020_cuf0|Name=transcript:BL79020_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3486bp|location=Sequence derived from alignment at xpSc0039671:217130..219151+ (Branchiostoma lanceolatum)
GAACAGGTGACGTCACAGCCGGCATCACTGGACACTTCCAGACAAGAATG
GGCAGAAAGCATTTGGTCCATTGCAAGCGTCCAGTCAGTGGCAAGCACCA
TGTCGTCAGGAAGCGTTCTGTCATCAGATTCAGGCTACGCATCAGCTGGG
AGCCACATGACCTTGTCTGAAGGAAGAAAACGAGCACCACGATACAAAGC
AGAAGCAGAAGCAGCCATCTCCAGGATTACCCAAGGAATGGAGAACCTTG
ACAGGGAAATCGCAGCTACAAAGGAGAACTGTAAGGAAGTAGAGAAGGAA
ATCCAGCAACACTACAAGAAGTTGAGGTCAAAACTAAAGCAAGAAGAGCA
GGAAATGATCACTAAGGTGCAAAAATGCAATGGAGACAGGAAAGGGGAAC
TGAGTCAGGAAAAAAAGAGATTGCAAACAGAGCTTGGAAAGACCAAGGAA
GATGTTACATTCTGTGAAAAGATTTTAGACTGTAAAGATGACAAAGAATT
TTTCACCTTAAAGCAACAAATTGAAGAAAGGTTTCAGAAACTATCCTTGC
AGCAAACAGGCAACAGGAGTTTGGAGAGTCATACAAGAGTGACCTTCAGA
CCCTGTAGCTTATCCCAGGTTTCTGGAGGTTCCTTGTCTGTGCTTGATAT
AGAAGGTCCAGTAGTGGAGAGTCTGTACTGCTCTGTTACAGTCACACCTG
ATACTGTGGGTCTAACAAGTGGGAATGTTGCACCACAGGTAGAGGTGACC
TCCCCTCAGGGCAAAACCACCCTGATACAGACTACAGCACACACTAGTCC
CCCACTAGCTGCAGGGAAGGGCCAAACCAGCAGAGTTAGGAGGGTCTGGG
GTGGAGAGTGGAGACCTCAGACTTCAGGGAAACACACACTGGGGGTCTGT
ATGGGGGGTAAGAAGGACCTGGGTTCTCTCACTGTAGATGTGGGCAGTAA
CAACCCTGTACTGAGGTTTGGGCAGTGGGGCCGCCAGCAGGGGCAGTTTC
ACAATCCTTTTGATGTAGCAGTCAGGGGGGACAGGCTGTATGTGGCTGAT
TATGCTAACCATCATGTTCAGGCGTTTGATCTGAGAGGGAACTTTTGTCA
TACCTTTTCTACTACTTTCCCTATAGGACTTACAGTTCAGACCGATGGCA
CCATAGTGGTGAACTCTGGGAATGAAGTGATGAAATTTTCCCCATCAGGA
GAATTGCTGCACAAATTTCCTCTGGGTGAATATTGCTCACGGCCCTGGGG
CCTGGCAGTACAGAGGGGTGGGAGGGTTGTTGTAGCTGATTGGGGCAAAC
ACAGCATCTTCCTGTTTGAGGCAGATGGGACACTGGTGAAACAGGTGGGA
GGGCAGGGACAGGGGGAGGGGAAGTTTGACATGCCATGTTTTGTCTGTGT
GGATAAAGAAGACAACATCATTGTGGCAGATACAGGCAACCACAGTGTTC
AGGTGTTTGACAAGAATCTGAACTTCAAACAAAAGTTTGGTCAGGAGGGC
AGACAGCCACAGGACATGTTGTGCCCTACAGGGGTGTCAGCTGACAGCAG
GGGGAACATAGTTCTGGGTAGCAGTGGGGATGGGAAGCTTCAGGTGTTCC
GTCCAGACGGCACCTGGGTGGCCAACATCAGCAGTGATGGGGACAAACTG
AAGGGGCCCCTCGGGGTGGCTGTGACAGAGGATGGACATGTGTTTGTAGC
TGATAGTGATGACAACTGTATCAGGAAGTACAGATATATGTAAGAACAGG
TGACGTCACAGCCGGCATCACTGGACACTTCCAGACAAGAATGGGCAGAA
AGCATTTGGTCCATTGCAAGCGTCCAGTCAGTGGCAAGCACCATGTCGTC
AGGAAGCGTTCTGTCATCAGATTCAGGCTACGCATCAGCTGGGAGCCACA
TGACCTTGTCTGAAGGAAGAAAACGAGCACCACGATACAAAGCAGAAGCA
GAAGCAGCCATCTCCAGGATTACCCAAGGAATGGAGAACCTTGACAGGGA
AATCGCAGCTACAAAGGAGAACTGTAAGGAAGTAGAGAAGGAAATCCAGC
AACACTACAAGAAGTTGAGGTCAAAACTAAAGCAAGAAGAGCAGGAAATG
ATCACTAAGGTGCAAAAATGCAATGGAGACAGGAAAGGGGAACTGAGTCA
GGAAAAAAAGAGATTGCAAACAGAGCTTGGAAAGACCAAGGAAGATGTTA
CATTCTGTGAAAAGATTTTAGACTGTAAAGATGACAAAGAATTTTTCACC
TTAAAGCAACAAATTGAAGAAAGGTTTCAGAAACTATCCTTGCAGCAAAC
AGGCAACAGGAGTTTGGAGAGTCATACAAGAGTGACCTTCAGACCCTGTA
GCTTATCCCAGGTTTCTGGAGGTTCCTTGTCTGTGCTTGATATAGAAGGT
CCAGTAGTGGAGAGTCTGTACTGCTCTGTTACAGTCACACCTGATACTGT
GGGTCTAACAAGTGGGAATGTTGCACCACAGGTAGAGGTGACCTCCCCTC
AGGGCAAAACCACCCTGATACAGACTACAGCACACACTAGTCCCCCACTA
GCTGCAGGGAAGGGCCAAACCAGCAGAGTTAGGAGGGTCTGGGGTGGAGA
GTGGAGACCTCAGACTTCAGGGAAACACACACTGGGGGTCTGTATGGGGG
GTAAGAAGGACCTGGGTTCTCTCACTGTAGATGTGGGCAGTAACAACCCT
GTACTGAGGTTTGGGCAGTGGGGCCGCCAGCAGGGGCAGTTTCACAATCC
TTTTGATGTAGCAGTCAGGGGGGACAGGCTGTATGTGGCTGATTATGCTA
ACCATCATGTTCAGGCGTTTGATCTGAGAGGGAACTTTTGTCATACCTTT
TCTACTACTTTCCCTATAGGACTTACAGTTCAGACCGATGGCACCATAGT
GGTGAACTCTGGGAATGAAGTGATGAAATTTTCCCCATCAGGAGAATTGC
TGCACAAATTTCCTCTGGGTGAATATTGCTCACGGCCCTGGGGCCTGGCA
GTACAGAGGGGTGGGAGGGTTGTTGTAGCTGATTGGGGCAAACACAGCAT
CTTCCTGTTTGAGGCAGATGGGACACTGGTGAAACAGGTGGGAGGGCAGG
GACAGGGGGAGGGGAAGTTTGACATGCCATGTTTTGTCTGTGTGGATAAA
GAAGACAACATCATTGTGGCAGATACAGGCAACCACAGTGTTCAGGTGTT
TGACAAGAATCTGAACTTCAAACAAAAGTTTGGTCAGGAGGGCAGACAGC
CACAGGACATGTTGTGCCCTACAGGGGTGTCAGCTGACAGCAGGGGGAAC
ATAGTTCTGGGTAGCAGTGGGGATGGGAAGCTTCAGGTGTTCCGTCCAGA
CGGCACCTGGGTGGCCAACATCAGCAGTGATGGGGACAAACTGAAGGGGC
CCCTCGGGGTGGCTGTGACAGAGGATGGACATGTGTTTGTAGCTGATAGT
GATGACAACTGTATCAGGAAGTACAGATATATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039671 | genome | xpSc0039671:217130..219151 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79020_cuf0 |
| Biotype | protein_coding |
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