transcript:BL79181_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL79181_cuf1
Unique Nametranscript:BL79181_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL79181_cuf1

>transcript:BL79181_cuf1-protein ID=transcript:BL79181_cuf1-protein|Name=transcript:BL79181_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=513bp
RGCGSGGTLRGSIHFEHFSSSKVIRGDEACNKFKAVEHVCAKGTLQIRES
RARKGALEARGLHGNFRSEGCLLHNSYLATRPQISSLLLEEPTLGVPMSP
VRVDHGAQGFHEGLAPGRCDSEKAGPSNSDLLRRSNNSSEVTRAMSGTYR
SSQGPFGDSGLRAELRKIPASAITSGNFSRFHSGLTINDTFTPRSESGQG
RGRMSALSFSSNYVSQTPGKCYRPARIYKTGYHASSPALQGTANSTKSGI
RTGRFFRLNNQPIPSGERRPPVVGQPRSRGQRTKGLRSHRFDYLFRCVPS
RVGGMLQWPENRGSLVPARGREPHKLARTPGSLPCTEILCIKAGSSRSPE
AGQYNSSCLPVVPTSEASRVACIRRQLQGRGLSSGASELILSAWRESTSR
QYQSSWGRWCSWCDRRGVDPVSGPVESVIEYLADLFSKGYEYMSIGVARS
AISSVHLPIDRCNIGSHPLVTKLLKGVFHRRPPCPRYIETWDVSQVLTYL
QHCCPANSLSLKQ
Run BLAST on NCBI

mRNA from alignment at Sc0000101:76473..78557+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL79181_cuf1 ID=transcript:BL79181_cuf1|Name=transcript:BL79181_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2085bp|location=Sequence derived from alignment at Sc0000101:76473..78557+ (Branchiostoma lanceolatum)
AAGGGGCTGTGGTTCCGGTGGAACCTTGCGAGGGTCAATTCATTTCGAGC
ATTTTTCTAGTTCCAAAGTCATCAGGGGGGATGAGGCCTGTAATAAATTT
AAAGCGGTTGAACACGTTTGTGCAAAAGGAACATTGCAAATTCGAGAGTC
TAGAGCTCGTAAAGGAGCTCTGGAGGCAAGGGGATTACATGGTAACTTTA
GATCTGAAGGATGCTTACTTCACAATTCCTATTTGGCTACAAGACCGCAA
ATTTCTTCGCTTCTCTTGGAGGAACCAACTCTGGGAGTTCCAATGTCTCC
CGTTCGGGTTGACCACGGCGCCCAGGGTTTTCACGAAGGTCTTGCGCCCG
GTCGTTGCGATTCTGAGAAAGCAGGGCCTTCTAATAGTGATCTACTTAGA
CGATCTAATAATTCTAGCGAGGTCACCAGAGCAATGTCTGGCACATATCG
CAGTAGCCAGGGACCTTTTGGAGACTCTGGGCTTCGTGCTGAACTTAGAA
AAATCCCGGCTAGTGCCATCACAAGTGGTAACTTTTCTAGGTTTCATTCT
GGACTCACAATCAACGACACTTTCACTCCCAGAAGCGAAAGTGGTCAAGG
TCGAGGAAGAATGTCAGCATTGTCTTTCTCTTCGAACTATGTCAGCCAGA
CACCTGGCAAGTGTTATAGGCCTGCTAGAATCTACAAGACAGGCTATCAT
GCAAGCTCCCCTGCATTACAGGGCACTGCAAACTCTACTAAATCAGGCAT
TAGAACGGGAAGGTTCTTTCGACTCAATAACCAGCCTATCCCCTCCGGCG
AAAGACGACCTCCAGTGGTGGGTCAACCACGTTCGCGGGGTCAACGGACG
AAGGGTCTTCGTTCCCACAGATTTGACTATCTTTTCCGATGCGTCCCTTC
AAGGGTGGGGGGCATGTTGCAATGGCCAGAGAACCGGGGGTCGTTGGTCC
CAGCTAGAGGCAGGGAACCACATAAACTGGCTAGAACTCCAGGCAGCCTT
CCTTGCACTGAAATCCTTTGCATCAAAGCAGGATCATCACGTTCTCCTGA
AGCTGGACAATACAACAGCAGTTGCCTACATAAACCGTATGGGGGGGACG
AAGTCCCCAACACTAGCAGCCCTAGCACTAGAAATATGGCATTGGGCACT
ACAGAAGGGTTTAATGCTTTCTGCCAGTCACCTCCCAGGTCTGGACAATA
CGGAAGCAGATTCCTGCTCCCGAGTATTTCAGGACAAGACAGAATGGCAG
CTAGACAGGTCAGTGTTTCTGCAGATCAATGCTCAGACAGATTTTGCTCT
CACCATAGACCTCTTTGCGTCGCGCCTGAATGCTCAACTGCCGAGGTTCG
TAGCATGGCGTCCCGACCCCATGGCAGTAGCAGTGAATGCCCTAGACATG
GATTGGTATCAGCTAGGTCTGGCCTATGCCTTCCCTCCATTCAGTCTAGT
GTTCAGAGTCCTCAGGAAAGTTCAGACGGATCATGCGACAGTGATGCTAG
TAGCACCAGTTTGGAGAGCACAAGCATGGTACCCCAAGCTCCTTCACATG
CTGTACGACAGGCCAACCCTCCTCCCCCACAGGCGGGATCTGTTGTTTCT
GCCACACAACAAGGAGCATCACCCGTTGTTCCCACGTCTGAAGCTAGCCG
TGTGGCCTGTATCAGGCGACAGTTGCAAGGTCGAGGCCTTTCTTCAGGAG
CTTCAGAGCTCATCTTGTCAGCCTGGAGAGAGAGTACCTCTCGACAGTAT
CAATCATCTTGGGGACGATGGTGTAGCTGGTGTGATCGCAGGGGTGTCGA
TCCCGTTTCAGGGCCTGTAGAGAGTGTCATAGAATACTTAGCAGATCTAT
TCAGCAAGGGATATGAGTATATGTCTATTGGTGTAGCACGTTCTGCCATA
TCGTCAGTTCACCTCCCAATTGATAGGTGCAACATAGGCAGTCACCCTCT
AGTAACCAAGCTCCTAAAAGGTGTTTTTCATCGTAGGCCCCCATGCCCGA
GGTATATTGAAACCTGGGACGTTAGTCAGGTGCTGACGTATTTGCAGCAC
TGTTGCCCAGCTAATAGCCTCAGTCTGAAGCAGCT

Coding sequence (CDS) from alignment at Sc0000101:76473..78557+

>transcript:BL79181_cuf1 ID=transcript:BL79181_cuf1|Name=transcript:BL79181_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3078bp|location=Sequence derived from alignment at Sc0000101:76473..78557+ (Branchiostoma lanceolatum)
AGGGGCTGTGGTTCCGGTGGAACCTTGCGAGGGTCAATTCATTTCGAGCA
TTTTTCTAGTTCCAAAGTCATCAGGGGGGATGAGGCCTGTAATAAATTTA
AAGCGGTTGAACACGTTTGTGCAAAAGGAACATTGCAAATTCGAGAGTCT
AGAGCTCGTAAAGGAGCTCTGGAGGCAAGGGGATTACATGGTAACTTTAG
ATCTGAAGGATGCTTACTTCACAATTCCTATTTGGCTACAAGACCGCAAA
TTTCTTCGCTTCTCTTGGAGGAACCAACTCTGGGAGTTCCAATGTCTCCC
GTTCGGGTTGACCACGGCGCCCAGGGTTTTCACGAAGGTCTTGCGCCCGG
TCGTTGCGATTCTGAGAAAGCAGGGCCTTCTAATAGTGATCTACTTAGAC
GATCTAATAATTCTAGCGAGGTCACCAGAGCAATGTCTGGCACATATCGC
AGTAGCCAGGGACCTTTTGGAGACTCTGGGCTTCGTGCTGAACTTAGAAA
AATCCCGGCTAGTGCCATCACAAGTGGTAACTTTTCTAGGTTTCATTCTG
GACTCACAATCAACGACACTTTCACTCCCAGAAGCGAAAGTGGTCAAGGT
CGAGGAAGAATGTCAGCATTGTCTTTCTCTTCGAACTATGTCAGCCAGAC
ACCTGGCAAGTGTTATAGGCCTGCTAGAATCTACAAGACAGGCTATCATG
CAAGCTCCCCTGCATTACAGGGCACTGCAAACTCTACTAAATCAGGCATT
AGAACGGGAAGGTTCTTTCGACTCAATAACCAGCCTATCCCCTCCGGCGA
AAGACGACCTCCAGTGGTGGGTCAACCACGTTCGCGGGGTCAACGGACGA
AGGGTCTTCGTTCCCACAGATTTGACTATCTTTTCCGATGCGTCCCTTCA
AGGGTGGGGGGCATGTTGCAATGGCCAGAGAACCGGGGGTCGTTGGTCCC
AGCTAGAGGCAGGGAACCACATAAACTGGCTAGAACTCCAGGCAGCCTTC
CTTGCACTGAAATCCTTTGCATCAAAGCAGGATCATCACGTTCTCCTGAA
GCTGGACAATACAACAGCAGTTGCCTACCCGTTGTTCCCACGTCTGAAGC
TAGCCGTGTGGCCTGTATCAGGCGACAGTTGCAAGGTCGAGGCCTTTCTT
CAGGAGCTTCAGAGCTCATCTTGTCAGCCTGGAGAGAGAGTACCTCTCGA
CAGTATCAATCATCTTGGGGACGATGGTGTAGCTGGTGTGATCGCAGGGG
TGTCGATCCCGTTTCAGGGCCTGTAGAGAGTGTCATAGAATACTTAGCAG
ATCTATTCAGCAAGGGATATGAGTATATGTCTATTGGTGTAGCACGTTCT
GCCATATCGTCAGTTCACCTCCCAATTGATAGGTGCAACATAGGCAGTCA
CCCTCTAGTAACCAAGCTCCTAAAAGGTGTTTTTCATCGTAGGCCCCCAT
GCCCGAGGTATATTGAAACCTGGGACGTTAGTCAGGTGCTGACGTATTTG
CAGCACTGTTGCCCAGCTAATAGCCTCAGTCTGAAGCAGAGGGGCTGTGG
TTCCGGTGGAACCTTGCGAGGGTCAATTCATTTCGAGCATTTTTCTAGTT
CCAAAGTCATCAGGGGGGATGAGGCCTGTAATAAATTTAAAGCGGTTGAA
CACGTTTGTGCAAAAGGAACATTGCAAATTCGAGAGTCTAGAGCTCGTAA
AGGAGCTCTGGAGGCAAGGGGATTACATGGTAACTTTAGATCTGAAGGAT
GCTTACTTCACAATTCCTATTTGGCTACAAGACCGCAAATTTCTTCGCTT
CTCTTGGAGGAACCAACTCTGGGAGTTCCAATGTCTCCCGTTCGGGTTGA
CCACGGCGCCCAGGGTTTTCACGAAGGTCTTGCGCCCGGTCGTTGCGATT
CTGAGAAAGCAGGGCCTTCTAATAGTGATCTACTTAGACGATCTAATAAT
TCTAGCGAGGTCACCAGAGCAATGTCTGGCACATATCGCAGTAGCCAGGG
ACCTTTTGGAGACTCTGGGCTTCGTGCTGAACTTAGAAAAATCCCGGCTA
GTGCCATCACAAGTGGTAACTTTTCTAGGTTTCATTCTGGACTCACAATC
AACGACACTTTCACTCCCAGAAGCGAAAGTGGTCAAGGTCGAGGAAGAAT
GTCAGCATTGTCTTTCTCTTCGAACTATGTCAGCCAGACACCTGGCAAGT
GTTATAGGCCTGCTAGAATCTACAAGACAGGCTATCATGCAAGCTCCCCT
GCATTACAGGGCACTGCAAACTCTACTAAATCAGGCATTAGAACGGGAAG
GTTCTTTCGACTCAATAACCAGCCTATCCCCTCCGGCGAAAGACGACCTC
CAGTGGTGGGTCAACCACGTTCGCGGGGTCAACGGACGAAGGGTCTTCGT
TCCCACAGATTTGACTATCTTTTCCGATGCGTCCCTTCAAGGGTGGGGGG
CATGTTGCAATGGCCAGAGAACCGGGGGTCGTTGGTCCCAGCTAGAGGCA
GGGAACCACATAAACTGGCTAGAACTCCAGGCAGCCTTCCTTGCACTGAA
ATCCTTTGCATCAAAGCAGGATCATCACGTTCTCCTGAAGCTGGACAATA
CAACAGCAGTTGCCTACCCGTTGTTCCCACGTCTGAAGCTAGCCGTGTGG
CCTGTATCAGGCGACAGTTGCAAGGTCGAGGCCTTTCTTCAGGAGCTTCA
GAGCTCATCTTGTCAGCCTGGAGAGAGAGTACCTCTCGACAGTATCAATC
ATCTTGGGGACGATGGTGTAGCTGGTGTGATCGCAGGGGTGTCGATCCCG
TTTCAGGGCCTGTAGAGAGTGTCATAGAATACTTAGCAGATCTATTCAGC
AAGGGATATGAGTATATGTCTATTGGTGTAGCACGTTCTGCCATATCGTC
AGTTCACCTCCCAATTGATAGGTGCAACATAGGCAGTCACCCTCTAGTAA
CCAAGCTCCTAAAAGGTGTTTTTCATCGTAGGCCCCCATGCCCGAGGTAT
ATTGAAACCTGGGACGTTAGTCAGGTGCTGACGTATTTGCAGCACTGTTG
CCCAGCTAATAGCCTCAGTCTGAAGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL79181gene:BL79181Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL79181_cuf1-E1BL79181_cuf1-E1-1564476830-302033Branchiostoma lanceolatumexon
BL79181_cuf1-E2BL79181_cuf1-E2-1564476830-302036Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL79181_cuf1transcript:BL79181_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000101genomeSc0000101:76473..78557 +
Properties
Property NameValue
Transcript idBL79181_cuf1
Biotypeprotein_coding