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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79223_cuf0 >transcript:BL79223_cuf0-protein ID=transcript:BL79223_cuf0-protein|Name=transcript:BL79223_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
MMIYERRQSGITDRCIANFVFNVYQQECTRVLTHNGNLGTCNQYFTKCTH
NHQVVCNIKPVVPIKVILIKMHVHISNLDVPKSIPPHTPSVSLGYHTKL Run BLAST on NCBI mRNA from alignment at Sc0000615:38864..42065- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79223_cuf0 ID=transcript:BL79223_cuf0|Name=transcript:BL79223_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3202bp|location=Sequence derived from alignment at Sc0000615:38864..42065- (Branchiostoma lanceolatum)
ACCAGGCCCTGGTAACGCCGGCATCTACGAAATCGAGGCTCGTTACAAGC
GCAAGGGATGATGGGAACAATTTGTGGCGGCAAATTTAAAATTTCTCCGG
ATCCTTTCTGTTGTATTATTCTCTACATTGTCTCTCTGCAATGTAACAGT
GTTGTGTTGGGTAATTTCATAAGCAAGAAGTCTTGAGCTAACCAATGAAA
GATATGAACGCACTTATGTTTCACTGAAACTTTAGGCCACTCTGAATGCC
TAGGTACTCTTTAGGAGGTATTCTCTAATAGACCCCCTTACTTGCACTGT
GCAGAATAATCTAATGCATAGTGGCACATGTCATTAAGAAAACAGAGGGA
AATAAAAAGAAAGTATGATAGTGTAAAATGAAATGACGGAGAGCATGTTC
TCATTTCAAGTATAAATCTTTTTTTATTCCCATCACTTTCCCAATTTTTT
TCTTGGTAGATATCTCATTTGAAGTTAATGCTATGACTTCATCAACTTGC
ATTAGTACGTTAGAATTTGTTTTAGCTAATAACAGACTTGTGAGGTGTAT
CTTACTATACTATGATGATTTATGAAAGAAGGCAGTCTGGCATCACAGAC
AGGTGCATTGCAAACTTTGTCTTTAATGTGTATCAACAGGAATGTACAAG
AGTGCTAACACACAATGGAAACTTGGGTACCTGCAATCAATATTTCACAA
AATGTACACATAATCATCAGGTGGTATGTAATATTAAACCAGTAGTTCCT
ATCAAAGTGATACTGATCAAAATGCATGTACATATCTCCAACCTGGATGT
ACCAAAATCAATCCCACCACATACACCTTCAGTTTCCTTAGGATATCATA
CAAAATTGTGAAGGAGAGGGAATACAGGAGCCCTGGTAATCTAACCAGGT
TATTAGTATGACAACAACACAATGCCTTTATCTAGCCTGATTTCAAAGAG
GTTAAGTTAAAATTTGGGATAGGGACGATGAATCACTCATAATAGTAATA
AAGATAGATAACAGACTACCAGACATATATTAGTTAGTGAACAAATAAAT
AATACACAAAATTGCTGTAAAGTGTACAGCCATATTTTCATTCCATGGGT
ATTCCAGGTCAGCTTTTCTAAGATAAGGGTGTATTGAAGTTGGTGAGAAA
AGAGATTCCGATTGTAAGGCAGGGTTGAACTCCACAATCCTGGTTCAGAA
CCAACCAGCAACTTTCTAGATCTGTACTTGAACTGGAAGATAAAGAGAGA
AATCATGAATTGATGAATGTAACATTTGCTTTTCTATCTAACTTCTGCTG
TGAATGATGTCTGTTATTGACTTTCCAAAAGGAATTATAATTTACTCAAA
TACTCTACAAAATGTACAAAGGCCGATTGGATCACACATAGAGTTGATAA
TACTTACATTTCTATTCATAGTTGGTATAGCTTTTGATATGTTCATATTC
CACAATGTGCATCTTGGCTTCATGTGTCATGGTATTAGCAGCAATGAAGC
TCTACAGTGGCAAAACTTGTTTTATTAGATCCAAACTGAGCATGATTTCT
GTACTGTTTCTTGGGGGGGAGGGTGGCTAAAGCATTACAATACAAGGTGT
ACAAAATACTAATCATAGCCTAATGTAAGAACAGTAATCTCAGCAGTCAG
TACCATAATAAAGTTGAAAACTGATAAAGGTATCCCTTATTATTCTAAGG
TTACACATCAAAACAGATTATTTGTATTTCTTTGATTACTTAGGAGGTTT
GAACTTTAGTCCAATATGACAGATTAGATTACTCTGTTCAGCCTATTTTT
CTAAATTTGCAGTTTTGTTTCTTAATTAAAAAAATACATTTCTCAAATAT
GTTGGAAACATATATGTAACGTTACTATAGAATCTGAGATTGTACCTGGG
AAAAGATAGTTTGTTTCAGAGTTTCCCCCCAGTAAGGCTAATAGTTGGCA
CACTCTAGACAATATGGCCTCATGCTGACCAAATATTGAACATCTTTGAA
ATTGTGTATATCTGGATGAAACAAATGGATCACTCCAAGATTCAGAAATC
TATCAGAGAAATATATGTAGTCATGTTTTAGATTACTTTCATAAAAATCA
ACTGATGTTTTTAAACTTATGCCAGTCATTTAAGNTTTAAAAAAAAACAA
TTGATGTTTTTGAATTCGTGCCAGTTGTTAAACCTAATGCACTTTACAAA
ATATGATTGAGTAAATTTCAAGCAATTTCAACACCCTGTATTTTTGTCCA
AAATAAGTGGATCTCTCCAATATCCTGGAATATCTTAGAGTGATATATCT
AGTCATGTTTCAGATGACTTTCAACAAAATCAATTGATGTTTTTGAATTT
GTGCCAGAACTTCAAGTAACCACACTCAGCACAATATGAATGACAGAATT
TCAGTGAAGTTTGACTGCCTATATTTTCATATCAAATAAGTGGATCTTTT
CAATATCCTAAAATATGTTCGAGTGATATATCTAGTCATGTTTAAGATTA
CTTTCTAAAAAATCAAGTGATGTTTTTGAATTTGTGCCAGGCCTCAAAGT
GAGAGCACTTCGGACAATATGGATGACAGAATTTCTATGAAGTTTGGCTG
CCTATATTTTCATATCAAATAGGTGGATCTCTTCAATATCCTGGAATATG
TTAGAGTGATATATCTAGTCATGTTTAAGATTACTTTTTTAAAAATCAAC
TCATGTTTTTGAATTTGTGCCAGGCCTCAAAGTGAAAGCACTTTGTTTCT
TTGAATTCAGTGGGTGGGAGGGGGGCATATGTATTCTGGATTGAATTTTT
CGAGATCGGTTGAATCGATTTCAGTGATAAAGGGATCCGCGTAGCACTCA
TTAGAAAATAAGTTCAAATAAAATTTGGGACTACCGTACTCTCTCAAGTC
AAAGTTTAATGTCGCCAAAGGCCCCAGACTACTGTCTCCAAGGACAAAGG
GGGAGAAACAGGACAATCGGCAAGTCATAGAAGTATAAATGACATGAAAG
ATGATGAACACGTATATCCCCTGTCTATACGTACCTTGTATGTAGTCATC
GATGGTCATCCCGGTGAATAGCGATCTGTTTTCTTGCTCCCACTTCGGGT
TTCCGGCATGAGCCGCCATCTTGAATGGCGGCCATCTTGTAACACGCCTA
ATTACCCATTCGCAATGCGCGCTTCCTCACCATTGTACTTTCCACCATGC
TA Coding sequence (CDS) from alignment at Sc0000615:38864..42065- >transcript:BL79223_cuf0 ID=transcript:BL79223_cuf0|Name=transcript:BL79223_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=300bp|location=Sequence derived from alignment at Sc0000615:38864..42065- (Branchiostoma lanceolatum)
ATGATGATTTATGAAAGAAGGCAGTCTGGCATCACAGACAGGTGCATTGC
AAACTTTGTCTTTAATGTGTATCAACAGGAATGTACAAGAGTGCTAACAC
ACAATGGAAACTTGGGTACCTGCAATCAATATTTCACAAAATGTACACAT
AATCATCAGGTGGTATGTAATATTAAACCAGTAGTTCCTATCAAAGTGAT
ACTGATCAAAATGCATGTACATATCTCCAACCTGGATGTACCAAAATCAA
TCCCACCACATACACCTTCAGTTTCCTTAGGATATCATACAAAATTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000615 | genome | Sc0000615:38864..42065 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79223_cuf0 |
| Biotype | protein_coding |
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