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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79336_cuf1 >transcript:BL79336_cuf1-protein ID=transcript:BL79336_cuf1-protein|Name=transcript:BL79336_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=207bp
MTLACMAGLVLLFLSGFPVKGKGTFADQFPQIKAVRSNLNTTVGETVEME
YMYGIPVNSTDSTVLKTIYILKQGRLRESVCEVVPNGTRCDGQYQARARL
EDKPWDYDDGTSYKRGLLVLTLKNVMLSDTAVYEGEVRVFLGGYNQSKVS
VTVEDVPWCPYLPCPGGEWLECRTDTNMTCSCTCRPECTTRFDVGSYIGG
VATVVVA Run BLAST on NCBI mRNA from alignment at Sc0000086:533606..535719- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79336_cuf1 ID=transcript:BL79336_cuf1|Name=transcript:BL79336_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2114bp|location=Sequence derived from alignment at Sc0000086:533606..535719- (Branchiostoma lanceolatum)
CGTCACCGAACCGTGTGGTTCAAACCGGGAAGTTCCGCTGTCTGGCTGTG
AGCCTCCGGGGATAGTAAGGCCCAGAGCACCTGTCTATAAACCACTCATC
TGTACAAGTCCACATAGTCAGCCTCTTGTTGAGGGAAAACATTTGTGTGG
TTACCAACATGACTCTGGCGTGTATGGCAGGCCTGGTGCTGCTCTTTTTG
TCAGGTAGGTACCACACCGCATGCACACCTGTAATCACATGTAGGCGCCG
AGAATGTGGGGTCACATTTTGCACGCATCGCGCCCCCGCGTCGCCTGGCG
TGAATAATTCAAATTGTCATATTCTAGCTTGGTGTACCTACGTTGGTGTT
TCTGTCCGATAATGAATTCGTATGTTGATGCACGTGAAACGATAGTCGGT
GTATAGTTCGTTACAAACGAGCAAATGATGGCTTAAGAAGTCCCATGACG
TATGGCGGGGAAGCCCAGACGAAAACAAAAATCCCCGTGTTTGCGTTACT
GACGGCTGAACACGAAGTCTGTATCAATTCAGAATCGGAGTTTTAAATGA
ATACATCCATTACTATCTGCAACCAAGTATAATTCGTGGGTCTAAACACC
ATGACGGTAGCTTTCAATTGTATCGTCTAGGTTCTAGTGTCCATGAAGCC
GGCAATACATTGCTAAATATAGTACATACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCACCCGTACTCTCAAG
ATTTTAGTACAGATATGCTTTGTTATGTTTAAACTCTAAAGAAATATGGC
AAAAATGACCGACAAAATGTACAACACTACAGACACCATCAATTGTTGCA
ATCTGTGTTTTTTTCTATGTGTTTGATTCGTTAACCGTGCGGTTTACTTT
AAATGCAGGTTTTCCGGTAAAGGGAAAAGGCACGTTTGCAGACCAGTTTC
CACAGATAAAGGCGGTTCGTTCCAACCTGAATACAACGGTTGGGGAAACA
GTTGAAATGGAATACATGTATGGAATACCGGTCAACTCAACTGACAGTAC
TGTGCTCAAAACTATATACATCTTAAAACAAGGGCGACTTCGTGAGTCGG
TGTGTGAGGTGGTGCCGAACGGAACGCGCTGTGACGGTCAGTACCAGGCC
CGTGCCCGTCTGGAGGACAAACCCTGGGACTACGATGACGGGACGTCCTA
CAAGAGAGGCTTGCTGGTCCTAACGTTGAAGAACGTGATGCTGTCTGACA
CGGCGGTGTACGAGGGGGAGGTGAGAGTGTTTCTGGGGGGTTACAACCAG
TCCAAAGTGTCCGTAACAGTGGAAGGTAAGTGTATTTTAAAATCATTATA
AGACCATTTTAAGCATTATTGAATGTACGTGTGCGTGGGCGGAGGTAGTT
AGCTGTTATTCTTAGTAAACATTCAAAACATTTCTCTGAAACAGACTCGT
ATTTCTATCACAATTCATGCATGGTTCAGAAATCAAGAAACTGTTGACAA
AAATCATAACGATAATTTGAAGTTAATTGGCACGTTACCATTACAGACGT
CCCCTGGTGCCCTTACCTGCCGTGTCCAGGCGGAGAGTGGTTAGAGTGCC
GAACAGACACAAACATGACCTGCTCCTGCACCTGCCGCCCCGAATGTACC
ACACGATTTGACGGTAAGGGAGTTTACACAACCGAACTGAGCGATACATT
AGCAGCAATCAATCTCCATTAACGTGCAATATTTCCGTCTTTGAAAGACA
ATAACATAACATATTGAGTTATTGATTTACCTTACGTTATGGCTTATGCT
TGACCTGTTGTGTAGTCGAAATGAATGACAGGATGTCTTCGACTTGTTGC
ATGACTTTCCATCCATTCTAGTTGGTTCATACATCGGAGGGGTTGCCACC
GTTGTCGTCGCCTG Coding sequence (CDS) from alignment at Sc0000086:533606..535719- >transcript:BL79336_cuf1 ID=transcript:BL79336_cuf1|Name=transcript:BL79336_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2484bp|location=Sequence derived from alignment at Sc0000086:533606..535719- (Branchiostoma lanceolatum)
ATGACTCTGGCGTGTATGGCAGGCCTGGTGCTGCTCTTTTTGTCAGGTTT
TCCGGTAAAGGGAAAAGGCACGTTTGCAGACCAGTTTCCACAGATAAAGG
CGGTTCGTTCCAACCTGAATACAACGGTTGGGGAAACAGTTGAAATGGAA
TACATGTATGGAATACCGGTCAACTCAACTGACAGTACTGTGCTCAAAAC
TATATACATCTTAAAACAAGGGCGACTTCGTGAGTCGGTGTGTGAGGTGG
TGCCGAACGGAACGCGCTGTGACGGTCAGTACCAGGCCCGTGCCCGTCTG
GAGGACAAACCCTGGGACTACGATGACGGGACGTCCTACAAGAGAGGCTT
GCTGGTCCTAACGTTGAAGAACGTGATGCTGTCTGACACGGCGGTGTACG
AGGGGGAGGTGAGAGTGTTTCTGGGGGGTTACAACCAGTCCAAAGTGTCC
GTAACAGTGGAAGACGTCCCCTGGTGCCCTTACCTGCCGTGTCCAGGCGG
AGAGTGGTTAGAGTGCCGAACAGACACAAACATGACCTGCTCCTGCACCT
GCCGCCCCGAATGTACCACACGATTTGACGTTGGTTCATACATCGGAGGG
GTTGCCACCGTTGTCGTCGCCATGACTCTGGCGTGTATGGCAGGCCTGGT
GCTGCTCTTTTTGTCAGGTTTTCCGGTAAAGGGAAAAGGCACGTTTGCAG
ACCAGTTTCCACAGATAAAGGCGGTTCGTTCCAACCTGAATACAACGGTT
GGGGAAACAGTTGAAATGGAATACATGTATGGAATACCGGTCAACTCAAC
TGACAGTACTGTGCTCAAAACTATATACATCTTAAAACAAGGGCGACTTC
GTGAGTCGGTGTGTGAGGTGGTGCCGAACGGAACGCGCTGTGACGGTCAG
TACCAGGCCCGTGCCCGTCTGGAGGACAAACCCTGGGACTACGATGACGG
GACGTCCTACAAGAGAGGCTTGCTGGTCCTAACGTTGAAGAACGTGATGC
TGTCTGACACGGCGGTGTACGAGGGGGAGGTGAGAGTGTTTCTGGGGGGT
TACAACCAGTCCAAAGTGTCCGTAACAGTGGAAGACGTCCCCTGGTGCCC
TTACCTGCCGTGTCCAGGCGGAGAGTGGTTAGAGTGCCGAACAGACACAA
ACATGACCTGCTCCTGCACCTGCCGCCCCGAATGTACCACACGATTTGAC
GTTGGTTCATACATCGGAGGGGTTGCCACCGTTGTCGTCGCCATGACTCT
GGCGTGTATGGCAGGCCTGGTGCTGCTCTTTTTGTCAGGTTTTCCGGTAA
AGGGAAAAGGCACGTTTGCAGACCAGTTTCCACAGATAAAGGCGGTTCGT
TCCAACCTGAATACAACGGTTGGGGAAACAGTTGAAATGGAATACATGTA
TGGAATACCGGTCAACTCAACTGACAGTACTGTGCTCAAAACTATATACA
TCTTAAAACAAGGGCGACTTCGTGAGTCGGTGTGTGAGGTGGTGCCGAAC
GGAACGCGCTGTGACGGTCAGTACCAGGCCCGTGCCCGTCTGGAGGACAA
ACCCTGGGACTACGATGACGGGACGTCCTACAAGAGAGGCTTGCTGGTCC
TAACGTTGAAGAACGTGATGCTGTCTGACACGGCGGTGTACGAGGGGGAG
GTGAGAGTGTTTCTGGGGGGTTACAACCAGTCCAAAGTGTCCGTAACAGT
GGAAGACGTCCCCTGGTGCCCTTACCTGCCGTGTCCAGGCGGAGAGTGGT
TAGAGTGCCGAACAGACACAAACATGACCTGCTCCTGCACCTGCCGCCCC
GAATGTACCACACGATTTGACGTTGGTTCATACATCGGAGGGGTTGCCAC
CGTTGTCGTCGCCATGACTCTGGCGTGTATGGCAGGCCTGGTGCTGCTCT
TTTTGTCAGGTTTTCCGGTAAAGGGAAAAGGCACGTTTGCAGACCAGTTT
CCACAGATAAAGGCGGTTCGTTCCAACCTGAATACAACGGTTGGGGAAAC
AGTTGAAATGGAATACATGTATGGAATACCGGTCAACTCAACTGACAGTA
CTGTGCTCAAAACTATATACATCTTAAAACAAGGGCGACTTCGTGAGTCG
GTGTGTGAGGTGGTGCCGAACGGAACGCGCTGTGACGGTCAGTACCAGGC
CCGTGCCCGTCTGGAGGACAAACCCTGGGACTACGATGACGGGACGTCCT
ACAAGAGAGGCTTGCTGGTCCTAACGTTGAAGAACGTGATGCTGTCTGAC
ACGGCGGTGTACGAGGGGGAGGTGAGAGTGTTTCTGGGGGGTTACAACCA
GTCCAAAGTGTCCGTAACAGTGGAAGACGTCCCCTGGTGCCCTTACCTGC
CGTGTCCAGGCGGAGAGTGGTTAGAGTGCCGAACAGACACAAACATGACC
TGCTCCTGCACCTGCCGCCCCGAATGTACCACACGATTTGACGTTGGTTC
ATACATCGGAGGGGTTGCCACCGTTGTCGTCGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000086 | genome | Sc0000086:533606..535719 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79336_cuf1 |
| Biotype | protein_coding |
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