|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79410_cuf0 >transcript:BL79410_cuf0-protein ID=transcript:BL79410_cuf0-protein|Name=transcript:BL79410_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=431bp
FRAVRIHRSRKQRNSRDLSNQSSVDREECPVPPPRRTSRHIGRPQVEDSP
RSKVLSKALPPTPREEGQDHPDGHEIPYDFLWPGTGRIDTSNRDSSGSTE
EQPQFVDRKELDNALHVTADEEPSDFEYLEDWEDWSEMDNRHRNGEGNNN
KAVANSRFSQASNRERNRNDKGVTESNTLNSLVSSDESQAYELLVDIGKS
KSLPWDTRTPLSPTNADLGDIPPRPPRNPTATPPPLPLSPRPSMTSLSDS
QKSGQTSPQQVRSGQRSPVEGPPILPRGIPPTHSSVSSLSDSDPPPLPPP
RLPPRPMTSRAKSENRSESPSDFEDMDSLSIDGSQESDSDKRSPRVNSSP
FVTDPDWIPPDNLSNLTVQEVSQCLRYIGTPDNVVQQFFRERIDGQMLIQ
LDKDILSQEFRLSGLQTKKISEFINGWRPRL Run BLAST on NCBI mRNA from alignment at xfSc0000178:1..7508+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79410_cuf0 ID=transcript:BL79410_cuf0|Name=transcript:BL79410_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7508bp|location=Sequence derived from alignment at xfSc0000178:1..7508+ (Branchiostoma lanceolatum)
ATTTCAGAGCAGTCAGAATCCACCGATCCAGAAAGCAGAGGAACTCAAGA
GACTTGAGCAACCAGAGTAGCGTAGATCGTGAGGAATGCCCCGTACCACC
TCCGCGTCGCACGAGTAGGCACATAGGAAGACCCCAGGTTGAAGACTCAC
CCAGATCCAAAGTTCTTAGCAAAGCCCTGCCTCCCACTCCGAGAGAGGAG
GGACAAGATCACCCTGATGGACATGAGATCCCTTATGACTTCCTGTGGCC
GGGGACGGGAAGGATAGACACTTCAAACAGGGACAGTAGTGGGAGCACAG
AGGAACAACCACAGTTCGTGGACCGTAAGGAGTTGGACAACGCTTTGCAC
GTGACGGCAGATGAAGAACCATCGGACTTTGAATATCTGGAGGATTGGGA
AGACTGGTCAGAGATGGATAACAGGCATCGCAATGGTGAAGGGAACAACA
ACAAGGCTGTGGCCAACTCACGGTTCTCCCAAGCATCTAACAGAGAAAGA
AATCGCAATGACAAAGGTGTGACAGAAAGTAACACTCTTAATTCACTTGT
CAGCAGTGACGAGAGTCAGGCGTATGAACTCCTTGTAGATATTGGAAAGA
GCAAGTCCCTTCCTTGGGACACTAGGACACCTTTATCTCCAACTAATGCT
GACTTGGGTGACATTCCACCTCGACCACCGAGGAACCCCACAGCAACCCC
ACCACCCCTCCCACTGAGTCCCCGCCCTTCCATGACTAGTCTGAGTGACA
GCCAAAAATCAGGCCAAACTTCACCTCAGCAGGTCAGGTCAGGTCAGAGG
TCGCCTGTTGAAGGACCACCGATCCTCCCGCGTGGAATACCACCTACCCA
CAGTTCTGTTTCCAGCTTGAGTGACAGCGACCCCCCTCCTCTCCCCCCAC
CACGGCTTCCTCCTCGTCCCATGACGAGCCGGGCAAAGTCCGAGAACAGG
TCGGAGAGTCCATCTGACTTTGAGGACATGGACAGTCTGAGCATAGATGG
ATCTCAAGAGAGTGACAGCGACAAAAGGTCGCCGAGGGTGAACAGCAGCC
CCTTCGTGACGGATCCTGACTGGATCCCGCCGGATAACTTGTCCAACCTG
ACAGTCCAGGAGGTGTCGCAGTGCCTTCGCTACATCGGGACGCCGGACAA
TGTAGTGCAGCAGTTCTTTCGGGAAAGGATAGATGGACAGATGCTAATAC
AGTTAGACAAAGACATTCTCAGCCAAGAATTCAGGCTCAGTGGCCTGCAG
ACTAAGAAAATCTCTGAGTTCATCAATGGCTGGAGACCCAGACTATAGGT
AGGACAATTGTAGATGGGAGGAGCTTAGTCTAGGTGAGTGACAGGCACAT
TGCACAGCATTTCCACACAAACCTTTGACCCAGGTGTATTTGAATTCCAC
CACACAGAAATATGGCAAAGTTTAGTCCATCAATTGTTTGGTCAGTTTTG
CCATATTTCCAAGAAACGGGCAAATTTTAGGAATGAATCTTCAGTAAGGC
CAAACAAATTTAACCTCTCAGTTTTAACAAATTGAAGACCCCACCAATTG
TAATTTCAAACGTTGAGGTTGAACCGTTGCATTTTTTACCATCCCTTGTT
GAACTAAAGTTAAAAGATTCAAAAGCCCTACATCACCCTCAGGGTGCATA
TGTGCCAAAGACACATGTCTGATCAGGGCTCGAAATTCATTTTTGGAAAT
AGGTGCACTGGTGCACCAAGCAAAAAATTGTTTCTGTGCACCACATAGAA
TAAAGCTGAAAGTCAGCAAAACACATTCAAGTCTAGAACTTCAATCTGTA
ATTTTATGCCTAACTTCAAAATTTCAAAGAAGTAATGCATCAAACAAAGT
TATATTACTTTTTGAGATACTGTACTCGAATTTCAAGAATGTTTTCTATA
CCAGTGTACAATACAATGTAGTACCTCTACCCTAAAGTCTGCCAAAATAT
CTACTAGTATAATATGTAGGTGCACTGGTGCACCCACAGTCAAAAATTAG
GTGTACAGCTTCAATTTTGGGTGCACACACCTGTACAGGTGCACATGCAC
CCACTATTTCGAGCCCTGCTGGTGATGCAGGGCTATCTCCAGGACCCGTC
CCTCCGTCCCGGGACGGAAATTTGCATGTTAGGATAGAGAAAAATTTCAC
CCCAATCTGCTCCAAAGATCTGGACTTCATCACATGAAATTAATGAAAAT
GTATTTTTGTAAGTTTGAAATGACAGATTTAGATTTAACAATGAAAATTA
ACAAAATGGGCTTCCAAACAATGAATAGGGGACAGGAGAAAATTAAAGCT
GGAGACAGCCCTGGTATGATCATCATGTGTCTACTACACCTTTACTAGGC
TTTAGTACATAGACCAACTAACTGTCCATCACAATTAAAAGCCTAACCAA
TGGCAGCATAGCAGTTATCGATTTGATCAATGAGAGAGTGGCTGCAGTTC
TTGTGATTATTTGCATTTTTGTGTTTTTATTTTCTTTTTTACATTTTGCC
TGAAGTGGATGGGCTACGAGATTGGTCTACCATAATGTCTCTTGCCAACC
TGTCCATTCAAATTTGTGTGGCCTCTGAGTTTGACAGGGTACAGCTGCAT
GTAGTGGTAAAGGTTGTAACAAACCTGGCCTTGGAAGGGTACTAGAAAAG
TGGAAAAGCATGCAAGCCTAGAGGGTAGAGGAAGTGCTTGTTTTTCTGGA
CCCTCTGAACTTCTTTAGTTTCCCACTCTCCTGCCCTTCCCACCGGCCAT
GTCTGTGTGACAACTACAGCTGCAGCGCATGGTTTGATCACCAGGCTGTC
TACATCCAACATACATGTAGGCTAGACCAATACAACTCCCTGTTCTCAAT
CATTTTGTGTGACAGAATAGCCAAGTATACCACATTACCATACTAACTTG
ATACGTTTGTGAAGGTTAGACATCCAGGTAAACAATATACATGTATAAGG
AGAAATTCAAACTCTACAACTGGATAAAAATTCAGAGATTTATTTCCGTC
ATCCATCAATTTTCGTCTGTATCCACACAAACAATTGCTACCATACTGTG
ATTCATACAAATCATCATCATCATCATACAGTACATCTGGAGAAATATTC
TCCTGTGAGGTAAACTAAGTAAAGCAATTCCAGTACTTTTTGTCTTTCGT
GGCAGACACCAATGAAAACCCATACAAATAAGCTTTACAAAATGAGCAAA
AATATTGGAAAATGGATACTAATGAGCAAAGTCAAAGAAGACGATGTGAA
AATGTAGCATAGTAGTTTCATGATAAATGCAACTTTTTTTTTGCAAACAT
CAGTTTTGGGATGCCCAGAGAATATCATCCATATAGTCAAATCAGTATGG
CCTTATGAAAAAAACAATTTTACTCAAAATTTGGGTCAAGGTACCTTAAT
TTGAAAAAGACCCAGAGACAATCATAAATGCTATATAAGTAACAGATAAA
TGGAAGCAATGACACAACGACTCTCAGGTCAACTTGGCAATCCAAGCACC
AGTGAATATTCACATTCTCCTCTAAAAACTGGAAAGGGGCAAATCCAACC
AGAACTTCGAATTGGTGTAGCCTTCCTTGCATTTGTTACCAAAGTACCAA
AATAACATATCTTGACTTAGACTTAATGAACCACTGTATAAGCAATGTTA
ACTGAATCAAACTAGAAGTCATAATGAATACAGGTTACAAAGTATTCATC
ATTTGCTGTGACATGTCTCACAAATATCACAATGTGTAGATAAAAAAAGC
ATTTAACACTTTATGAAATGCTTTCTATATTTCATAGTTTTGCAAGCTCT
AACAAAAAGTCATGAGCAATTTGGCCTGCACGAATTCAGTAGTGCACTTG
TTTGAAATGTAAAGCAAATATGAATATGCAATTCTATTTGCACAGACGGA
TCAATATTTAAACTTAAAGCAGAAGTGTTCATGCCAAGTGAATTATGGTG
GGACAGTTGTATTTTGTACATTCACACCAGATCATGGCTGACATGATTGC
CTAGATACTGAAATGTTCTTCAATTTATTAAAAGATAAAAAGAACTTTGC
TAGCTATTAAACTAGATAGATTGTCACTAAGAGTTATCATGCGATGTTGT
CTCTTTTGTGCAGAAATCCTATATATAATATGGTATGTTGATTAACATGA
TTTTGCTTCTATTTCAATAGGGCACAATGAATGTAAAGACTACTATGTTG
TTACATGTATTATTACCATCTCTTGTAGTTATGTCAGGTCACTCTTACAC
CACTGTAAAATACTAATAAAAGCAAAGCTATGCTCAGAAATACTAGATAT
GTTTCTATACAGTAAACAGAATTAAGCAATAGGGATCTACTGAGGGGCCA
TGATCGTGAGTTAATGTCATAGGAGATAGTACGTAGCAAACTGGTCTAAT
TTTGCAGCAGTATTTCTTTGAGGAACTGCAATTGAAAGGACTATTATAAA
CTACTACTATGATTGTCCCTAACCCCAAAGAAGATAGATGAATTCAACAC
AGATATTGGTTCTCTGCTGGACAAATTCTAGCTGACTTTTCCTCCACTTC
AAGTTCCTATCAAAAAGCAAAGGCTGTTTTAAGTTGGTTTCTGTTTTGTG
TACTCTGAGATAATGGTCTGTTACATTCTTTTAAAGCCACAGAAATGTGC
ATGAGTTACCAATTGAATATGTAAACAAACTCAGACTAACCAGATTAGTG
TATGGAACGGCAGACCTTTGAATGTAAACGTACGCCTACGCATTGACATG
TGAACTTGTTAGTTTTGCCATTGCTGCTGGGAAACCTCTATGCTTGGGTA
AGGGTTTTTATGAAAATTCCTGTCATGTTTTATAACTTCAAACGTTCAGT
GTGTAAGGAATAACCTTACATGTATCCTTCAAGTCAACTACAAATGATTT
CTGACAACAGGTTGATAACAATTTAATTTCCAACACTAACTGATAGATTC
AAGCCTGCCCAAGAAGACCACTCAGGGGACCTTGATAAGAAATGCCCAAG
AAGACCTAGAAAATCTGGTCTATGTGGACAAGTGGTCACAATGAATGTGG
TTCTTAATAATCAAGTCAATGAGGAAAATTGGGGCCACCAGCCTGGTATC
CAAATCTATTATAGCTTCCGAGTCTCTTTGATTCTTTTTTGCCTACCAGT
ACTTGCAAAAGAGATGAAAGTGACTCGGCAGCTACAATAGGTTTCGATAC
CAGGCCAATTAATAAGGGACTGCCAAAAGTGGTCAATTAGGCACAGGCTG
CAACAGGCGCCGCAATGATGTAAACAAACAATTTTGACCTCAACACAGTT
TCAGTTCATGTGACAATGATATAGTAATATGTATCGTACCTGTAGGCCAA
TGGAACAAAATTGTATTAATGGAAAAAAATTTTCACATTGTATTTATGTA
TTAATAGTACACAGCCTCAGTGAGCTAAGGCTATTTCAATAGTATCAATA
TAGGCATACTGGTGGTAAGAAGACTTATGTGTGGGTCAAATGGTTTGAAA
ATAGAACTGTTTTCTGTAAACATTGTAATGTTAATTTTGCACAGTTCAGA
TGTTGATTCATCATGTTGCCATTGAGAGGTCTGCCATTGCATACACACCA
GTAGACGTGATTTTATCAGACAATTGTCTGGTATGTATACATAGCAGAGT
GTAATTTGTACTAGATTACTGATATATGGATTTTTTAAATTAGAAGTACA
TGTATATCACCAGATATCTGTATCATTTTATTACATTACAAGATGCAATA
CATATTATGTACATCCTTCAGTGAGAGCCTGTGGTCACTTATTATTATAT
TTCCCTCTCTATACCCTGTTTTTGCTAGCCTCCTTCGCAGACTTCCTGGA
ACGGCCGCGTAAATATTTGGCGAAGGGTGGGTGATGCGATTTCTTACACG
GGCCAATGTTAAATGCCGGCAAGGAACTTTCGCCACCGAGGGACGACTGC
CTTACCCCTCCCCCAAATATATACGCTGCTGTTCCAGGAAGTCTGCAAAG
GAGGCTAGTTTTTGCTAGCTTGTTCCTTCTTCTTCTTTCTTCTGTCAAAA
ACCAAGTAGATTTAGGGTGCATGGCAGCTATATTAATGCAGAAACTTATA
TTTCCCTCAGGGTGGATGGTATGGATGTCATATTGGAGGTATAGGTAGCT
TTAGGAAATACAATGGAATATGCATTGTGCTAATGAAAACCTCATTTGCA
TAATATATGCAAAAATTATATTTCCCTTACCATAAATGTTATGGACGTCA
TTGGAGGTGTAGGTAGCTTTAGGAAAGGTTGATAAGATGGAATGTGTGCT
ATGCTAATGAGGACCTCATTTGCATCATTTATGCAGAAACTTCATATTTC
CCTAACGGTAAAAGCTATGGATGCCACATTGGAGGTATAGGTAGCTTTAA
GAAAGGTGAATACAACGGAGTGTGGCTTATGCTAATAAGGACCCAATTTG
TATAATTTATGCAGAAACTTCATATTTCTTTTGTGGTCAATGGTAGGGAT
GTCCTATTGGAGATAAAGGTAGCTCAAGAAAAGATGAATACCTAAGAATA
TATGTTATGCTAATGTAGACCTAATTTGCATAATTAGTGCAGAAACTTGA
TATTTCTTTTGTGGTAATGATAGGGACTGCATATTGGACATAAAACTAGG
TTGAATAAACCATTTCACACTTCTTTTATCAATGAGAGGGAAATATCCTG
CATTTTCCTGAAAATGTTGCCTTTCTAGTTATTTTCTTTTTCTTCGAATT
AGATTGCTACACAATGGCCACTTAGTAGAAATTATGCCTTCAGCCCACAC
CTTAACATGCCTTTGGCCAAGGTTTATTATTATACTGCAGTAAAGGTGCA
TGCTCAATTTCACCCCAGATCAGTCAAGTGAGGACATTTGATAGGTGTAA
ACTGCCTTACCCAAGGGCACAAGACGGGGGCCTGCTAGGGATTCGAGCCC
AGAACCTTTAGATTCCAAGTCCACAACTCTAATGACAAGACCACATTTCT
AAAAACATGATAGGGTGAATGATTTGCTAAAGGAGGAAGCCAGCCATTAA
AAACATATCAGATACAGTTTTGCAGCCCAAGGAGTCTGGTTGATGCTATG
AAAAGCTAACATTACAAGTCAGTGGTGCTGCTACATGTCACAGGGAAACA
GTCTGAACTCTGATAATCCACTTTTCAACATAACCTGAATTTAGACAAAC
TAAAATCTTTGCCCTTTAAGATGTAGAAACAAAGATGATTGTTTACACTA
ACTGGCCATGTAACCCTAACGATGCGTAAACACGTTGATGATGATGATGG
CCTTACACTAGACACACTTGACTCTAGATCTTTTTTATGATCAGATGTTA
TGATCTGCTCAATACTTAAAAACTTACATATATTTGGAGAGTTCAAAGTC
ACAGATCTGATGTATCTTACCTTTCTGTAGTATATTGTGCTTGCATTTAA
CTTCCTTTGCATTTGAATATTTTGACAATGCTTAATCAAACAAGAAATGG
AAGATCTC Coding sequence (CDS) from alignment at xfSc0000178:1..7508+ >transcript:BL79410_cuf0 ID=transcript:BL79410_cuf0|Name=transcript:BL79410_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1296bp|location=Sequence derived from alignment at xfSc0000178:1..7508+ (Branchiostoma lanceolatum)
TTCAGAGCAGTCAGAATCCACCGATCCAGAAAGCAGAGGAACTCAAGAGA
CTTGAGCAACCAGAGTAGCGTAGATCGTGAGGAATGCCCCGTACCACCTC
CGCGTCGCACGAGTAGGCACATAGGAAGACCCCAGGTTGAAGACTCACCC
AGATCCAAAGTTCTTAGCAAAGCCCTGCCTCCCACTCCGAGAGAGGAGGG
ACAAGATCACCCTGATGGACATGAGATCCCTTATGACTTCCTGTGGCCGG
GGACGGGAAGGATAGACACTTCAAACAGGGACAGTAGTGGGAGCACAGAG
GAACAACCACAGTTCGTGGACCGTAAGGAGTTGGACAACGCTTTGCACGT
GACGGCAGATGAAGAACCATCGGACTTTGAATATCTGGAGGATTGGGAAG
ACTGGTCAGAGATGGATAACAGGCATCGCAATGGTGAAGGGAACAACAAC
AAGGCTGTGGCCAACTCACGGTTCTCCCAAGCATCTAACAGAGAAAGAAA
TCGCAATGACAAAGGTGTGACAGAAAGTAACACTCTTAATTCACTTGTCA
GCAGTGACGAGAGTCAGGCGTATGAACTCCTTGTAGATATTGGAAAGAGC
AAGTCCCTTCCTTGGGACACTAGGACACCTTTATCTCCAACTAATGCTGA
CTTGGGTGACATTCCACCTCGACCACCGAGGAACCCCACAGCAACCCCAC
CACCCCTCCCACTGAGTCCCCGCCCTTCCATGACTAGTCTGAGTGACAGC
CAAAAATCAGGCCAAACTTCACCTCAGCAGGTCAGGTCAGGTCAGAGGTC
GCCTGTTGAAGGACCACCGATCCTCCCGCGTGGAATACCACCTACCCACA
GTTCTGTTTCCAGCTTGAGTGACAGCGACCCCCCTCCTCTCCCCCCACCA
CGGCTTCCTCCTCGTCCCATGACGAGCCGGGCAAAGTCCGAGAACAGGTC
GGAGAGTCCATCTGACTTTGAGGACATGGACAGTCTGAGCATAGATGGAT
CTCAAGAGAGTGACAGCGACAAAAGGTCGCCGAGGGTGAACAGCAGCCCC
TTCGTGACGGATCCTGACTGGATCCCGCCGGATAACTTGTCCAACCTGAC
AGTCCAGGAGGTGTCGCAGTGCCTTCGCTACATCGGGACGCCGGACAATG
TAGTGCAGCAGTTCTTTCGGGAAAGGATAGATGGACAGATGCTAATACAG
TTAGACAAAGACATTCTCAGCCAAGAATTCAGGCTCAGTGGCCTGCAGAC
TAAGAAAATCTCTGAGTTCATCAATGGCTGGAGACCCAGACTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0000178 | genome | xfSc0000178:1..7508 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79410_cuf0 |
| Biotype | protein_coding |
|
